RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	TNPO1	Q92973	898 aa	Known RBP	4.29	□□□□□ -1.72
VMP1-216	ENST00000592790	C14orf93	Q9H972	538 aa	Known RBP	4.29	□□□□□ -1.72
VMP1-216	ENST00000592790	STK26	Q9P289	416 aa		4.29	□□□□□ -1.72
VMP1-216	ENST00000592790	WDR7	Q9Y4E6	1490 aa		4.29	□□□□□ -1.72
VMP1-216	ENST00000592790	WDR33	Q9C0J8	1336 aa	Known RBP	4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	TRIM6-TRIM34	B2RNG4	842 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	ATXN8OS	P0DMR3	200 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	CCT4	P50991	539 aa	Known RBP	4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	KIF24	Q5T7B8	1368 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	RAB3GAP1	Q15042	981 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	NFE2L2	Q16236	605 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	UVSSA	Q2YD98	709 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	TWISTNB	Q3B726	338 aa	Predicted RBP	4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	CAVIN1	Q6NZI2	390 aa	Known RBP	4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	SLC12A5	Q9H2X9	1139 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	DYNC1I1	O14576	645 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	TRIM27	P14373	513 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	CDK11B	P21127	795 aa	Known RBP	4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	TMEM57	Q8N5G2	664 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	SSH1	Q8WYL5	1049 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	CHD1	O14646	1710 aa		4.28	□□□□□ -1.72
VMP1-216	ENST00000592790	IBTK	Q9P2D0	1353 aa	Predicted RBP	4.28	□□□□□ -1.73
VMP1-216	ENST00000592790	KIAA1210	Q9ULL0	1709 aa		4.28	□□□□□ -1.73
VMP1-216	ENST00000592790	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	SASS6	Q6UVJ0	657 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	AFAP1	Q8N556	730 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	R3HCC1	Q9Y3T6	440 aa	Known RBP	4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	ARAP3	Q8WWN8	1544 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	CHRM1	P11229	460 aa	Predicted RBP	4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PDC	P20941	246 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	TAF3	Q5VWG9	929 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	AEBP1	Q8IUX7	1158 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PDCL2	Q8N4E4	241 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	FAM13B	Q9NYF5	915 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PCDHB15	Q9Y5E8	787 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	MAGI2	Q86UL8	1455 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	TET3	O43151	1660 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	RERE	Q9P2R6	1566 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PTPRC	P08575	1304 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	ZKSCAN1	P17029	563 aa	Predicted RBP	4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	ZNF692	Q9BU19	519 aa	Predicted RBP	4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	FANCA	O15360	1455 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	TRAPPC8	Q9Y2L5	1435 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	HIP1	O00291	1037 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PRKAR2B	P31323	418 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	RNF20	Q5VTR2	975 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	POTED	Q86YR6	584 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	TSR2	Q969E8	191 aa	Known RBP	4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PRIMPOL	Q96LW4	560 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	KIF1B	O60333	1816 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	PTPRT	O14522	1441 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	NOS1	P29475	1434 aa		4.27	□□□□□ -1.73
VMP1-216	ENST00000592790	FSD2	A1L4K1	749 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	PRPF40A	O75400	957 aa	Known RBP	4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	BAG4	O95429	457 aa	Known RBP	4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	GGNBP2	Q9H3C7	697 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	SMC3	Q9UQE7	1217 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	NEURL4	Q96JN8	1562 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ATP7A	Q04656	1500 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	RNF17	Q9BXT8	1623 aa	Known RBP	4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	OFD1	O75665	1012 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ANAPC15	P60006	121 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	CABP2	Q9NPB3	220 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ZNF518A	Q6AHZ1	1483 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	MINK1	Q8N4C8	1332 aa	Predicted RBP	4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	GOLGA6L19	H0YKK7	550 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	EPB41L2	O43491	1005 aa	Known RBP	4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	GNAI2	P04899	355 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	CCDC34	Q96HJ3	373 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ZSCAN31	Q96LW9	406 aa	Predicted RBP	4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ANO2	Q9NQ90	1003 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ZBTB40	Q9NUA8	1239 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	MADD	Q8WXG6	1647 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	ADGRF5	Q8IZF2	1346 aa		4.26	□□□□□ -1.73
VMP1-216	ENST00000592790	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	UQCRHL	A0A096LP55	91 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	APBB1	O00213	710 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	UQCRH	P07919	91 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	PSMA5	P28066	241 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	NEK4	P51957	841 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	SKAP1	Q86WV1	359 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CNTROB	Q8N137	903 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	BCCIP	Q9P287	314 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CFAP74	Q9C0B2	1584 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	SPHKAP	Q2M3C7	1700 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	ZNF445	P59923	1031 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	SLC4A10	Q6U841	1118 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	TBC1D9	Q6ZT07	1266 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	GAS2L2	Q8NHY3	880 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	RILPL2	Q969X0	211 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	UHRF1BP1L	A0JNW5	1464 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	ABCC1	P33527	1531 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CCP110	O43303	1012 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CAVIN2	O95810	425 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CCDC192	P0DO97	292 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	BRPF1	P55201	1214 aa	Predicted RBP	4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	ANKRD1	Q15327	319 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	CCDC30	Q5VVM6	783 aa		4.25	□□□□□ -1.73
VMP1-216	ENST00000592790	LRSAM1	Q6UWE0	723 aa		4.25	□□□□□ -1.73

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