RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 NISCHQ9Y2I1 1504 aa31.09■■■□□ 2.57
TPM1-215ENST00000558868 CCDC180Q9P1Z9 1646 aa27.16■■□□□ 1.94
TPM1-215ENST00000558868 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
TPM1-215ENST00000558868 ABCC9O60706 1549 aa25.88■■□□□ 1.73
TPM1-215ENST00000558868 DCAF1Q9Y4B6 1507 aa25.79■■□□□ 1.72
TPM1-215ENST00000558868 DNAJC5BQ9UF47 199 aa25.66■■□□□ 1.7
TPM1-215ENST00000558868 DCAF8L2P0C7V8 631 aa25.63■■□□□ 1.69
TPM1-215ENST00000558868 MYO15BQ96JP2 1530 aa25.5■■□□□ 1.67
TPM1-215ENST00000558868 NACADO15069 1562 aa25.31■■□□□ 1.64
TPM1-215ENST00000558868 SHROOM4Q9ULL8 1493 aa25.26■■□□□ 1.63
TPM1-215ENST00000558868 RB1CC1Q8TDY2 1594 aa25.08■■□□□ 1.61
TPM1-215ENST00000558868 SCRIBQ14160 1630 aa24.88■■□□□ 1.57
TPM1-215ENST00000558868 DNAJC5Q9H3Z4 198 aa24.56■■□□□ 1.52
TPM1-215ENST00000558868 UNC13AQ9UPW8 1703 aa24.45■■□□□ 1.5
TPM1-215ENST00000558868 SUPT5HO00267 1087 aaKnown RBP24.36■■□□□ 1.49
TPM1-215ENST00000558868 BICRAQ9NZM4 1560 aa24.22■■□□□ 1.47
TPM1-215ENST00000558868 RSF1Q96T23 1441 aaPredicted RBP24.1■■□□□ 1.45
TPM1-215ENST00000558868 PABPN1Q86U42 306 aaKnown RBP eCLIP24.09■■□□□ 1.45
TPM1-215ENST00000558868 CECR2Q9BXF3 1484 aa24.08■■□□□ 1.45
TPM1-215ENST00000558868 BAZ1AQ9NRL2 1556 aaPredicted RBP24.05■■□□□ 1.44
TPM1-215ENST00000558868 MROH2BQ7Z745 1585 aa23.97■■□□□ 1.43
TPM1-215ENST00000558868 SMARCA4P51532 1647 aa23.89■■□□□ 1.42
TPM1-215ENST00000558868 WIZO95785 1651 aa23.76■■□□□ 1.39
TPM1-215ENST00000558868 PEG3Q9GZU2 1588 aa23.63■■□□□ 1.37
TPM1-215ENST00000558868 TOP2AP11388 1531 aaKnown RBP23.6■■□□□ 1.37
TPM1-215ENST00000558868 SMARCA2P51531 1590 aa23.55■■□□□ 1.36
TPM1-215ENST00000558868 EIF4G1Q04637 1599 aaKnown RBP23.52■■□□□ 1.36
TPM1-215ENST00000558868 ATAD2BQ9ULI0 1458 aa23.49■■□□□ 1.35
TPM1-215ENST00000558868 BAZ1BQ9UIG0 1483 aaKnown RBP23.39■■□□□ 1.34
TPM1-215ENST00000558868 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
TPM1-215ENST00000558868 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
TPM1-215ENST00000558868 CCDC88BA6NC98 1476 aa23.32■■□□□ 1.32
TPM1-215ENST00000558868 CC2D2AQ9P2K1 1620 aa23.31■■□□□ 1.32
TPM1-215ENST00000558868 HMGXB3Q12766 1538 aa23.31■■□□□ 1.32
TPM1-215ENST00000558868 TRIM41Q8WV44 630 aa22.98■■□□□ 1.27
TPM1-215ENST00000558868 CUX2O14529 1486 aa22.81■■□□□ 1.24
TPM1-215ENST00000558868 CFTRP13569 1480 aa22.79■■□□□ 1.24
TPM1-215ENST00000558868 ABCC8Q09428 1581 aa22.77■■□□□ 1.24
TPM1-215ENST00000558868 CADPSQ9ULU8 1353 aa22.73■■□□□ 1.23
TPM1-215ENST00000558868 WRNQ14191 1432 aaPredicted RBP eCLIP22.72■■□□□ 1.23
TPM1-215ENST00000558868 PRDM2Q13029 1718 aa22.7■■□□□ 1.22
TPM1-215ENST00000558868 SYNJ1O43426 1573 aa22.56■■□□□ 1.2
TPM1-215ENST00000558868 LAMC3Q9Y6N6 1575 aa22.55■■□□□ 1.2
TPM1-215ENST00000558868 TOP2BQ02880 1626 aa22.53■■□□□ 1.2
TPM1-215ENST00000558868 BIVM-ERCC5R4GMW8 1640 aa22.51■■□□□ 1.19
TPM1-215ENST00000558868 EEA1Q15075 1411 aa22.5■■□□□ 1.19
TPM1-215ENST00000558868 FAM9AQ8IZU1 332 aaPredicted RBP22.46■■□□□ 1.19
TPM1-215ENST00000558868 FANCD2Q9BXW9 1451 aa22.46■■□□□ 1.19
TPM1-215ENST00000558868 CUX1P39880 1505 aa22.42■■□□□ 1.18
TPM1-215ENST00000558868 NESP48681 1621 aa22.41■■□□□ 1.18
TPM1-215ENST00000558868 PDS5BQ9NTI5 1447 aa22.4■■□□□ 1.18
TPM1-215ENST00000558868 LOC105371045A0A1W2PR82 267 aa22.39■■□□□ 1.17
TPM1-215ENST00000558868 ERCC6Q03468 1493 aa22.38■■□□□ 1.17
TPM1-215ENST00000558868 SOGA1O94964 1423 aa22.37■■□□□ 1.17
TPM1-215ENST00000558868 CEP164Q9UPV0 1460 aa22.34■■□□□ 1.17
TPM1-215ENST00000558868 CSRNP3Q8WYN3 585 aa22.3■■□□□ 1.16
TPM1-215ENST00000558868 DNMBPQ6XZF7 1577 aa22.28■■□□□ 1.16
TPM1-215ENST00000558868 RUSC2Q8N2Y8 1516 aa22.25■■□□□ 1.15
TPM1-215ENST00000558868 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
TPM1-215ENST00000558868 FGD5Q6ZNL6 1462 aa22.2■■□□□ 1.14
TPM1-215ENST00000558868 KIF27Q86VH2 1401 aa22.18■■□□□ 1.14
TPM1-215ENST00000558868 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
TPM1-215ENST00000558868 AEBP2Q6ZN18 517 aaPredicted RBP22.16■■□□□ 1.14
TPM1-215ENST00000558868 URB2Q14146 1524 aaKnown RBP22.14■■□□□ 1.13
TPM1-215ENST00000558868 KIF21BO75037 1637 aa22.13■■□□□ 1.13
TPM1-215ENST00000558868 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
TPM1-215ENST00000558868 POLA1P09884 1462 aaPredicted RBP22.09■■□□□ 1.13
TPM1-215ENST00000558868 EHMT2Q96KQ7 1210 aa22.08■■□□□ 1.13
TPM1-215ENST00000558868 MRC2Q9UBG0 1479 aa22.08■■□□□ 1.12
TPM1-215ENST00000558868 TNIKQ9UKE5 1360 aa22.06■■□□□ 1.12
TPM1-215ENST00000558868 ABCA10Q8WWZ4 1543 aa22.04■■□□□ 1.12
TPM1-215ENST00000558868 UBTFP17480 764 aaKnown RBP22.01■■□□□ 1.11
TPM1-215ENST00000558868 ERICH3Q5RHP9 1530 aa22■■□□□ 1.11
TPM1-215ENST00000558868 PRXQ9BXM0 1461 aa21.99■■□□□ 1.11
TPM1-215ENST00000558868 RAD54L2Q9Y4B4 1467 aa21.98■■□□□ 1.11
TPM1-215ENST00000558868 WDR62O43379 1518 aa21.94■■□□□ 1.1
TPM1-215ENST00000558868 THOC2Q8NI27 1593 aaKnown RBP21.94■■□□□ 1.1
TPM1-215ENST00000558868 IGF1RP08069 1367 aa21.93■■□□□ 1.1
TPM1-215ENST00000558868 RAPGEF2Q9Y4G8 1499 aa21.93■■□□□ 1.1
TPM1-215ENST00000558868 WDR97A6NE52 1622 aa21.92■■□□□ 1.1
TPM1-215ENST00000558868 CEP162Q5TB80 1403 aa21.89■■□□□ 1.1
TPM1-215ENST00000558868 TARBP1Q13395 1621 aaKnown RBP21.86■■□□□ 1.09
TPM1-215ENST00000558868 CARMIL1Q5VZK9 1371 aa21.85■■□□□ 1.09
TPM1-215ENST00000558868 ABCA5Q8WWZ7 1642 aa21.84■■□□□ 1.09
TPM1-215ENST00000558868 IFT140Q96RY7 1462 aa21.83■■□□□ 1.09
TPM1-215ENST00000558868 CUL7Q14999 1698 aa21.82■■□□□ 1.08
TPM1-215ENST00000558868 GAPVD1Q14C86 1478 aa21.81■■□□□ 1.08
TPM1-215ENST00000558868 TDRD9Q8NDG6 1382 aaKnown RBP21.78■■□□□ 1.08
TPM1-215ENST00000558868 CLIP1P30622 1438 aa21.75■■□□□ 1.07
TPM1-215ENST00000558868 GRIN2BQ13224 1484 aa21.66■■□□□ 1.06
TPM1-215ENST00000558868 PBRM1Q86U86 1689 aa21.66■■□□□ 1.06
TPM1-215ENST00000558868 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.053e-6■■■■□ 23
TPM1-215ENST00000558868 FHAD1B1AJZ9 1412 aa21.6■■□□□ 1.05
TPM1-215ENST00000558868 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
TPM1-215ENST00000558868 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
TPM1-215ENST00000558868 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
TPM1-215ENST00000558868 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
TPM1-215ENST00000558868 VPS8Q8N3P4 1428 aa21.56■■□□□ 1.04
TPM1-215ENST00000558868 EIF4G3O43432 1585 aaKnown RBP21.56■■□□□ 1.04
TPM1-215ENST00000558868 ADAMTS12P58397 1594 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms