RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 FAM69CQ0P6D2 419 aa25.86■■□□□ 1.73
CLK3-202ENST00000395066 A2ML1A8K2U0 1454 aa25.85■■□□□ 1.73
CLK3-202ENST00000395066 RIMS2Q9UQ26 1411 aa25.85■■□□□ 1.73
CLK3-202ENST00000395066 RRAGDQ9NQL2 400 aaPredicted RBP25.84■■□□□ 1.73
CLK3-202ENST00000395066 CHMP5Q9NZZ3 219 aa25.84■■□□□ 1.73
CLK3-202ENST00000395066 ATP7BP35670 1465 aa25.84■■□□□ 1.73
CLK3-202ENST00000395066 TWISTNBQ3B726 338 aaPredicted RBP25.84■■□□□ 1.73
CLK3-202ENST00000395066 WASLO00401 505 aaPredicted RBP25.84■■□□□ 1.73
CLK3-202ENST00000395066 GNAI1P63096 354 aa25.83■■□□□ 1.73
CLK3-202ENST00000395066 METP08581 1390 aa25.83■■□□□ 1.73
CLK3-202ENST00000395066 GOLGA6L3A6NEY3 463 aa25.82■■□□□ 1.72
CLK3-202ENST00000395066 IFT57Q9NWB7 429 aa25.82■■□□□ 1.72
CLK3-202ENST00000395066 FOXD4L1Q9NU39 408 aa25.82■■□□□ 1.72
CLK3-202ENST00000395066 ZNF692Q9BU19 519 aaPredicted RBP25.81■■□□□ 1.72
CLK3-202ENST00000395066 TSPOAP1O95153 1857 aa25.81■■□□□ 1.72
CLK3-202ENST00000395066 ZNF853P0CG23 659 aa25.81■■□□□ 1.72
CLK3-202ENST00000395066 KRT24Q2M2I5 525 aa25.81■■□□□ 1.72
CLK3-202ENST00000395066 NUDT16Q96DE0 195 aaKnown RBP25.81■■□□□ 1.72
CLK3-202ENST00000395066 RIMBP3CA6NJZ7 1639 aa25.8■■□□□ 1.72
CLK3-202ENST00000395066 RIMBP3BA6NNM3 1639 aa25.8■■□□□ 1.72
CLK3-202ENST00000395066 RIMBP3Q9UFD9 1639 aa25.8■■□□□ 1.72
CLK3-202ENST00000395066 FSD2A1L4K1 749 aa25.8■■□□□ 1.72
CLK3-202ENST00000395066 BRPF1P55201 1214 aaPredicted RBP25.8■■□□□ 1.72
CLK3-202ENST00000395066 CPS1P31327 1500 aa25.8■■□□□ 1.72
CLK3-202ENST00000395066 XRCC6P12956 609 aaKnown RBP eCLIP25.8■■□□□ 1.72
CLK3-202ENST00000395066 RBM25P49756 843 aaKnown RBP25.8■■□□□ 1.72
CLK3-202ENST00000395066 CPSF1Q10570 1443 aaKnown RBP25.79■■□□□ 1.72
CLK3-202ENST00000395066 PTCH1Q13635 1447 aa25.79■■□□□ 1.72
CLK3-202ENST00000395066 CD2BP2O95400 341 aaKnown RBP25.79■■□□□ 1.72
CLK3-202ENST00000395066 BMP2KLQ5H9B9 411 aa25.79■■□□□ 1.72
CLK3-202ENST00000395066 AEBP1Q8IUX7 1158 aa25.79■■□□□ 1.72
CLK3-202ENST00000395066 COG3Q96JB2 828 aa25.79■■□□□ 1.72
CLK3-202ENST00000395066 EDC4Q6P2E9 1401 aaKnown RBP25.78■■□□□ 1.72
CLK3-202ENST00000395066 ZNF428Q96B54 188 aa25.78■■□□□ 1.72
CLK3-202ENST00000395066 RBM42Q9BTD8 480 aaKnown RBP25.78■■□□□ 1.72
CLK3-202ENST00000395066 SETD1AO15047 1707 aaKnown RBP25.78■■□□□ 1.72
CLK3-202ENST00000395066 DLG5Q8TDM6 1919 aa25.78■■□□□ 1.72
CLK3-202ENST00000395066 NUTM2FA1L443 756 aa25.77■■□□□ 1.72
CLK3-202ENST00000395066 TBC1D9Q6ZT07 1266 aa25.77■■□□□ 1.72
CLK3-202ENST00000395066 KIF2CQ99661 725 aa25.77■■□□□ 1.72
CLK3-202ENST00000395066 ABCC4O15439 1325 aa25.77■■□□□ 1.72
CLK3-202ENST00000395066 TRAK2O60296 914 aa25.77■■□□□ 1.72
CLK3-202ENST00000395066 CALD1Q05682 793 aaKnown RBP25.76■■□□□ 1.71
CLK3-202ENST00000395066 UBE2Q2Q8WVN8 375 aa25.76■■□□□ 1.71
CLK3-202ENST00000395066 GCC1Q96CN9 775 aa25.76■■□□□ 1.71
CLK3-202ENST00000395066 CFAP44Q96MT7 982 aa25.76■■□□□ 1.71
CLK3-202ENST00000395066 DLC1Q96QB1 1528 aa25.76■■□□□ 1.71
CLK3-202ENST00000395066 PANK2Q9BZ23 570 aa25.76■■□□□ 1.71
CLK3-202ENST00000395066 ARHGAP45Q92619 1136 aa25.76■■□□□ 1.71
CLK3-202ENST00000395066 PIK3R4Q99570 1358 aa25.75■■□□□ 1.71
CLK3-202ENST00000395066 CDK12Q9NYV4 1490 aaPredicted RBP25.75■■□□□ 1.71
CLK3-202ENST00000395066 HSP90AB1P08238 724 aaKnown RBP25.74■■□□□ 1.71
CLK3-202ENST00000395066 SOX12O15370 315 aa25.73■■□□□ 1.71
CLK3-202ENST00000395066 CCDC61Q9Y6R9 512 aa25.72■■□□□ 1.71
CLK3-202ENST00000395066 PRR36Q9H6K5 1346 aa25.72■■□□□ 1.71
CLK3-202ENST00000395066 NRXN3Q9Y4C0 1643 aa25.71■■□□□ 1.71
CLK3-202ENST00000395066 DDIT3P35638 169 aa25.71■■□□□ 1.71
CLK3-202ENST00000395066 C16orf71Q8IYS4 520 aaPredicted RBP25.71■■□□□ 1.71
CLK3-202ENST00000395066 NCOA3Q9Y6Q9 1424 aa25.71■■□□□ 1.71
CLK3-202ENST00000395066 SULT6B1Q6IMI4 303 aa25.7■■□□□ 1.71
CLK3-202ENST00000395066 GSPT1P15170 499 aaKnown RBP25.7■■□□□ 1.7
CLK3-202ENST00000395066 MCM10Q7L590 875 aa25.7■■□□□ 1.7
CLK3-202ENST00000395066 TNPO1Q92973 898 aaKnown RBP25.69■■□□□ 1.7
CLK3-202ENST00000395066 SNX21Q969T3 373 aa25.69■■□□□ 1.7
CLK3-202ENST00000395066 APBB1O00213 710 aa25.69■■□□□ 1.7
CLK3-202ENST00000395066 KNDC1Q76NI1 1749 aa25.69■■□□□ 1.7
CLK3-202ENST00000395066 SPATA31D1Q6ZQQ2 1576 aa25.68■■□□□ 1.7
CLK3-202ENST00000395066 AATKQ6ZMQ8 1374 aa25.68■■□□□ 1.7
CLK3-202ENST00000395066 API5Q9BZZ5 524 aaKnown RBP25.67■■□□□ 1.7
CLK3-202ENST00000395066 HSP90AA1P07900 732 aaKnown RBP25.67■■□□□ 1.7
CLK3-202ENST00000395066 LMOD3Q0VAK6 560 aa25.67■■□□□ 1.7
CLK3-202ENST00000395066 EIF4A2Q14240 407 aaKnown RBP25.67■■□□□ 1.7
CLK3-202ENST00000395066 OTUD7AQ8TE49 926 aaPredicted RBP25.67■■□□□ 1.7
CLK3-202ENST00000395066 DDX11L8A8MPP1 907 aa25.66■■□□□ 1.7
CLK3-202ENST00000395066 CHMP4BQ9H444 224 aaKnown RBP25.66■■□□□ 1.7
CLK3-202ENST00000395066 MRE11P49959 708 aa25.65■■□□□ 1.7
CLK3-202ENST00000395066 PLEKHM2Q8IWE5 1019 aa25.65■■□□□ 1.7
CLK3-202ENST00000395066 MIS18AQ9NYP9 233 aa25.65■■□□□ 1.7
CLK3-202ENST00000395066 SMARCA5O60264 1052 aaPredicted RBP25.63■■□□□ 1.69
CLK3-202ENST00000395066 HSP90AB2PQ58FF8 381 aa25.63■■□□□ 1.69
CLK3-202ENST00000395066 CDC45O75419 566 aa25.62■■□□□ 1.69
CLK3-202ENST00000395066 CLCN1P35523 988 aa25.62■■□□□ 1.69
CLK3-202ENST00000395066 GAS2L2Q8NHY3 880 aa25.62■■□□□ 1.69
CLK3-202ENST00000395066 MON2Q7Z3U7 1717 aa25.62■■□□□ 1.69
CLK3-202ENST00000395066 K7ELQ4 463 aaPredicted RBP25.6■■□□□ 1.69
CLK3-202ENST00000395066 DIP2BQ9P265 1576 aa25.6■■□□□ 1.69
CLK3-202ENST00000395066 DCTPP1Q9H773 170 aa25.6■■□□□ 1.69
CLK3-202ENST00000395066 ROBO2Q9HCK4 1378 aa25.6■■□□□ 1.69
CLK3-202ENST00000395066 C3P01024 1663 aa25.59■■□□□ 1.69
CLK3-202ENST00000395066 RAB3GAP1Q15042 981 aa25.59■■□□□ 1.69
CLK3-202ENST00000395066 GRPEL1Q9HAV7 217 aa25.59■■□□□ 1.69
CLK3-202ENST00000395066 MSH6P52701 1360 aa25.59■■□□□ 1.69
CLK3-202ENST00000395066 RGS12O14924 1447 aa25.58■■□□□ 1.69
CLK3-202ENST00000395066 AGLP35573 1532 aa25.58■■□□□ 1.69
CLK3-202ENST00000395066 FOXO3O43524 673 aa25.58■■□□□ 1.69
CLK3-202ENST00000395066 MEIS3Q99687 375 aa25.58■■□□□ 1.69
CLK3-202ENST00000395066 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.58■■□□□ 1.69
CLK3-202ENST00000395066 ESF1Q9H501 851 aaKnown RBP25.58■■□□□ 1.69
CLK3-202ENST00000395066 PPP6R1Q9UPN7 881 aa25.58■■□□□ 1.69
CLK3-202ENST00000395066 ACEP12821 1306 aa25.58■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms