RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 TRMT2AQ8IZ69 625 aaKnown RBP18.04■□□□□ 0.48
TPM1-215ENST00000558868 KCNH5Q8NCM2 988 aa18.04■□□□□ 0.48
TPM1-215ENST00000558868 RSPH6AQ9H0K4 717 aa18.04■□□□□ 0.48
TPM1-215ENST00000558868 FOXO3O43524 673 aa18.03■□□□□ 0.48
TPM1-215ENST00000558868 TMPOP42166 694 aaKnown RBP18.03■□□□□ 0.48
TPM1-215ENST00000558868 KRT28Q7Z3Y7 464 aa18.03■□□□□ 0.48
TPM1-215ENST00000558868 PRKAR2BP31323 418 aa18.02■□□□□ 0.48
TPM1-215ENST00000558868 EIF4A2Q14240 407 aaKnown RBP18.02■□□□□ 0.48
TPM1-215ENST00000558868 NEUROD2Q15784 382 aa18.02■□□□□ 0.48
TPM1-215ENST00000558868 RRP7AQ9Y3A4 280 aaKnown RBP18.02■□□□□ 0.48
TPM1-215ENST00000558868 RTL1A6NKG5 1358 aa18.02■□□□□ 0.47
TPM1-215ENST00000558868 MARF1Q9Y4F3 1742 aaKnown RBP18.01■□□□□ 0.47
TPM1-215ENST00000558868 SOX12O15370 315 aa18.01■□□□□ 0.47
TPM1-215ENST00000558868 PEAK1Q9H792 1746 aa18.01■□□□□ 0.47
TPM1-215ENST00000558868 NUTM2GQ5VZR2 741 aa18■□□□□ 0.47
TPM1-215ENST00000558868 MYH16Q9H6N6 1097 aa18■□□□□ 0.47
TPM1-215ENST00000558868 NPHP3Q7Z494 1330 aa17.99■□□□□ 0.47
TPM1-215ENST00000558868 TRPM3Q9HCF6 1732 aaPredicted RBP17.99■□□□□ 0.47
TPM1-215ENST00000558868 HSP90AB2PQ58FF8 381 aa17.99■□□□□ 0.47
TPM1-215ENST00000558868 XIRP1Q702N8 1843 aaKnown RBP17.99■□□□□ 0.47
TPM1-215ENST00000558868 ARHGEF10O15013 1369 aa17.99■□□□□ 0.47
TPM1-215ENST00000558868 IL16Q14005 1332 aa17.98■□□□□ 0.47
TPM1-215ENST00000558868 HMOX1P09601 288 aa17.98■□□□□ 0.47
TPM1-215ENST00000558868 RIPK4P57078 832 aa17.98■□□□□ 0.47
TPM1-215ENST00000558868 LMOD3Q0VAK6 560 aa17.98■□□□□ 0.47
TPM1-215ENST00000558868 NFE2L2Q16236 605 aa17.98■□□□□ 0.47
TPM1-215ENST00000558868 RRP1P56182 461 aaKnown RBP17.97■□□□□ 0.47
TPM1-215ENST00000558868 CALD1Q05682 793 aaKnown RBP17.97■□□□□ 0.47
TPM1-215ENST00000558868 HOXC9P31274 260 aa17.96■□□□□ 0.47
TPM1-215ENST00000558868 SLIT3O75094 1523 aa17.96■□□□□ 0.47
TPM1-215ENST00000558868 USP19O94966 1318 aa17.96■□□□□ 0.46
TPM1-215ENST00000558868 NFAT5O94916 1531 aa17.95■□□□□ 0.46
TPM1-215ENST00000558868 SULT6B1Q6IMI4 303 aa17.95■□□□□ 0.46
TPM1-215ENST00000558868 RGPD1P0DJD0 1748 aa17.95■□□□□ 0.46
TPM1-215ENST00000558868 XPCQ01831 940 aaPredicted RBP17.94■□□□□ 0.46
TPM1-215ENST00000558868 LMOD2Q6P5Q4 547 aa17.94■□□□□ 0.46
TPM1-215ENST00000558868 POTEAQ6S8J7 498 aa17.94■□□□□ 0.46
TPM1-215ENST00000558868 PELP1Q8IZL8 1130 aaKnown RBP17.94■□□□□ 0.46
TPM1-215ENST00000558868 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.94■□□□□ 0.46
TPM1-215ENST00000558868 IP6K1Q92551 441 aa17.94■□□□□ 0.46
TPM1-215ENST00000558868 SPINK5Q9NQ38 1064 aaPredicted RBP17.94■□□□□ 0.46
TPM1-215ENST00000558868 TRIM35Q9UPQ4 493 aa17.94■□□□□ 0.46
TPM1-215ENST00000558868 IRX6P78412 446 aaPredicted RBP17.93■□□□□ 0.46
TPM1-215ENST00000558868 PPP4R2Q9NY27 417 aa17.93■□□□□ 0.46
TPM1-215ENST00000558868 PHRF1Q9P1Y6 1649 aaKnown RBP17.93■□□□□ 0.46
TPM1-215ENST00000558868 GCP02774 474 aa17.92■□□□□ 0.46
TPM1-215ENST00000558868 PHACTR3Q96KR7 559 aa17.92■□□□□ 0.46
TPM1-215ENST00000558868 SLAIN2Q9P270 581 aa17.92■□□□□ 0.46
TPM1-215ENST00000558868 ALS2Q96Q42 1657 aa17.92■□□□□ 0.46
TPM1-215ENST00000558868 IGSF1Q8N6C5 1336 aa17.92■□□□□ 0.46
TPM1-215ENST00000558868 LTN1O94822 1766 aa17.91■□□□□ 0.46
TPM1-215ENST00000558868 CT47B1P0C2W7 299 aaPredicted RBP17.91■□□□□ 0.46
TPM1-215ENST00000558868 TNS3Q68CZ2 1445 aa17.9■□□□□ 0.46
TPM1-215ENST00000558868 BRINP3Q76B58 766 aa17.9■□□□□ 0.46
TPM1-215ENST00000558868 KDRP35968 1356 aa17.9■□□□□ 0.46
TPM1-215ENST00000558868 ARHGEF25Q86VW2 580 aa17.89■□□□□ 0.45
TPM1-215ENST00000558868 EYA1Q99502 592 aa17.89■□□□□ 0.45
TPM1-215ENST00000558868 PXDNQ92626 1479 aa17.88■□□□□ 0.45
TPM1-215ENST00000558868 TOM1O60784 492 aa17.88■□□□□ 0.45
TPM1-215ENST00000558868 AEBP1Q8IUX7 1158 aa17.88■□□□□ 0.45
TPM1-215ENST00000558868 SPATA31A3Q5VYP0 1347 aa17.87■□□□□ 0.45
TPM1-215ENST00000558868 GNAI1P63096 354 aa17.85■□□□□ 0.45
TPM1-215ENST00000558868 GAS2L2Q8NHY3 880 aa17.85■□□□□ 0.45
TPM1-215ENST00000558868 FANCIQ9NVI1 1328 aa17.85■□□□□ 0.45
TPM1-215ENST00000558868 IFT57Q9NWB7 429 aa17.85■□□□□ 0.45
TPM1-215ENST00000558868 SOS2Q07890 1332 aaPredicted RBP17.84■□□□□ 0.45
TPM1-215ENST00000558868 ZBTB7CA1YPR0 619 aa17.84■□□□□ 0.45
TPM1-215ENST00000558868 LTV1Q96GA3 475 aaPredicted RBP17.84■□□□□ 0.45
TPM1-215ENST00000558868 DDX17Q92841 729 aaKnown RBP17.83■□□□□ 0.44
TPM1-215ENST00000558868 ABCC6O95255 1503 aa17.82■□□□□ 0.44
TPM1-215ENST00000558868 HTATSF1O43719 755 aaKnown RBP17.82■□□□□ 0.44
TPM1-215ENST00000558868 DLG5Q8TDM6 1919 aa17.82■□□□□ 0.44
TPM1-215ENST00000558868 RARSP54136 660 aaKnown RBP17.8■□□□□ 0.44
TPM1-215ENST00000558868 RTF1Q92541 710 aaKnown RBP17.8■□□□□ 0.44
TPM1-215ENST00000558868 ZNF428Q96B54 188 aa17.8■□□□□ 0.44
TPM1-215ENST00000558868 ZNF853P0CG23 659 aa17.79■□□□□ 0.44
TPM1-215ENST00000558868 EXOSC9Q06265 439 aaKnown RBP17.79■□□□□ 0.44
TPM1-215ENST00000558868 ANKRD24Q8TF21 1146 aa17.79■□□□□ 0.44
TPM1-215ENST00000558868 UPF1Q92900 1129 aaKnown RBP eCLIP17.79■□□□□ 0.44
TPM1-215ENST00000558868 TSR2Q969E8 191 aaKnown RBP17.79■□□□□ 0.44
TPM1-215ENST00000558868 CFAP44Q96MT7 982 aa17.79■□□□□ 0.44
TPM1-215ENST00000558868 CPDO75976 1380 aa17.79■□□□□ 0.44
TPM1-215ENST00000558868 PLIN1O60240 522 aa17.78■□□□□ 0.44
TPM1-215ENST00000558868 PLEKHG5O94827 1062 aa17.78■□□□□ 0.44
TPM1-215ENST00000558868 MTHFSDQ2M296 383 aaKnown RBP17.78■□□□□ 0.44
TPM1-215ENST00000558868 LAS1LQ9Y4W2 734 aaKnown RBP17.78■□□□□ 0.44
TPM1-215ENST00000558868 NHSL1Q5SYE7 1610 aa17.77■□□□□ 0.44
TPM1-215ENST00000558868 CANXP27824 592 aaKnown RBP17.77■□□□□ 0.44
TPM1-215ENST00000558868 ZC3H6P61129 1189 aaKnown RBP17.77■□□□□ 0.44
TPM1-215ENST00000558868 PDE3AQ14432 1141 aa17.77■□□□□ 0.44
TPM1-215ENST00000558868 NBPF6Q5VWK0 638 aa17.77■□□□□ 0.44
TPM1-215ENST00000558868 NBPF4Q96M43 638 aa17.77■□□□□ 0.44
TPM1-215ENST00000558868 CRYBG1Q9Y4K1 1723 aa17.76■□□□□ 0.43
TPM1-215ENST00000558868 NCAPD2Q15021 1401 aa17.76■□□□□ 0.43
TPM1-215ENST00000558868 BCAR3O75815 825 aa17.76■□□□□ 0.43
TPM1-215ENST00000558868 HAP1P54257 671 aaPredicted RBP17.76■□□□□ 0.43
TPM1-215ENST00000558868 GNAT3A8MTJ3 354 aa17.75■□□□□ 0.43
TPM1-215ENST00000558868 MS4A1P11836 297 aa17.75■□□□□ 0.43
TPM1-215ENST00000558868 AMOTQ4VCS5 1084 aa17.75■□□□□ 0.43
TPM1-215ENST00000558868 EXOC6Q8TAG9 804 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms