RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 AEBP2Q6ZN18 517 aaPredicted RBP6.78□□□□□ -1.32
VMP1-216ENST00000592790 NISCHQ9Y2I1 1504 aa6.54□□□□□ -1.36
VMP1-216ENST00000592790 CHIC1Q5VXU3 224 aa6.47□□□□□ -1.37
VMP1-216ENST00000592790 PHF23Q9BUL5 403 aaPredicted RBP6□□□□□ -1.45
VMP1-216ENST00000592790 EHMT2Q96KQ7 1210 aa6□□□□□ -1.45
VMP1-216ENST00000592790 SUPT5HO00267 1087 aaKnown RBP5.75□□□□□ -1.49
VMP1-216ENST00000592790 SHROOM4Q9ULL8 1493 aa5.71□□□□□ -1.5
VMP1-216ENST00000592790 DCAF8L2P0C7V8 631 aa5.67□□□□□ -1.5
VMP1-216ENST00000592790 MYT1Q01538 1121 aa5.66□□□□□ -1.5
VMP1-216ENST00000592790 PELP1Q8IZL8 1130 aaKnown RBP5.65□□□□□ -1.51
VMP1-216ENST00000592790 ZEB1P37275 1124 aaPredicted RBP5.63□□□□□ -1.51
VMP1-216ENST00000592790 HRCP23327 699 aa5.6□□□□□ -1.51
VMP1-216ENST00000592790 TTBK1Q5TCY1 1321 aaPredicted RBP5.58□□□□□ -1.52
VMP1-216ENST00000592790 CCDC180Q9P1Z9 1646 aa5.58□□□□□ -1.52
VMP1-216ENST00000592790 PLPPR3Q6T4P5 718 aa5.56□□□□□ -1.52
VMP1-216ENST00000592790 SLC24A1O60721 1099 aa5.56□□□□□ -1.52
VMP1-216ENST00000592790 PCGF6Q9BYE7 350 aa5.56□□□□□ -1.52
VMP1-216ENST00000592790 KCNA4P22459 653 aa5.53□□□□□ -1.52
VMP1-216ENST00000592790 ZCCHC6Q5VYS8 1495 aaKnown RBP5.52□□□□□ -1.53
VMP1-216ENST00000592790 TRIM26Q12899 539 aaPredicted RBP5.51□□□□□ -1.53
VMP1-216ENST00000592790 DCAF1Q9Y4B6 1507 aa5.47□□□□□ -1.53
VMP1-216ENST00000592790 CENPBP07199 599 aaPredicted RBP5.44□□□□□ -1.54
VMP1-216ENST00000592790 TRIM41Q8WV44 630 aa5.43□□□□□ -1.54
VMP1-216ENST00000592790 ADRA2BP18089 450 aa5.43□□□□□ -1.54
VMP1-216ENST00000592790 UNC13AQ9UPW8 1703 aa5.4□□□□□ -1.55
VMP1-216ENST00000592790 RTN4Q9NQC3 1192 aaKnown RBP5.39□□□□□ -1.55
VMP1-216ENST00000592790 CSRNP3Q8WYN3 585 aa5.37□□□□□ -1.55
VMP1-216ENST00000592790 CCER1Q8TC90 406 aaPredicted RBP5.34□□□□□ -1.55
VMP1-216ENST00000592790 APLP2Q06481 763 aa5.33□□□□□ -1.56
VMP1-216ENST00000592790 LOC105371045A0A1W2PR82 267 aa5.31□□□□□ -1.56
VMP1-216ENST00000592790 FAM9AQ8IZU1 332 aaPredicted RBP5.31□□□□□ -1.56
VMP1-216ENST00000592790 MYO15BQ96JP2 1530 aa5.3□□□□□ -1.56
VMP1-216ENST00000592790 PPARGC1BQ86YN6 1023 aaKnown RBP5.29□□□□□ -1.56
VMP1-216ENST00000592790 SLC4A1APQ9BWU0 796 aaKnown RBP5.27□□□□□ -1.57
VMP1-216ENST00000592790 ABCC9O60706 1549 aa5.24□□□□□ -1.57
VMP1-216ENST00000592790 RB1CC1Q8TDY2 1594 aa5.22□□□□□ -1.57
VMP1-216ENST00000592790 DIEXFQ68CQ4 756 aaKnown RBP5.22□□□□□ -1.57
VMP1-216ENST00000592790 CLSPNQ9HAW4 1339 aa5.22□□□□□ -1.57
VMP1-216ENST00000592790 UBTFP17480 764 aaKnown RBP5.22□□□□□ -1.57
VMP1-216ENST00000592790 PPP6R1Q9UPN7 881 aa5.21□□□□□ -1.58
VMP1-216ENST00000592790 ACIN1Q9UKV3 1341 aaKnown RBP5.2□□□□□ -1.58
VMP1-216ENST00000592790 SCRIBQ14160 1630 aa5.2□□□□□ -1.58
VMP1-216ENST00000592790 RSF1Q96T23 1441 aaPredicted RBP5.19□□□□□ -1.58
VMP1-216ENST00000592790 EEA1Q15075 1411 aa5.19□□□□□ -1.58
VMP1-216ENST00000592790 NACADO15069 1562 aa5.18□□□□□ -1.58
VMP1-216ENST00000592790 ZNF316A6NFI3 1004 aaPredicted RBP5.16□□□□□ -1.58
VMP1-216ENST00000592790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.15□□□□□ -1.58
VMP1-216ENST00000592790 ERICH6Q7L0X2 663 aa5.15□□□□□ -1.59
VMP1-216ENST00000592790 SENP3Q9H4L4 574 aaPredicted RBP5.15□□□□□ -1.59
VMP1-216ENST00000592790 NEFLP07196 543 aa5.14□□□□□ -1.59
VMP1-216ENST00000592790 GTF3C3Q9Y5Q9 886 aa5.14□□□□□ -1.59
VMP1-216ENST00000592790 PRKCSHP14314 528 aaPredicted RBP5.13□□□□□ -1.59
VMP1-216ENST00000592790 YTHDC1Q96MU7 727 aaKnown RBP5.11□□□□□ -1.59
VMP1-216ENST00000592790 SCAF1Q9H7N4 1312 aaKnown RBP5.11□□□□□ -1.59
VMP1-216ENST00000592790 BICRAQ9NZM4 1560 aa5.11□□□□□ -1.59
VMP1-216ENST00000592790 BAZ1AQ9NRL2 1556 aaPredicted RBP5.11□□□□□ -1.59
VMP1-216ENST00000592790 DAXXQ9UER7 740 aaPredicted RBP5.1□□□□□ -1.59
VMP1-216ENST00000592790 TNIKQ9UKE5 1360 aa5.1□□□□□ -1.59
VMP1-216ENST00000592790 FOXD1Q16676 465 aa5.09□□□□□ -1.59
VMP1-216ENST00000592790 GOLGA3Q08378 1498 aa5.08□□□□□ -1.6
VMP1-216ENST00000592790 ZBTB22O15209 634 aa5.08□□□□□ -1.6
VMP1-216ENST00000592790 CEP162Q5TB80 1403 aa5.07□□□□□ -1.6
VMP1-216ENST00000592790 HNRNPUL2Q1KMD3 747 aaKnown RBP5.07□□□□□ -1.6
VMP1-216ENST00000592790 WRNQ14191 1432 aaPredicted RBP eCLIP5.07□□□□□ -1.6
VMP1-216ENST00000592790 AMER1Q5JTC6 1135 aaPredicted RBP5.06□□□□□ -1.6
VMP1-216ENST00000592790 NEUROD1Q13562 356 aa5.06□□□□□ -1.6
VMP1-216ENST00000592790 CEP164Q9UPV0 1460 aa5.05□□□□□ -1.6
VMP1-216ENST00000592790 TOP2AP11388 1531 aaKnown RBP5.03□□□□□ -1.6
VMP1-216ENST00000592790 CLIP1P30622 1438 aa5.02□□□□□ -1.61
VMP1-216ENST00000592790 MROH2BQ7Z745 1585 aa5.02□□□□□ -1.61
VMP1-216ENST00000592790 RANGAP1P46060 587 aaPredicted RBP5□□□□□ -1.61
VMP1-216ENST00000592790 CECR2Q9BXF3 1484 aa5□□□□□ -1.61
VMP1-216ENST00000592790 MYT1LQ9UL68 1186 aa4.99□□□□□ -1.61
VMP1-216ENST00000592790 BAZ1BQ9UIG0 1483 aaKnown RBP4.98□□□□□ -1.61
VMP1-216ENST00000592790 WIZO95785 1651 aa4.98□□□□□ -1.61
VMP1-216ENST00000592790 NPM3O75607 178 aaKnown RBP4.98□□□□□ -1.61
VMP1-216ENST00000592790 VPS8Q8N3P4 1428 aa4.97□□□□□ -1.61
VMP1-216ENST00000592790 ANP32CO43423 234 aa4.97□□□□□ -1.61
VMP1-216ENST00000592790 PPP4R3CPQ6ZMV5 832 aa4.97□□□□□ -1.61
VMP1-216ENST00000592790 FKBP8Q14318 412 aa4.97□□□□□ -1.61
VMP1-216ENST00000592790 CCDC88BA6NC98 1476 aa4.96□□□□□ -1.62
VMP1-216ENST00000592790 MIER1Q8N108 512 aa4.96□□□□□ -1.62
VMP1-216ENST00000592790 SMARCA4P51532 1647 aa4.95□□□□□ -1.62
VMP1-216ENST00000592790 TIMELESSQ9UNS1 1208 aa4.95□□□□□ -1.62
VMP1-216ENST00000592790 ATP1B4Q9UN42 357 aaPredicted RBP4.94□□□□□ -1.62
VMP1-216ENST00000592790 CDK11AQ9UQ88 783 aaPredicted RBP4.94□□□□□ -1.62
VMP1-216ENST00000592790 ITGAEP38570 1179 aa4.93□□□□□ -1.62
VMP1-216ENST00000592790 SOGA1O94964 1423 aa4.93□□□□□ -1.62
VMP1-216ENST00000592790 SMARCA2P51531 1590 aa4.93□□□□□ -1.62
VMP1-216ENST00000592790 ABCC8Q09428 1581 aa4.93□□□□□ -1.62
VMP1-216ENST00000592790 KIF21BO75037 1637 aa4.93□□□□□ -1.62
VMP1-216ENST00000592790 KIF27Q86VH2 1401 aa4.92□□□□□ -1.62
VMP1-216ENST00000592790 FAM50AQ14320 339 aaKnown RBP4.91□□□□□ -1.62
VMP1-216ENST00000592790 HAP1P54257 671 aaPredicted RBP4.9□□□□□ -1.62
VMP1-216ENST00000592790 ANP32EQ9BTT0 268 aa4.9□□□□□ -1.63
VMP1-216ENST00000592790 TONSLQ96HA7 1378 aa4.9□□□□□ -1.63
VMP1-216ENST00000592790 BCL11AQ9H165 835 aa4.89□□□□□ -1.63
VMP1-216ENST00000592790 CCNB3Q8WWL7 1395 aa4.89□□□□□ -1.63
VMP1-216ENST00000592790 PABPN1Q86U42 306 aaKnown RBP eCLIP4.89□□□□□ -1.633e-6■■■■□ 22
VMP1-216ENST00000592790 FHAD1B1AJZ9 1412 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms