RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PNPLA6Q8IY17 1366 aa21.3■■□□□ 1
VPS53-215ENST00000573028 MLECQ14165 292 aa21.3■■□□□ 1
VPS53-215ENST00000573028 GRPEL1Q9HAV7 217 aa21.29■■□□□ 1
VPS53-215ENST00000573028 MRE11P49959 708 aa21.28■■□□□ 1
VPS53-215ENST00000573028 CALD1Q05682 793 aaKnown RBP21.28■■□□□ 1
VPS53-215ENST00000573028 SNX21Q969T3 373 aa21.28■■□□□ 1
VPS53-215ENST00000573028 GBP4Q96PP9 640 aa21.28■■□□□ 1
VPS53-215ENST00000573028 KIF2CQ99661 725 aa21.28■■□□□ 1
VPS53-215ENST00000573028 NAP1L5Q96NT1 182 aaPredicted RBP21.27■■□□□ 1
VPS53-215ENST00000573028 CHMP4BQ9H444 224 aaKnown RBP21.27■■□□□ 1
VPS53-215ENST00000573028 FAM135BQ49AJ0 1406 aa21.26■□□□□ 0.99
VPS53-215ENST00000573028 ZNF428Q96B54 188 aa21.26■□□□□ 0.99
VPS53-215ENST00000573028 IFT57Q9NWB7 429 aa21.26■□□□□ 0.99
VPS53-215ENST00000573028 MYO5BQ9ULV0 1848 aa21.26■□□□□ 0.99
VPS53-215ENST00000573028 KRT24Q2M2I5 525 aa21.25■□□□□ 0.99
VPS53-215ENST00000573028 C16orf71Q8IYS4 520 aaPredicted RBP21.25■□□□□ 0.99
VPS53-215ENST00000573028 ZFYVE9O95405 1425 aa21.25■□□□□ 0.99
VPS53-215ENST00000573028 K7ELQ4 463 aaPredicted RBP21.25■□□□□ 0.99
VPS53-215ENST00000573028 SOX12O15370 315 aa21.24■□□□□ 0.99
VPS53-215ENST00000573028 SSFA2P28290 1259 aa21.24■□□□□ 0.99
VPS53-215ENST00000573028 IL13P35225 146 aa21.24■□□□□ 0.99
VPS53-215ENST00000573028 TXNDC2Q86VQ3 553 aa21.24■□□□□ 0.99
VPS53-215ENST00000573028 GAS2L2Q8NHY3 880 aa21.24■□□□□ 0.99
VPS53-215ENST00000573028 CFAP74Q9C0B2 1584 aa21.24■□□□□ 0.99
VPS53-215ENST00000573028 CDC45O75419 566 aa21.23■□□□□ 0.99
VPS53-215ENST00000573028 DDIT3P35638 169 aa21.23■□□□□ 0.99
VPS53-215ENST00000573028 ARHGAP45Q92619 1136 aa21.23■□□□□ 0.99
VPS53-215ENST00000573028 DIP2CQ9Y2E4 1556 aa21.23■□□□□ 0.99
VPS53-215ENST00000573028 NUTM2FA1L443 756 aa21.22■□□□□ 0.99
VPS53-215ENST00000573028 GAS2L3Q86XJ1 694 aa21.22■□□□□ 0.99
VPS53-215ENST00000573028 COG3Q96JB2 828 aa21.22■□□□□ 0.99
VPS53-215ENST00000573028 API5Q9BZZ5 524 aaKnown RBP21.22■□□□□ 0.99
VPS53-215ENST00000573028 MED14O60244 1454 aa21.22■□□□□ 0.99
VPS53-215ENST00000573028 ARHGAP31Q2M1Z3 1444 aa21.22■□□□□ 0.99
VPS53-215ENST00000573028 RAB3GAP1Q15042 981 aa21.22■□□□□ 0.99
VPS53-215ENST00000573028 CFAP44Q96MT7 982 aa21.21■□□□□ 0.99
VPS53-215ENST00000573028 GSPT1P15170 499 aaKnown RBP21.21■□□□□ 0.99
VPS53-215ENST00000573028 ARHGEF40Q8TER5 1519 aa21.21■□□□□ 0.99
VPS53-215ENST00000573028 ABCC4O15439 1325 aa21.21■□□□□ 0.99
VPS53-215ENST00000573028 BRPF1P55201 1214 aaPredicted RBP21.2■□□□□ 0.98
VPS53-215ENST00000573028 OTUD7AQ8TE49 926 aaPredicted RBP21.2■□□□□ 0.98
VPS53-215ENST00000573028 CIZ1Q9ULV3 898 aaPredicted RBP21.2■□□□□ 0.98
VPS53-215ENST00000573028 AEBP1Q8IUX7 1158 aa21.2■□□□□ 0.98
VPS53-215ENST00000573028 TRIM44Q96DX7 344 aaPredicted RBP21.19■□□□□ 0.98
VPS53-215ENST00000573028 NCOA3Q9Y6Q9 1424 aa21.19■□□□□ 0.98
VPS53-215ENST00000573028 SMARCA5O60264 1052 aaPredicted RBP21.19■□□□□ 0.98
VPS53-215ENST00000573028 NCLP19338 710 aaKnown RBP21.19■□□□□ 0.98
VPS53-215ENST00000573028 ZNF853P0CG23 659 aa21.18■□□□□ 0.98
VPS53-215ENST00000573028 LMOD3Q0VAK6 560 aa21.18■□□□□ 0.98
VPS53-215ENST00000573028 PLEKHM2Q8IWE5 1019 aa21.18■□□□□ 0.98
VPS53-215ENST00000573028 ALKQ9UM73 1620 aa21.18■□□□□ 0.98
VPS53-215ENST00000573028 SULT6B1Q6IMI4 303 aa21.17■□□□□ 0.98
VPS53-215ENST00000573028 MCM10Q7L590 875 aa21.17■□□□□ 0.98
VPS53-215ENST00000573028 PTCH1Q13635 1447 aa21.17■□□□□ 0.98
VPS53-215ENST00000573028 WASLO00401 505 aaPredicted RBP21.17■□□□□ 0.98
VPS53-215ENST00000573028 NUDT16Q96DE0 195 aaKnown RBP21.17■□□□□ 0.98
VPS53-215ENST00000573028 TMEM131LA2VDJ0 1609 aa21.16■□□□□ 0.98
VPS53-215ENST00000573028 NEO1Q92859 1461 aa21.16■□□□□ 0.98
VPS53-215ENST00000573028 GOLGA6L22H0YM25 854 aa21.16■□□□□ 0.98
VPS53-215ENST00000573028 DDX49Q9Y6V7 483 aaKnown RBP21.16■□□□□ 0.98
VPS53-215ENST00000573028 ANKRD26Q9UPS8 1709 aa21.15■□□□□ 0.98
VPS53-215ENST00000573028 MIS18AQ9NYP9 233 aa21.14■□□□□ 0.98
VPS53-215ENST00000573028 MAP2P11137 1827 aaKnown RBP21.14■□□□□ 0.97
VPS53-215ENST00000573028 SKOR2Q2VWA4 1001 aaPredicted RBP21.14■□□□□ 0.97
VPS53-215ENST00000573028 SLC4A10Q6U841 1118 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 PIK3R4Q99570 1358 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 RIMS2Q9UQ26 1411 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 CLCN1P35523 988 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 TTC22Q5TAA0 569 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 MCTP1Q6DN14 999 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 DCTPP1Q9H773 170 aa21.13■□□□□ 0.97
VPS53-215ENST00000573028 ESPNB1AK53 854 aa21.12■□□□□ 0.97
VPS53-215ENST00000573028 PREX1Q8TCU6 1659 aa21.12■□□□□ 0.97
VPS53-215ENST00000573028 KIF20BQ96Q89 1820 aa21.12■□□□□ 0.97
VPS53-215ENST00000573028 MEIS3Q99687 375 aa21.11■□□□□ 0.97
VPS53-215ENST00000573028 ERBB4Q15303 1308 aa21.11■□□□□ 0.97
VPS53-215ENST00000573028 BAG4O95429 457 aaKnown RBP21.11■□□□□ 0.97
VPS53-215ENST00000573028 CCDC61Q9Y6R9 512 aa21.11■□□□□ 0.97
VPS53-215ENST00000573028 FOXD4L5Q5VV16 416 aaPredicted RBP21.1■□□□□ 0.97
VPS53-215ENST00000573028 CYB5RLQ6IPT4 315 aa21.1■□□□□ 0.97
VPS53-215ENST00000573028 FOXD4L4Q8WXT5 416 aaPredicted RBP21.1■□□□□ 0.97
VPS53-215ENST00000573028 PKP1Q13835 747 aa21.1■□□□□ 0.97
VPS53-215ENST00000573028 SDSP20132 328 aa21.09■□□□□ 0.97
VPS53-215ENST00000573028 RABEP1Q15276 862 aa21.09■□□□□ 0.97
VPS53-215ENST00000573028 EDC4Q6P2E9 1401 aaKnown RBP21.09■□□□□ 0.97
VPS53-215ENST00000573028 INTS3Q68E01 1043 aaKnown RBP21.09■□□□□ 0.97
VPS53-215ENST00000573028 ATP7BP35670 1465 aa21.09■□□□□ 0.97
VPS53-215ENST00000573028 ANKRD44Q8N8A2 993 aa21.08■□□□□ 0.97
VPS53-215ENST00000573028 CLTCQ00610 1675 aaKnown RBP21.08■□□□□ 0.96
VPS53-215ENST00000573028 SLC4A2P04920 1241 aa21.08■□□□□ 0.96
VPS53-215ENST00000573028 EIF4A2Q14240 407 aaKnown RBP21.08■□□□□ 0.96
VPS53-215ENST00000573028 CEP85Q6P2H3 762 aa21.08■□□□□ 0.96
VPS53-215ENST00000573028 USP26Q9BXU7 913 aa21.08■□□□□ 0.96
VPS53-215ENST00000573028 F6X3S4 739 aa21.07■□□□□ 0.96
VPS53-215ENST00000573028 CASC1Q6TDU7 716 aa21.07■□□□□ 0.96
VPS53-215ENST00000573028 ISY1Q9ULR0 285 aaKnown RBP21.07■□□□□ 0.96
VPS53-215ENST00000573028 METP08581 1390 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 CAVIN1Q6NZI2 390 aaKnown RBP21.06■□□□□ 0.96
VPS53-215ENST00000573028 AK9Q5TCS8 1911 aa21.06■□□□□ 0.96
VPS53-215ENST00000573028 CDC42BPGQ6DT37 1551 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms