RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MAP3K5Q99683 1374 aa18.2■□□□□ 0.5
SHMT2-230ENST00000557427 GCP02774 474 aa18.2■□□□□ 0.5
SHMT2-230ENST00000557427 ABTB2Q8N961 1025 aa18.2■□□□□ 0.5
SHMT2-230ENST00000557427 ITSN1Q15811 1721 aa18.2■□□□□ 0.5
SHMT2-230ENST00000557427 RAB3GAP2Q9H2M9 1393 aa18.19■□□□□ 0.5
SHMT2-230ENST00000557427 BCL9O00512 1426 aa18.19■□□□□ 0.5
SHMT2-230ENST00000557427 GOLGB1Q14789 3259 aaKnown RBP18.19■□□□□ 0.5
SHMT2-230ENST00000557427 SHANK3Q9BYB0 1731 aa18.18■□□□□ 0.5
SHMT2-230ENST00000557427 GPR162Q16538 588 aa18.18■□□□□ 0.5
SHMT2-230ENST00000557427 CDK19Q9BWU1 502 aa18.16■□□□□ 0.5
SHMT2-230ENST00000557427 PLEKHG3A1L390 1219 aa18.15■□□□□ 0.5
SHMT2-230ENST00000557427 TOPAZ1Q8N9V7 1692 aa18.15■□□□□ 0.5
SHMT2-230ENST00000557427 AATKQ6ZMQ8 1374 aa18.15■□□□□ 0.5
SHMT2-230ENST00000557427 TOM1L2Q6ZVM7 507 aa18.13■□□□□ 0.49
SHMT2-230ENST00000557427 NLRP13Q86W25 1043 aa18.13■□□□□ 0.49
SHMT2-230ENST00000557427 CCDC61Q9Y6R9 512 aa18.13■□□□□ 0.49
SHMT2-230ENST00000557427 WNK3Q9BYP7 1800 aa18.12■□□□□ 0.49
SHMT2-230ENST00000557427 ZBTB7CA1YPR0 619 aa18.12■□□□□ 0.49
SHMT2-230ENST00000557427 AXIN2Q9Y2T1 843 aa18.12■□□□□ 0.49
SHMT2-230ENST00000557427 PAPPAQ13219 1627 aa18.12■□□□□ 0.49
SHMT2-230ENST00000557427 ARHGEF28Q8N1W1 1705 aaKnown RBP18.12■□□□□ 0.49
SHMT2-230ENST00000557427 AKAP12Q02952 1782 aa18.11■□□□□ 0.49
SHMT2-230ENST00000557427 COL18A1P39060 1754 aa18.1■□□□□ 0.49
SHMT2-230ENST00000557427 ZNF827Q17R98 1081 aa18.1■□□□□ 0.49
SHMT2-230ENST00000557427 PELP1Q8IZL8 1130 aaKnown RBP18.09■□□□□ 0.49
SHMT2-230ENST00000557427 KDM2AQ9Y2K7 1162 aa18.09■□□□□ 0.49
SHMT2-230ENST00000557427 WDR17Q8IZU2 1322 aa18.08■□□□□ 0.49
SHMT2-230ENST00000557427 NLGN2Q8NFZ4 835 aa18.08■□□□□ 0.48
SHMT2-230ENST00000557427 CDCA7Q9BWT1 371 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-230ENST00000557427 KLHL34Q8N239 644 aa18.06■□□□□ 0.48
SHMT2-230ENST00000557427 CCER1Q8TC90 406 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-230ENST00000557427 LRRC4BQ9NT99 713 aa18.06■□□□□ 0.48
SHMT2-230ENST00000557427 SLIT3O75094 1523 aa18.06■□□□□ 0.48
SHMT2-230ENST00000557427 YBX3P16989 372 aaKnown RBP eCLIP18.05■□□□□ 0.489e-9■□□□□ 9.1
SHMT2-230ENST00000557427 DCAF11Q8TEB1 546 aa18.05■□□□□ 0.48
SHMT2-230ENST00000557427 EXOC5O00471 708 aa18.04■□□□□ 0.48
SHMT2-230ENST00000557427 ACSBG1Q96GR2 724 aa18.04■□□□□ 0.48
SHMT2-230ENST00000557427 COL24A1Q17RW2 1714 aa18.03■□□□□ 0.48
SHMT2-230ENST00000557427 NHSQ6T4R5 1651 aa18.03■□□□□ 0.48
SHMT2-230ENST00000557427 HSPA6P17066 643 aa18.03■□□□□ 0.48
SHMT2-230ENST00000557427 NLRP6P59044 892 aa18.03■□□□□ 0.48
SHMT2-230ENST00000557427 CARD10Q9BWT7 1032 aa18.03■□□□□ 0.48
SHMT2-230ENST00000557427 AKT1S1Q96B36 256 aa18.02■□□□□ 0.48
SHMT2-230ENST00000557427 ATP10DQ9P241 1426 aa18.02■□□□□ 0.48
SHMT2-230ENST00000557427 PPIP5K1Q6PFW1 1433 aa18.01■□□□□ 0.47
SHMT2-230ENST00000557427 RGPD5Q99666 1765 aa18.01■□□□□ 0.47
SHMT2-230ENST00000557427 SLC16A10Q8TF71 515 aa18■□□□□ 0.47
SHMT2-230ENST00000557427 PNPLA7Q6ZV29 1317 aa17.99■□□□□ 0.47
SHMT2-230ENST00000557427 CPSF1Q10570 1443 aaKnown RBP17.99■□□□□ 0.47
SHMT2-230ENST00000557427 ARHGEF25Q86VW2 580 aa17.99■□□□□ 0.47
SHMT2-230ENST00000557427 TNS2Q63HR2 1409 aa17.98■□□□□ 0.47
SHMT2-230ENST00000557427 POLD1P28340 1107 aa17.98■□□□□ 0.47
SHMT2-230ENST00000557427 BRD4O60885 1362 aaPredicted RBP17.98■□□□□ 0.47
SHMT2-230ENST00000557427 BTAF1O14981 1849 aa17.98■□□□□ 0.47
SHMT2-230ENST00000557427 USP6P35125 1406 aa17.98■□□□□ 0.47
SHMT2-230ENST00000557427 GRIN3BO60391 1043 aa17.97■□□□□ 0.47
SHMT2-230ENST00000557427 CABP2Q9NPB3 220 aa17.97■□□□□ 0.47
SHMT2-230ENST00000557427 PIK3C2AO00443 1686 aa17.96■□□□□ 0.47
SHMT2-230ENST00000557427 CSB-PGBD3P0DP91 1061 aa17.96■□□□□ 0.47
SHMT2-230ENST00000557427 TRPM1Q7Z4N2 1603 aa17.96■□□□□ 0.47
SHMT2-230ENST00000557427 QSER1Q2KHR3 1735 aa17.95■□□□□ 0.46
SHMT2-230ENST00000557427 GPBP1L1Q9HC44 474 aaPredicted RBP17.95■□□□□ 0.46
SHMT2-230ENST00000557427 SRPK2P78362 688 aaKnown RBP17.94■□□□□ 0.46
SHMT2-230ENST00000557427 CABP1Q9NZU7 370 aa17.94■□□□□ 0.46
SHMT2-230ENST00000557427 TUBGCP6Q96RT7 1819 aa17.93■□□□□ 0.46
SHMT2-230ENST00000557427 ABCC6O95255 1503 aa17.93■□□□□ 0.46
SHMT2-230ENST00000557427 ADCY9O60503 1353 aa17.93■□□□□ 0.46
SHMT2-230ENST00000557427 CCDC7Q96M83 1385 aa17.93■□□□□ 0.46
SHMT2-230ENST00000557427 KCNQ4P56696 695 aa17.93■□□□□ 0.46
SHMT2-230ENST00000557427 STAC3Q96MF2 364 aa17.93■□□□□ 0.46
SHMT2-230ENST00000557427 ZNF526Q8TF50 670 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-230ENST00000557427 SOX12O15370 315 aa17.91■□□□□ 0.46
SHMT2-230ENST00000557427 SLC27A3Q5K4L6 730 aa17.89■□□□□ 0.45
SHMT2-230ENST00000557427 TFCP2L1Q9NZI6 479 aa17.89■□□□□ 0.45
SHMT2-230ENST00000557427 NBPF1Q3BBV0 1214 aa17.88■□□□□ 0.45
SHMT2-230ENST00000557427 DNAJC5GQ8N7S2 189 aa17.88■□□□□ 0.45
SHMT2-230ENST00000557427 KCNH5Q8NCM2 988 aa17.88■□□□□ 0.45
SHMT2-230ENST00000557427 NFAT5O94916 1531 aa17.88■□□□□ 0.45
SHMT2-230ENST00000557427 KIF3CO14782 793 aa17.87■□□□□ 0.45
SHMT2-230ENST00000557427 KAT6BQ8WYB5 2073 aa17.87■□□□□ 0.45
SHMT2-230ENST00000557427 TTC21BQ7Z4L5 1316 aa17.86■□□□□ 0.45
SHMT2-230ENST00000557427 IL2RBP14784 551 aa17.85■□□□□ 0.45
SHMT2-230ENST00000557427 COL23A1Q86Y22 540 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-230ENST00000557427 NLRP2Q9NX02 1062 aa17.84■□□□□ 0.45
SHMT2-230ENST00000557427 QRICH2Q9H0J4 1663 aa17.83■□□□□ 0.45
SHMT2-230ENST00000557427 ERBB3P21860 1342 aa17.83■□□□□ 0.44
SHMT2-230ENST00000557427 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
SHMT2-230ENST00000557427 CENPJQ9HC77 1338 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-230ENST00000557427 NEUROD1Q13562 356 aa17.83■□□□□ 0.44
SHMT2-230ENST00000557427 MSL1Q68DK7 614 aa17.83■□□□□ 0.44
SHMT2-230ENST00000557427 SIN3AQ96ST3 1273 aa17.83■□□□□ 0.44
SHMT2-230ENST00000557427 COL13A1Q5TAT6 717 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-230ENST00000557427 KIAA1210Q9ULL0 1709 aa17.81■□□□□ 0.44
SHMT2-230ENST00000557427 APLP1P51693 650 aa17.8■□□□□ 0.44
SHMT2-230ENST00000557427 CD2APQ9Y5K6 639 aa17.8■□□□□ 0.44
SHMT2-230ENST00000557427 NSD2O96028 1365 aa17.79■□□□□ 0.44
SHMT2-230ENST00000557427 LY75O60449 1722 aa17.79■□□□□ 0.44
SHMT2-230ENST00000557427 MSH5O43196 834 aa17.79■□□□□ 0.44
SHMT2-230ENST00000557427 PRIM1P49642 420 aaKnown RBP17.78■□□□□ 0.44
SHMT2-230ENST00000557427 DDX54Q8TDD1 881 aaKnown RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms