RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	AEBP2	Q6ZN18	517 aa	Predicted RBP	6.78	□□□□□ -1.32
VMP1-216	ENST00000592790	NISCH	Q9Y2I1	1504 aa		6.54	□□□□□ -1.36
VMP1-216	ENST00000592790	CHIC1	Q5VXU3	224 aa		6.47	□□□□□ -1.37
VMP1-216	ENST00000592790	PHF23	Q9BUL5	403 aa	Predicted RBP	6	□□□□□ -1.45
VMP1-216	ENST00000592790	EHMT2	Q96KQ7	1210 aa		6	□□□□□ -1.45
VMP1-216	ENST00000592790	SUPT5H	O00267	1087 aa	Known RBP	5.75	□□□□□ -1.49
VMP1-216	ENST00000592790	SHROOM4	Q9ULL8	1493 aa		5.71	□□□□□ -1.5
VMP1-216	ENST00000592790	DCAF8L2	P0C7V8	631 aa		5.67	□□□□□ -1.5
VMP1-216	ENST00000592790	MYT1	Q01538	1121 aa		5.66	□□□□□ -1.5
VMP1-216	ENST00000592790	PELP1	Q8IZL8	1130 aa	Known RBP	5.65	□□□□□ -1.51
VMP1-216	ENST00000592790	ZEB1	P37275	1124 aa	Predicted RBP	5.63	□□□□□ -1.51
VMP1-216	ENST00000592790	HRC	P23327	699 aa		5.6	□□□□□ -1.51
VMP1-216	ENST00000592790	TTBK1	Q5TCY1	1321 aa	Predicted RBP	5.58	□□□□□ -1.52
VMP1-216	ENST00000592790	CCDC180	Q9P1Z9	1646 aa		5.58	□□□□□ -1.52
VMP1-216	ENST00000592790	PLPPR3	Q6T4P5	718 aa		5.56	□□□□□ -1.52
VMP1-216	ENST00000592790	SLC24A1	O60721	1099 aa		5.56	□□□□□ -1.52
VMP1-216	ENST00000592790	PCGF6	Q9BYE7	350 aa		5.56	□□□□□ -1.52
VMP1-216	ENST00000592790	KCNA4	P22459	653 aa		5.53	□□□□□ -1.52
VMP1-216	ENST00000592790	ZCCHC6	Q5VYS8	1495 aa	Known RBP	5.52	□□□□□ -1.53
VMP1-216	ENST00000592790	TRIM26	Q12899	539 aa	Predicted RBP	5.51	□□□□□ -1.53
VMP1-216	ENST00000592790	DCAF1	Q9Y4B6	1507 aa		5.47	□□□□□ -1.53
VMP1-216	ENST00000592790	CENPB	P07199	599 aa	Predicted RBP	5.44	□□□□□ -1.54
VMP1-216	ENST00000592790	TRIM41	Q8WV44	630 aa		5.43	□□□□□ -1.54
VMP1-216	ENST00000592790	ADRA2B	P18089	450 aa		5.43	□□□□□ -1.54
VMP1-216	ENST00000592790	UNC13A	Q9UPW8	1703 aa		5.4	□□□□□ -1.55
VMP1-216	ENST00000592790	RTN4	Q9NQC3	1192 aa	Known RBP	5.39	□□□□□ -1.55
VMP1-216	ENST00000592790	CSRNP3	Q8WYN3	585 aa		5.37	□□□□□ -1.55
VMP1-216	ENST00000592790	CCER1	Q8TC90	406 aa	Predicted RBP	5.34	□□□□□ -1.55
VMP1-216	ENST00000592790	APLP2	Q06481	763 aa		5.33	□□□□□ -1.56
VMP1-216	ENST00000592790	LOC105371045	A0A1W2PR82	267 aa		5.31	□□□□□ -1.56
VMP1-216	ENST00000592790	FAM9A	Q8IZU1	332 aa	Predicted RBP	5.31	□□□□□ -1.56
VMP1-216	ENST00000592790	MYO15B	Q96JP2	1530 aa		5.3	□□□□□ -1.56
VMP1-216	ENST00000592790	PPARGC1B	Q86YN6	1023 aa	Known RBP	5.29	□□□□□ -1.56
VMP1-216	ENST00000592790	SLC4A1AP	Q9BWU0	796 aa	Known RBP	5.27	□□□□□ -1.57
VMP1-216	ENST00000592790	ABCC9	O60706	1549 aa		5.24	□□□□□ -1.57
VMP1-216	ENST00000592790	RB1CC1	Q8TDY2	1594 aa		5.22	□□□□□ -1.57
VMP1-216	ENST00000592790	DIEXF	Q68CQ4	756 aa	Known RBP	5.22	□□□□□ -1.57
VMP1-216	ENST00000592790	CLSPN	Q9HAW4	1339 aa		5.22	□□□□□ -1.57
VMP1-216	ENST00000592790	UBTF	P17480	764 aa	Known RBP	5.22	□□□□□ -1.57
VMP1-216	ENST00000592790	PPP6R1	Q9UPN7	881 aa		5.21	□□□□□ -1.58
VMP1-216	ENST00000592790	ACIN1	Q9UKV3	1341 aa	Known RBP	5.2	□□□□□ -1.58
VMP1-216	ENST00000592790	SCRIB	Q14160	1630 aa		5.2	□□□□□ -1.58
VMP1-216	ENST00000592790	RSF1	Q96T23	1441 aa	Predicted RBP	5.19	□□□□□ -1.58
VMP1-216	ENST00000592790	EEA1	Q15075	1411 aa		5.19	□□□□□ -1.58
VMP1-216	ENST00000592790	NACAD	O15069	1562 aa		5.18	□□□□□ -1.58
VMP1-216	ENST00000592790	ZNF316	A6NFI3	1004 aa	Predicted RBP	5.16	□□□□□ -1.58
VMP1-216	ENST00000592790	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	5.15	□□□□□ -1.58
VMP1-216	ENST00000592790	ERICH6	Q7L0X2	663 aa		5.15	□□□□□ -1.59
VMP1-216	ENST00000592790	SENP3	Q9H4L4	574 aa	Predicted RBP	5.15	□□□□□ -1.59
VMP1-216	ENST00000592790	NEFL	P07196	543 aa		5.14	□□□□□ -1.59
VMP1-216	ENST00000592790	GTF3C3	Q9Y5Q9	886 aa		5.14	□□□□□ -1.59
VMP1-216	ENST00000592790	PRKCSH	P14314	528 aa	Predicted RBP	5.13	□□□□□ -1.59
VMP1-216	ENST00000592790	YTHDC1	Q96MU7	727 aa	Known RBP	5.11	□□□□□ -1.59
VMP1-216	ENST00000592790	SCAF1	Q9H7N4	1312 aa	Known RBP	5.11	□□□□□ -1.59
VMP1-216	ENST00000592790	BICRA	Q9NZM4	1560 aa		5.11	□□□□□ -1.59
VMP1-216	ENST00000592790	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	5.11	□□□□□ -1.59
VMP1-216	ENST00000592790	DAXX	Q9UER7	740 aa	Predicted RBP	5.1	□□□□□ -1.59
VMP1-216	ENST00000592790	TNIK	Q9UKE5	1360 aa		5.1	□□□□□ -1.59
VMP1-216	ENST00000592790	FOXD1	Q16676	465 aa		5.09	□□□□□ -1.59
VMP1-216	ENST00000592790	GOLGA3	Q08378	1498 aa		5.08	□□□□□ -1.6
VMP1-216	ENST00000592790	ZBTB22	O15209	634 aa		5.08	□□□□□ -1.6
VMP1-216	ENST00000592790	CEP162	Q5TB80	1403 aa		5.07	□□□□□ -1.6
VMP1-216	ENST00000592790	HNRNPUL2	Q1KMD3	747 aa	Known RBP	5.07	□□□□□ -1.6
VMP1-216	ENST00000592790	WRN	Q14191	1432 aa	Predicted RBP eCLIP	5.07	□□□□□ -1.6
VMP1-216	ENST00000592790	AMER1	Q5JTC6	1135 aa	Predicted RBP	5.06	□□□□□ -1.6
VMP1-216	ENST00000592790	NEUROD1	Q13562	356 aa		5.06	□□□□□ -1.6
VMP1-216	ENST00000592790	CEP164	Q9UPV0	1460 aa		5.05	□□□□□ -1.6
VMP1-216	ENST00000592790	TOP2A	P11388	1531 aa	Known RBP	5.03	□□□□□ -1.6
VMP1-216	ENST00000592790	CLIP1	P30622	1438 aa		5.02	□□□□□ -1.61
VMP1-216	ENST00000592790	MROH2B	Q7Z745	1585 aa		5.02	□□□□□ -1.61
VMP1-216	ENST00000592790	RANGAP1	P46060	587 aa	Predicted RBP	5	□□□□□ -1.61
VMP1-216	ENST00000592790	CECR2	Q9BXF3	1484 aa		5	□□□□□ -1.61
VMP1-216	ENST00000592790	MYT1L	Q9UL68	1186 aa		4.99	□□□□□ -1.61
VMP1-216	ENST00000592790	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.98	□□□□□ -1.61
VMP1-216	ENST00000592790	WIZ	O95785	1651 aa		4.98	□□□□□ -1.61
VMP1-216	ENST00000592790	NPM3	O75607	178 aa	Known RBP	4.98	□□□□□ -1.61
VMP1-216	ENST00000592790	VPS8	Q8N3P4	1428 aa		4.97	□□□□□ -1.61
VMP1-216	ENST00000592790	ANP32C	O43423	234 aa		4.97	□□□□□ -1.61
VMP1-216	ENST00000592790	PPP4R3CP	Q6ZMV5	832 aa		4.97	□□□□□ -1.61
VMP1-216	ENST00000592790	FKBP8	Q14318	412 aa		4.97	□□□□□ -1.61
VMP1-216	ENST00000592790	CCDC88B	A6NC98	1476 aa		4.96	□□□□□ -1.62
VMP1-216	ENST00000592790	MIER1	Q8N108	512 aa		4.96	□□□□□ -1.62
VMP1-216	ENST00000592790	SMARCA4	P51532	1647 aa		4.95	□□□□□ -1.62
VMP1-216	ENST00000592790	TIMELESS	Q9UNS1	1208 aa		4.95	□□□□□ -1.62
VMP1-216	ENST00000592790	ATP1B4	Q9UN42	357 aa	Predicted RBP	4.94	□□□□□ -1.62
VMP1-216	ENST00000592790	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.94	□□□□□ -1.62
VMP1-216	ENST00000592790	ITGAE	P38570	1179 aa		4.93	□□□□□ -1.62
VMP1-216	ENST00000592790	SOGA1	O94964	1423 aa		4.93	□□□□□ -1.62
VMP1-216	ENST00000592790	SMARCA2	P51531	1590 aa		4.93	□□□□□ -1.62
VMP1-216	ENST00000592790	ABCC8	Q09428	1581 aa		4.93	□□□□□ -1.62
VMP1-216	ENST00000592790	KIF21B	O75037	1637 aa		4.93	□□□□□ -1.62
VMP1-216	ENST00000592790	KIF27	Q86VH2	1401 aa		4.92	□□□□□ -1.62
VMP1-216	ENST00000592790	FAM50A	Q14320	339 aa	Known RBP	4.91	□□□□□ -1.62
VMP1-216	ENST00000592790	HAP1	P54257	671 aa	Predicted RBP	4.9	□□□□□ -1.62
VMP1-216	ENST00000592790	ANP32E	Q9BTT0	268 aa		4.9	□□□□□ -1.63
VMP1-216	ENST00000592790	TONSL	Q96HA7	1378 aa		4.9	□□□□□ -1.63
VMP1-216	ENST00000592790	BCL11A	Q9H165	835 aa		4.89	□□□□□ -1.63
VMP1-216	ENST00000592790	CCNB3	Q8WWL7	1395 aa		4.89	□□□□□ -1.63
VMP1-216	ENST00000592790	PABPN1	Q86U42	306 aa	Known RBP eCLIP	4.89	□□□□□ -1.63	3e-6	■■■■□ 22
VMP1-216	ENST00000592790	FHAD1	B1AJZ9	1412 aa		4.89	□□□□□ -1.63

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