RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 NISCHQ9Y2I1 1504 aa31.15■■■□□ 2.58
NPHP4-211ENST00000622020 SHROOM4Q9ULL8 1493 aa27.65■■■□□ 2.02
NPHP4-211ENST00000622020 SUPT5HO00267 1087 aaKnown RBP27.31■■□□□ 1.96
NPHP4-211ENST00000622020 DCAF8L2P0C7V8 631 aa26.71■■□□□ 1.87
NPHP4-211ENST00000622020 CHIC1Q5VXU3 224 aa26.39■■□□□ 1.82
NPHP4-211ENST00000622020 MYO15BQ96JP2 1530 aa26.37■■□□□ 1.81
NPHP4-211ENST00000622020 ZCCHC6Q5VYS8 1495 aaKnown RBP26.35■■□□□ 1.81
NPHP4-211ENST00000622020 PCGF6Q9BYE7 350 aa26.27■■□□□ 1.8
NPHP4-211ENST00000622020 HRCP23327 699 aa26.21■■□□□ 1.79
NPHP4-211ENST00000622020 PPARGC1BQ86YN6 1023 aaKnown RBP26.03■■□□□ 1.76
NPHP4-211ENST00000622020 LOC105371045A0A1W2PR82 267 aa25.95■■□□□ 1.74
NPHP4-211ENST00000622020 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
NPHP4-211ENST00000622020 EHMT2Q96KQ7 1210 aa25.43■■□□□ 1.66
NPHP4-211ENST00000622020 DCAF1Q9Y4B6 1507 aa25.38■■□□□ 1.65
NPHP4-211ENST00000622020 FAM9AQ8IZU1 332 aaPredicted RBP25.35■■□□□ 1.65
NPHP4-211ENST00000622020 TRIM26Q12899 539 aaPredicted RBP25.34■■□□□ 1.65
NPHP4-211ENST00000622020 TRIM41Q8WV44 630 aa25.18■■□□□ 1.62
NPHP4-211ENST00000622020 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
NPHP4-211ENST00000622020 SCRIBQ14160 1630 aa24.97■■□□□ 1.59
NPHP4-211ENST00000622020 ABCC9O60706 1549 aa24.9■■□□□ 1.58
NPHP4-211ENST00000622020 RB1CC1Q8TDY2 1594 aa24.78■■□□□ 1.56
NPHP4-211ENST00000622020 ZEB1P37275 1124 aaPredicted RBP24.78■■□□□ 1.56
NPHP4-211ENST00000622020 TTBK1Q5TCY1 1321 aaPredicted RBP24.64■■□□□ 1.54
NPHP4-211ENST00000622020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.59■■□□□ 1.53
NPHP4-211ENST00000622020 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
NPHP4-211ENST00000622020 SCAF1Q9H7N4 1312 aaKnown RBP24.55■■□□□ 1.52
NPHP4-211ENST00000622020 CCER1Q8TC90 406 aaPredicted RBP24.45■■□□□ 1.5
NPHP4-211ENST00000622020 MROH2BQ7Z745 1585 aa24.41■■□□□ 1.5
NPHP4-211ENST00000622020 PELP1Q8IZL8 1130 aaKnown RBP24.4■■□□□ 1.5
NPHP4-211ENST00000622020 WIZO95785 1651 aa24.3■■□□□ 1.48
NPHP4-211ENST00000622020 NEUROD1Q13562 356 aa24.16■■□□□ 1.46
NPHP4-211ENST00000622020 DIEXFQ68CQ4 756 aaKnown RBP24.1■■□□□ 1.45
NPHP4-211ENST00000622020 ACIN1Q9UKV3 1341 aaKnown RBP24.08■■□□□ 1.44
NPHP4-211ENST00000622020 ABCC8Q09428 1581 aa24.05■■□□□ 1.44
NPHP4-211ENST00000622020 NACADO15069 1562 aa24.05■■□□□ 1.44
NPHP4-211ENST00000622020 UBTFP17480 764 aaKnown RBP24.04■■□□□ 1.44
NPHP4-211ENST00000622020 CCDC88BA6NC98 1476 aa24.01■■□□□ 1.43
NPHP4-211ENST00000622020 GTF3C3Q9Y5Q9 886 aa23.99■■□□□ 1.43
NPHP4-211ENST00000622020 SOGA1O94964 1423 aa23.95■■□□□ 1.42
NPHP4-211ENST00000622020 CEP162Q5TB80 1403 aa23.91■■□□□ 1.42
NPHP4-211ENST00000622020 BAZ1AQ9NRL2 1556 aaPredicted RBP23.9■■□□□ 1.42
NPHP4-211ENST00000622020 YTHDC1Q96MU7 727 aaKnown RBP23.9■■□□□ 1.42
NPHP4-211ENST00000622020 RANGAP1P46060 587 aaPredicted RBP23.86■■□□□ 1.41
NPHP4-211ENST00000622020 CENPBP07199 599 aaPredicted RBP23.85■■□□□ 1.41
NPHP4-211ENST00000622020 HNRNPUL2Q1KMD3 747 aaKnown RBP23.84■■□□□ 1.41
NPHP4-211ENST00000622020 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
NPHP4-211ENST00000622020 CSRNP3Q8WYN3 585 aa23.83■■□□□ 1.41
NPHP4-211ENST00000622020 EIF4G1Q04637 1599 aaKnown RBP23.79■■□□□ 1.4
NPHP4-211ENST00000622020 PABPN1Q86U42 306 aaKnown RBP eCLIP23.77■■□□□ 1.4
NPHP4-211ENST00000622020 ZNF316A6NFI3 1004 aaPredicted RBP23.71■■□□□ 1.39
NPHP4-211ENST00000622020 TNIKQ9UKE5 1360 aa23.7■■□□□ 1.39
NPHP4-211ENST00000622020 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
NPHP4-211ENST00000622020 TOP2AP11388 1531 aaKnown RBP23.69■■□□□ 1.38
NPHP4-211ENST00000622020 SMARCA2P51531 1590 aa23.65■■□□□ 1.38
NPHP4-211ENST00000622020 SMARCA4P51532 1647 aa23.61■■□□□ 1.37
NPHP4-211ENST00000622020 MIER1Q8N108 512 aa23.59■■□□□ 1.37
NPHP4-211ENST00000622020 GOLGA3Q08378 1498 aa23.5■■□□□ 1.35
NPHP4-211ENST00000622020 APLP2Q06481 763 aa23.49■■□□□ 1.35
NPHP4-211ENST00000622020 EEA1Q15075 1411 aa23.43■■□□□ 1.34
NPHP4-211ENST00000622020 CLIP1P30622 1438 aa23.4■■□□□ 1.34
NPHP4-211ENST00000622020 UNC13AQ9UPW8 1703 aa23.32■■□□□ 1.32
NPHP4-211ENST00000622020 MYT1Q01538 1121 aa23.31■■□□□ 1.32
NPHP4-211ENST00000622020 CEP164Q9UPV0 1460 aa23.29■■□□□ 1.32
NPHP4-211ENST00000622020 SYNJ1O43426 1573 aa23.28■■□□□ 1.32
NPHP4-211ENST00000622020 RAPGEF2Q9Y4G8 1499 aa23.26■■□□□ 1.31
NPHP4-211ENST00000622020 VPS8Q8N3P4 1428 aa23.22■■□□□ 1.31
NPHP4-211ENST00000622020 ITGAEP38570 1179 aa23.19■■□□□ 1.3
NPHP4-211ENST00000622020 KANK4Q5T7N3 995 aaPredicted RBP23.14■■□□□ 1.3
NPHP4-211ENST00000622020 BICRAQ9NZM4 1560 aa23.08■■□□□ 1.29
NPHP4-211ENST00000622020 KIF21BO75037 1637 aa23.08■■□□□ 1.28
NPHP4-211ENST00000622020 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
NPHP4-211ENST00000622020 ATAD2BQ9ULI0 1458 aa23.03■■□□□ 1.28
NPHP4-211ENST00000622020 DHX57Q6P158 1386 aaKnown RBP23.01■■□□□ 1.27
NPHP4-211ENST00000622020 KCNH8Q96L42 1107 aa22.9■■□□□ 1.26
NPHP4-211ENST00000622020 PEG3Q9GZU2 1588 aa22.89■■□□□ 1.25
NPHP4-211ENST00000622020 SUPT16HQ9Y5B9 1047 aaKnown RBP22.89■■□□□ 1.25
NPHP4-211ENST00000622020 ARAP1Q96P48 1450 aa22.85■■□□□ 1.25
NPHP4-211ENST00000622020 ATP1B4Q9UN42 357 aaPredicted RBP22.79■■□□□ 1.24
NPHP4-211ENST00000622020 BCANQ96GW7 911 aa22.79■■□□□ 1.24
NPHP4-211ENST00000622020 TOP2BQ02880 1626 aa22.78■■□□□ 1.24
NPHP4-211ENST00000622020 CLSPNQ9HAW4 1339 aa22.78■■□□□ 1.24
NPHP4-211ENST00000622020 PRXQ9BXM0 1461 aa22.76■■□□□ 1.23
NPHP4-211ENST00000622020 HIRIP3Q9BW71 556 aaPredicted RBP22.75■■□□□ 1.23
NPHP4-211ENST00000622020 CCNB3Q8WWL7 1395 aa22.73■■□□□ 1.23
NPHP4-211ENST00000622020 P3H3Q8IVL6 736 aa22.73■■□□□ 1.23
NPHP4-211ENST00000622020 SIN3AQ96ST3 1273 aa22.71■■□□□ 1.23
NPHP4-211ENST00000622020 FAM50AQ14320 339 aaKnown RBP22.7■■□□□ 1.22
NPHP4-211ENST00000622020 DDX10Q13206 875 aaKnown RBP22.7■■□□□ 1.22
NPHP4-211ENST00000622020 KIF27Q86VH2 1401 aa22.67■■□□□ 1.22
NPHP4-211ENST00000622020 RAB3GAP2Q9H2M9 1393 aa22.66■■□□□ 1.22
NPHP4-211ENST00000622020 RRBP1Q9P2E9 1410 aaKnown RBP22.65■■□□□ 1.22
NPHP4-211ENST00000622020 CUX1P39880 1505 aa22.64■■□□□ 1.22
NPHP4-211ENST00000622020 ERICH3Q5RHP9 1530 aa22.63■■□□□ 1.21
NPHP4-211ENST00000622020 ARHGAP35Q9NRY4 1499 aa22.63■■□□□ 1.21
NPHP4-211ENST00000622020 TSHZ2Q9NRE2 1034 aa22.61■■□□□ 1.21
NPHP4-211ENST00000622020 BIVM-ERCC5R4GMW8 1640 aa22.58■■□□□ 1.2
NPHP4-211ENST00000622020 FKBP8Q14318 412 aa22.55■■□□□ 1.2
NPHP4-211ENST00000622020 TRIM52Q96A61 297 aa22.52■■□□□ 1.2
NPHP4-211ENST00000622020 CUX2O14529 1486 aa22.5■■□□□ 1.19
NPHP4-211ENST00000622020 PHLDB1Q86UU1 1377 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms