RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 NCBP3Q53F19 620 aaKnown RBP19.59■□□□□ 0.73
NPHP4-211ENST00000622020 FOXD4L5Q5VV16 416 aaPredicted RBP19.59■□□□□ 0.73
NPHP4-211ENST00000622020 FOXD4L4Q8WXT5 416 aaPredicted RBP19.59■□□□□ 0.73
NPHP4-211ENST00000622020 CHAMP1Q96JM3 812 aa19.59■□□□□ 0.73
NPHP4-211ENST00000622020 COL3A1P02461 1466 aaPredicted RBP19.58■□□□□ 0.73
NPHP4-211ENST00000622020 SMARCA5O60264 1052 aaPredicted RBP19.58■□□□□ 0.73
NPHP4-211ENST00000622020 NME9Q86XW9 330 aa19.58■□□□□ 0.73
NPHP4-211ENST00000622020 PKNOX2Q96KN3 472 aa19.58■□□□□ 0.73
NPHP4-211ENST00000622020 PUS7Q96PZ0 661 aaKnown RBP19.58■□□□□ 0.73
NPHP4-211ENST00000622020 PKP1Q13835 747 aa19.58■□□□□ 0.72
NPHP4-211ENST00000622020 MCTP1Q6DN14 999 aa19.57■□□□□ 0.72
NPHP4-211ENST00000622020 LMTK2Q8IWU2 1503 aa19.56■□□□□ 0.72
NPHP4-211ENST00000622020 SOX12O15370 315 aa19.56■□□□□ 0.72
NPHP4-211ENST00000622020 ARHGEF28Q8N1W1 1705 aaKnown RBP19.55■□□□□ 0.72
NPHP4-211ENST00000622020 NCOA3Q9Y6Q9 1424 aa19.55■□□□□ 0.72
NPHP4-211ENST00000622020 CDC45O75419 566 aa19.55■□□□□ 0.72
NPHP4-211ENST00000622020 GNAI1P63096 354 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 USP32Q8NFA0 1604 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 FRMPD1Q5SYB0 1578 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 VSIG10Q8N0Z9 540 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 ABCC3O15438 1527 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 AK9Q5TCS8 1911 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 PLEKHM2Q8IWE5 1019 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 CIZ1Q9ULV3 898 aaPredicted RBP19.54■□□□□ 0.72
NPHP4-211ENST00000622020 CD163L1Q9NR16 1453 aa19.54■□□□□ 0.72
NPHP4-211ENST00000622020 GOLGA6L22H0YM25 854 aa19.53■□□□□ 0.72
NPHP4-211ENST00000622020 BAG4O95429 457 aaKnown RBP19.53■□□□□ 0.72
NPHP4-211ENST00000622020 CAVIN1Q6NZI2 390 aaKnown RBP19.52■□□□□ 0.72
NPHP4-211ENST00000622020 LRRC7Q96NW7 1537 aa19.52■□□□□ 0.72
NPHP4-211ENST00000622020 POGZQ7Z3K3 1410 aa19.52■□□□□ 0.72
NPHP4-211ENST00000622020 NUTM2FA1L443 756 aa19.52■□□□□ 0.72
NPHP4-211ENST00000622020 NASPP49321 788 aaPredicted RBP19.52■□□□□ 0.72
NPHP4-211ENST00000622020 NEXMIFQ5QGS0 1516 aa19.52■□□□□ 0.72
NPHP4-211ENST00000622020 YTHDC2Q9H6S0 1430 aaKnown RBP19.51■□□□□ 0.71
NPHP4-211ENST00000622020 ZGPATQ8N5A5 531 aaKnown RBP19.51■□□□□ 0.71
NPHP4-211ENST00000622020 SIGLEC1Q9BZZ2 1709 aa19.51■□□□□ 0.71
NPHP4-211ENST00000622020 PNPLA6Q8IY17 1366 aa19.5■□□□□ 0.71
NPHP4-211ENST00000622020 SKOR2Q2VWA4 1001 aaPredicted RBP19.5■□□□□ 0.71
NPHP4-211ENST00000622020 MIS18AQ9NYP9 233 aa19.5■□□□□ 0.71
NPHP4-211ENST00000622020 HSP90AA2PQ14568 343 aaPredicted RBP19.5■□□□□ 0.71
NPHP4-211ENST00000622020 AEBP1Q8IUX7 1158 aa19.5■□□□□ 0.71
NPHP4-211ENST00000622020 NOL8Q76FK4 1167 aaKnown RBP19.49■□□□□ 0.71
NPHP4-211ENST00000622020 IFT57Q9NWB7 429 aa19.49■□□□□ 0.71
NPHP4-211ENST00000622020 SLC52A1Q9NWF4 448 aa19.49■□□□□ 0.71
NPHP4-211ENST00000622020 MCM10Q7L590 875 aa19.49■□□□□ 0.71
NPHP4-211ENST00000622020 IL13P35225 146 aa19.49■□□□□ 0.71
NPHP4-211ENST00000622020 TPRNQ4KMQ1 711 aa19.49■□□□□ 0.71
NPHP4-211ENST00000622020 TSHZ3Q63HK5 1081 aa19.49■□□□□ 0.71
NPHP4-211ENST00000622020 MLECQ14165 292 aa19.48■□□□□ 0.71
NPHP4-211ENST00000622020 ABCC4O15439 1325 aa19.48■□□□□ 0.71
NPHP4-211ENST00000622020 FOXD4L6Q3SYB3 417 aaPredicted RBP19.48■□□□□ 0.71
NPHP4-211ENST00000622020 FOXD4L3Q6VB84 417 aaPredicted RBP19.48■□□□□ 0.71
NPHP4-211ENST00000622020 ARHGAP45Q92619 1136 aa19.48■□□□□ 0.71
NPHP4-211ENST00000622020 RBM27Q9P2N5 1060 aaKnown RBP19.48■□□□□ 0.71
NPHP4-211ENST00000622020 FAM135BQ49AJ0 1406 aa19.47■□□□□ 0.71
NPHP4-211ENST00000622020 CFAP44Q96MT7 982 aa19.47■□□□□ 0.71
NPHP4-211ENST00000622020 CHMP4BQ9H444 224 aaKnown RBP19.47■□□□□ 0.71
NPHP4-211ENST00000622020 PTPRMP28827 1452 aa19.47■□□□□ 0.71
NPHP4-211ENST00000622020 PRPF40AO75400 957 aaKnown RBP19.47■□□□□ 0.71
NPHP4-211ENST00000622020 SLC4A10Q6U841 1118 aa19.47■□□□□ 0.71
NPHP4-211ENST00000622020 API5Q9BZZ5 524 aaKnown RBP19.47■□□□□ 0.71
NPHP4-211ENST00000622020 CALD1Q05682 793 aaKnown RBP19.46■□□□□ 0.71
NPHP4-211ENST00000622020 ZBTB7CA1YPR0 619 aa19.46■□□□□ 0.71
NPHP4-211ENST00000622020 SDSP20132 328 aa19.46■□□□□ 0.71
NPHP4-211ENST00000622020 TTC22Q5TAA0 569 aa19.46■□□□□ 0.71
NPHP4-211ENST00000622020 TXNDC2Q86VQ3 553 aa19.46■□□□□ 0.71
NPHP4-211ENST00000622020 ANP32BQ92688 251 aaKnown RBP19.46■□□□□ 0.71
NPHP4-211ENST00000622020 ZNF428Q96B54 188 aa19.46■□□□□ 0.71
NPHP4-211ENST00000622020 ZMYND15Q9H091 742 aa19.46■□□□□ 0.71
NPHP4-211ENST00000622020 MEIS3Q99687 375 aa19.45■□□□□ 0.7
NPHP4-211ENST00000622020 USP26Q9BXU7 913 aa19.45■□□□□ 0.7
NPHP4-211ENST00000622020 GLIPR1L2Q4G1C9 344 aa19.45■□□□□ 0.7
NPHP4-211ENST00000622020 DCTPP1Q9H773 170 aa19.45■□□□□ 0.7
NPHP4-211ENST00000622020 ZNF853P0CG23 659 aa19.44■□□□□ 0.7
NPHP4-211ENST00000622020 SULT6B1Q6IMI4 303 aa19.44■□□□□ 0.7
NPHP4-211ENST00000622020 BRPF1P55201 1214 aaPredicted RBP19.44■□□□□ 0.7
NPHP4-211ENST00000622020 HECW2Q9P2P5 1572 aa19.44■□□□□ 0.7
NPHP4-211ENST00000622020 MED14O60244 1454 aa19.44■□□□□ 0.7
NPHP4-211ENST00000622020 MLH3Q9UHC1 1453 aa19.44■□□□□ 0.7
NPHP4-211ENST00000622020 CFAP74Q9C0B2 1584 aa19.43■□□□□ 0.7
NPHP4-211ENST00000622020 RABEP1Q15276 862 aa19.43■□□□□ 0.7
NPHP4-211ENST00000622020 KLHL40Q2TBA0 621 aa19.43■□□□□ 0.7
NPHP4-211ENST00000622020 F6X3S4 739 aa19.43■□□□□ 0.7
NPHP4-211ENST00000622020 COG3Q96JB2 828 aa19.43■□□□□ 0.7
NPHP4-211ENST00000622020 ISY1Q9ULR0 285 aaKnown RBP19.43■□□□□ 0.7
NPHP4-211ENST00000622020 YEATS2Q9ULM3 1422 aa19.42■□□□□ 0.7
NPHP4-211ENST00000622020 PTCH1Q13635 1447 aa19.41■□□□□ 0.7
NPHP4-211ENST00000622020 INTS3Q68E01 1043 aaKnown RBP19.41■□□□□ 0.7
NPHP4-211ENST00000622020 ZSCAN23Q3MJ62 389 aa19.41■□□□□ 0.7
NPHP4-211ENST00000622020 PIK3C2BO00750 1634 aa19.41■□□□□ 0.7
NPHP4-211ENST00000622020 KIAA1211Q6ZU35 1233 aa19.41■□□□□ 0.7
NPHP4-211ENST00000622020 NECTIN2Q92692 538 aa19.41■□□□□ 0.7
NPHP4-211ENST00000622020 PRIM1P49642 420 aaKnown RBP19.4■□□□□ 0.7
NPHP4-211ENST00000622020 CEP85Q6P2H3 762 aa19.4■□□□□ 0.7
NPHP4-211ENST00000622020 SLC4A2P04920 1241 aa19.4■□□□□ 0.7
NPHP4-211ENST00000622020 RBSNQ9H1K0 784 aa19.4■□□□□ 0.7
NPHP4-211ENST00000622020 MSNP26038 577 aaKnown RBP19.39■□□□□ 0.69
NPHP4-211ENST00000622020 CCDC173Q0VFZ6 552 aa19.39■□□□□ 0.69
NPHP4-211ENST00000622020 RNF214Q8ND24 703 aa19.39■□□□□ 0.69
NPHP4-211ENST00000622020 LMBRD1Q9NUN5 540 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms