RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 NCOA4Q13772 614 aa9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 TJAP1Q5JTD0 557 aa9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 TMEM164Q5U3C3 297 aa9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 PTCRAQ6ISU1 281 aaPredicted RBP9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 LARP1Q6PKG0 1096 aaKnown RBP9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 SH3RF1Q7Z6J0 888 aa9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 GNEQ9Y223 722 aaKnown RBP9.24□□□□□ -0.93
HMGB1P46-201ENST00000520062 DEPDC4Q8N2C3 294 aa9.23□□□□□ -0.93
HMGB1P46-201ENST00000520062 CCDC24Q8N4L8 307 aa9.23□□□□□ -0.93
HMGB1P46-201ENST00000520062 RGS22Q8NE09 1264 aa9.23□□□□□ -0.93
HMGB1P46-201ENST00000520062 STK32AQ8WU08 396 aa9.23□□□□□ -0.93
HMGB1P46-201ENST00000520062 RASA1P20936 1047 aa9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 PTK7Q13308 1070 aa9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 EML3Q32P44 896 aa9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 CRTC2Q53ET0 693 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 TRAF7Q6Q0C0 670 aa9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 BPHLQ86WA6 291 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 TRIM50Q86XT4 487 aa9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 DZIP3Q86Y13 1208 aaKnown RBP9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 IVNS1ABPQ9Y6Y0 642 aa9.22□□□□□ -0.93
HMGB1P46-201ENST00000520062 CDCA7Q9BWT1 371 aaPredicted RBP9.21□□□□□ -0.94
HMGB1P46-201ENST00000520062 POTEMA6NI47 508 aa9.2□□□□□ -0.94
HMGB1P46-201ENST00000520062 CCDC125Q86Z20 511 aa9.2□□□□□ -0.94
HMGB1P46-201ENST00000520062 ATP1A2P50993 1020 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 RNF20Q5VTR2 975 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 SND1Q7KZF4 910 aaKnown RBP eCLIP9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 ANKMY2Q8IV38 441 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 ZNF511Q8NB15 262 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 FAM200AQ8TCP9 573 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 ZNF516Q92618 1163 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 NOD1Q9Y239 953 aa9.19□□□□□ -0.94
HMGB1P46-201ENST00000520062 MAGEB6P1A0A0J9YX57 407 aa9.18□□□□□ -0.94
HMGB1P46-201ENST00000520062 SWI5Q1ZZU3 235 aa9.18□□□□□ -0.94
HMGB1P46-201ENST00000520062 ERFEQ4G0M1 354 aa9.18□□□□□ -0.94
HMGB1P46-201ENST00000520062 BAP1Q92560 729 aa9.18□□□□□ -0.94
HMGB1P46-201ENST00000520062 CLP1Q92989 425 aaKnown RBP9.18□□□□□ -0.94
HMGB1P46-201ENST00000520062 DOLKQ9UPQ8 538 aa9.18□□□□□ -0.94
HMGB1P46-201ENST00000520062 FAM69CQ0P6D2 419 aa9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 NBPF20Q3BBV1 942 aa9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 LARGE2Q8N3Y3 721 aa9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 OGFOD1Q8N543 542 aa9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 CCER1Q8TC90 406 aaPredicted RBP9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 C1QTNF2Q9BXJ5 285 aa9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 CARD14Q9BXL6 1004 aa9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 CDV3Q9UKY7 258 aaKnown RBP9.17□□□□□ -0.94
HMGB1P46-201ENST00000520062 S1PR4O95977 384 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 SSFA2P28290 1259 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 PTPN5P54829 565 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 AGERQ15109 404 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 TXNDC2Q86VQ3 553 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 TRMT44Q8IYL2 757 aaKnown RBP9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 SEPT12Q8IYM1 358 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 SLC10A4Q96EP9 437 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 CCDC85AQ96PX6 553 aaPredicted RBP9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 DNAAF2Q9NVR5 837 aaKnown RBP9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 MTMR7Q9Y216 660 aa9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 FCF1Q9Y324 198 aaKnown RBP9.16□□□□□ -0.94
HMGB1P46-201ENST00000520062 CLDN10P78369 228 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 CCDC27Q2M243 656 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 PHLDB3Q6NSJ2 640 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 SIX5Q8N196 739 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 FOXJ1Q92949 421 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 SIRT1Q96EB6 747 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 PCDH10Q9P2E7 1040 aa9.15□□□□□ -0.94
HMGB1P46-201ENST00000520062 ESPNB1AK53 854 aa9.14□□□□□ -0.95
HMGB1P46-201ENST00000520062 GIGYF1O75420 1035 aaPredicted RBP9.14□□□□□ -0.95
HMGB1P46-201ENST00000520062 C4orf48Q5BLP8 95 aa9.14□□□□□ -0.95
HMGB1P46-201ENST00000520062 ARID4AP29374 1257 aaPredicted RBP9.13□□□□□ -0.95
HMGB1P46-201ENST00000520062 DPYDQ12882 1025 aa9.13□□□□□ -0.95
HMGB1P46-201ENST00000520062 TSGA10IPQ3SY00 556 aa9.13□□□□□ -0.95
HMGB1P46-201ENST00000520062 LINC01559Q495D7 138 aa9.13□□□□□ -0.95
HMGB1P46-201ENST00000520062 DKK1O94907 266 aa9.12□□□□□ -0.95
HMGB1P46-201ENST00000520062 NKX2-3Q8TAU0 364 aa9.12□□□□□ -0.95
HMGB1P46-201ENST00000520062 ZNF594Q96JF6 807 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P46-201ENST00000520062 SH3BP2P78314 561 aa9.11□□□□□ -0.95
HMGB1P46-201ENST00000520062 GTF2IP78347 998 aa9.11□□□□□ -0.95
HMGB1P46-201ENST00000520062 USP4Q13107 963 aa9.11□□□□□ -0.95
HMGB1P46-201ENST00000520062 OXLD1Q5BKU9 147 aa9.11□□□□□ -0.95
HMGB1P46-201ENST00000520062 C1orf216Q8TAB5 229 aa9.11□□□□□ -0.95
HMGB1P46-201ENST00000520062 SLAIN2Q9P270 581 aa9.11□□□□□ -0.95
HMGB1P46-201ENST00000520062 ZBTB7BO15156 539 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P46-201ENST00000520062 ATP2B4P23634 1241 aa9.1□□□□□ -0.95
HMGB1P46-201ENST00000520062 SEC13P55735 322 aa9.1□□□□□ -0.95
HMGB1P46-201ENST00000520062 RBM19Q9Y4C8 960 aaKnown RBP9.1□□□□□ -0.95
HMGB1P46-201ENST00000520062 KIAA1024Q9UPX6 916 aa9.09□□□□□ -0.95
HMGB1P46-201ENST00000520062 MAP4K5Q9Y4K4 846 aa9.09□□□□□ -0.95
HMGB1P46-201ENST00000520062 ZBTB24O43167 697 aaPredicted RBP9.08□□□□□ -0.96
HMGB1P46-201ENST00000520062 CCDC102BQ68D86 513 aa9.08□□□□□ -0.96
HMGB1P46-201ENST00000520062 AMOTL2Q9Y2J4 779 aa9.08□□□□□ -0.96
HMGB1P46-201ENST00000520062 PCDHB11Q9Y5F2 797 aa9.08□□□□□ -0.96
HMGB1P46-201ENST00000520062 PCDHGA11Q9Y5H2 935 aa9.08□□□□□ -0.96
HMGB1P46-201ENST00000520062 ITGBL1O95965 494 aaPredicted RBP9.07□□□□□ -0.96
HMGB1P46-201ENST00000520062 VARSP26640 1264 aaKnown RBP9.07□□□□□ -0.96
HMGB1P46-201ENST00000520062 WNT7BP56706 349 aa9.07□□□□□ -0.96
HMGB1P46-201ENST00000520062 TRIM52Q96A61 297 aa9.07□□□□□ -0.96
HMGB1P46-201ENST00000520062 GGCXP38435 758 aa9.06□□□□□ -0.96
HMGB1P46-201ENST00000520062 KCNC4Q03721 635 aa9.06□□□□□ -0.96
HMGB1P46-201ENST00000520062 TRIM32Q13049 653 aa9.06□□□□□ -0.96
HMGB1P46-201ENST00000520062 FOXD4L5Q5VV16 416 aaPredicted RBP9.06□□□□□ -0.96
HMGB1P46-201ENST00000520062 CDAN1Q8IWY9 1227 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms