RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 ATP7BP35670 1465 aa18.79■□□□□ 0.6
CLN3-253ENST00000636977 SETD1AO15047 1707 aaKnown RBP18.78■□□□□ 0.6
CLN3-253ENST00000636977 NUCB1Q02818 461 aa18.78■□□□□ 0.6
CLN3-253ENST00000636977 VSIG10Q8N0Z9 540 aa18.78■□□□□ 0.6
CLN3-253ENST00000636977 PODXL2Q9NZ53 605 aa18.78■□□□□ 0.6
CLN3-253ENST00000636977 ZBTB7BO15156 539 aaPredicted RBP18.78■□□□□ 0.6
CLN3-253ENST00000636977 NUDT16Q96DE0 195 aaKnown RBP18.78■□□□□ 0.6
CLN3-253ENST00000636977 CPSF1Q10570 1443 aaKnown RBP18.77■□□□□ 0.6
CLN3-253ENST00000636977 CPS1P31327 1500 aa18.77■□□□□ 0.6
CLN3-253ENST00000636977 C8orf58Q8NAV2 365 aa18.77■□□□□ 0.59
CLN3-253ENST00000636977 DLC1Q96QB1 1528 aa18.76■□□□□ 0.59
CLN3-253ENST00000636977 CHD1LQ86WJ1 897 aa18.76■□□□□ 0.59
CLN3-253ENST00000636977 SIRT2Q8IXJ6 389 aa18.75■□□□□ 0.59
CLN3-253ENST00000636977 EDC4Q6P2E9 1401 aaKnown RBP18.74■□□□□ 0.59
CLN3-253ENST00000636977 ZNF853P0CG23 659 aa18.74■□□□□ 0.59
CLN3-253ENST00000636977 ANKRD45Q5TZF3 282 aa18.74■□□□□ 0.59
CLN3-253ENST00000636977 NRXN3Q9Y4C0 1643 aa18.74■□□□□ 0.59
CLN3-253ENST00000636977 NUTM2FA1L443 756 aa18.74■□□□□ 0.59
CLN3-253ENST00000636977 SPATA31D1Q6ZQQ2 1576 aa18.73■□□□□ 0.59
CLN3-253ENST00000636977 DIP2BQ9P265 1576 aa18.73■□□□□ 0.59
CLN3-253ENST00000636977 TWISTNBQ3B726 338 aaPredicted RBP18.73■□□□□ 0.59
CLN3-253ENST00000636977 AEBP1Q8IUX7 1158 aa18.73■□□□□ 0.59
CLN3-253ENST00000636977 COG3Q96JB2 828 aa18.73■□□□□ 0.59
CLN3-253ENST00000636977 IFT57Q9NWB7 429 aa18.73■□□□□ 0.59
CLN3-253ENST00000636977 PRR36Q9H6K5 1346 aa18.73■□□□□ 0.59
CLN3-253ENST00000636977 GNAI1P63096 354 aa18.72■□□□□ 0.59
CLN3-253ENST00000636977 BRPF1P55201 1214 aaPredicted RBP18.72■□□□□ 0.59
CLN3-253ENST00000636977 KRT24Q2M2I5 525 aa18.72■□□□□ 0.59
CLN3-253ENST00000636977 ZMYND15Q9H091 742 aa18.72■□□□□ 0.59
CLN3-253ENST00000636977 CCDC61Q9Y6R9 512 aa18.71■□□□□ 0.59
CLN3-253ENST00000636977 CDK12Q9NYV4 1490 aaPredicted RBP18.7■□□□□ 0.58
CLN3-253ENST00000636977 AGLP35573 1532 aa18.7■□□□□ 0.58
CLN3-253ENST00000636977 DLG5Q8TDM6 1919 aa18.7■□□□□ 0.58
CLN3-253ENST00000636977 ARXQ96QS3 562 aa18.69■□□□□ 0.58
CLN3-253ENST00000636977 CFAP44Q96MT7 982 aa18.69■□□□□ 0.58
CLN3-253ENST00000636977 PTCH1Q13635 1447 aa18.69■□□□□ 0.58
CLN3-253ENST00000636977 PPP6R1Q9UPN7 881 aa18.69■□□□□ 0.58
CLN3-253ENST00000636977 ABCC4O15439 1325 aa18.68■□□□□ 0.58
CLN3-253ENST00000636977 ZNF428Q96B54 188 aa18.68■□□□□ 0.58
CLN3-253ENST00000636977 SOX12O15370 315 aa18.67■□□□□ 0.58
CLN3-253ENST00000636977 GLIPR1L2Q4G1C9 344 aa18.67■□□□□ 0.58
CLN3-253ENST00000636977 ARHGAP45Q92619 1136 aa18.67■□□□□ 0.58
CLN3-253ENST00000636977 AATKQ6ZMQ8 1374 aa18.67■□□□□ 0.58
CLN3-253ENST00000636977 PIK3R4Q99570 1358 aa18.67■□□□□ 0.58
CLN3-253ENST00000636977 CALD1Q05682 793 aaKnown RBP18.67■□□□□ 0.58
CLN3-253ENST00000636977 SULT6B1Q6IMI4 303 aa18.66■□□□□ 0.58
CLN3-253ENST00000636977 GZF1Q9H116 711 aaPredicted RBP18.66■□□□□ 0.58
CLN3-253ENST00000636977 EIF4A2Q14240 407 aaKnown RBP18.66■□□□□ 0.58
CLN3-253ENST00000636977 MCM4P33991 863 aa18.65■□□□□ 0.58
CLN3-253ENST00000636977 MCM10Q7L590 875 aa18.65■□□□□ 0.58
CLN3-253ENST00000636977 REREQ9P2R6 1566 aa18.65■□□□□ 0.58
CLN3-253ENST00000636977 ROBO2Q9HCK4 1378 aa18.65■□□□□ 0.58
CLN3-253ENST00000636977 BMP2KLQ5H9B9 411 aa18.65■□□□□ 0.58
CLN3-253ENST00000636977 RBM25P49756 843 aaKnown RBP18.64■□□□□ 0.57
CLN3-253ENST00000636977 ZNF692Q9BU19 519 aaPredicted RBP18.64■□□□□ 0.57
CLN3-253ENST00000636977 CD2BP2O95400 341 aaKnown RBP18.64■□□□□ 0.57
CLN3-253ENST00000636977 HSCBQ8IWL3 235 aa18.64■□□□□ 0.57
CLN3-253ENST00000636977 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLN3-253ENST00000636977 GCC1Q96CN9 775 aa18.64■□□□□ 0.57
CLN3-253ENST00000636977 KIF2CQ99661 725 aa18.64■□□□□ 0.57
CLN3-253ENST00000636977 ESF1Q9H501 851 aaKnown RBP18.63■□□□□ 0.57
CLN3-253ENST00000636977 TBC1D9Q6ZT07 1266 aa18.63■□□□□ 0.57
CLN3-253ENST00000636977 RBM42Q9BTD8 480 aaKnown RBP18.63■□□□□ 0.57
CLN3-253ENST00000636977 CHMP5Q9NZZ3 219 aa18.63■□□□□ 0.57
CLN3-253ENST00000636977 HSP90AB2PQ58FF8 381 aa18.63■□□□□ 0.57
CLN3-253ENST00000636977 MON2Q7Z3U7 1717 aa18.62■□□□□ 0.57
CLN3-253ENST00000636977 FOXD4L1Q9NU39 408 aa18.62■□□□□ 0.57
CLN3-253ENST00000636977 LMOD3Q0VAK6 560 aa18.61■□□□□ 0.57
CLN3-253ENST00000636977 C16orf71Q8IYS4 520 aaPredicted RBP18.61■□□□□ 0.57
CLN3-253ENST00000636977 MIS18AQ9NYP9 233 aa18.61■□□□□ 0.57
CLN3-253ENST00000636977 C3P01024 1663 aa18.61■□□□□ 0.57
CLN3-253ENST00000636977 ACEP12821 1306 aa18.61■□□□□ 0.57
CLN3-253ENST00000636977 KNDC1Q76NI1 1749 aa18.61■□□□□ 0.57
CLN3-253ENST00000636977 TTC21BQ7Z4L5 1316 aa18.6■□□□□ 0.57
CLN3-253ENST00000636977 GSPT1P15170 499 aaKnown RBP18.6■□□□□ 0.57
CLN3-253ENST00000636977 API5Q9BZZ5 524 aaKnown RBP18.6■□□□□ 0.57
CLN3-253ENST00000636977 LTKP29376 864 aa18.58■□□□□ 0.57
CLN3-253ENST00000636977 DDIT3P35638 169 aa18.58■□□□□ 0.57
CLN3-253ENST00000636977 OTUD7AQ8TE49 926 aaPredicted RBP18.58■□□□□ 0.57
CLN3-253ENST00000636977 AKAP12Q02952 1782 aa18.58■□□□□ 0.57
CLN3-253ENST00000636977 TECPR2O15040 1411 aa18.58■□□□□ 0.56
CLN3-253ENST00000636977 FOXO3O43524 673 aa18.58■□□□□ 0.56
CLN3-253ENST00000636977 APBB1O00213 710 aa18.57■□□□□ 0.56
CLN3-253ENST00000636977 SLC26A8Q96RN1 970 aa18.57■□□□□ 0.56
CLN3-253ENST00000636977 ITSN1Q15811 1721 aa18.57■□□□□ 0.56
CLN3-253ENST00000636977 PLEKHM2Q8IWE5 1019 aa18.57■□□□□ 0.56
CLN3-253ENST00000636977 TNRQ92752 1358 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 TMEM2Q9UHN6 1383 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 TRAK2O60296 914 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 CHMP4BQ9H444 224 aaKnown RBP18.56■□□□□ 0.56
CLN3-253ENST00000636977 NCOA3Q9Y6Q9 1424 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 CHL1O00533 1208 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 SNX21Q969T3 373 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 SIRT1Q96EB6 747 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.56■□□□□ 0.56
CLN3-253ENST00000636977 RGS12O14924 1447 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 ADAMTS13Q76LX8 1427 aa18.56■□□□□ 0.56
CLN3-253ENST00000636977 SMARCA5O60264 1052 aaPredicted RBP18.55■□□□□ 0.56
CLN3-253ENST00000636977 HSP90AB1P08238 724 aaKnown RBP18.55■□□□□ 0.56
CLN3-253ENST00000636977 PLPPR3Q6T4P5 718 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms