RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 PRAM1Q96QH2 718 aa10.26□□□□□ -0.77
VPS36-201ENST00000378060 LAMC1P11047 1609 aa10.26□□□□□ -0.77
VPS36-201ENST00000378060 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.26□□□□□ -0.77
VPS36-201ENST00000378060 CDCA7LQ96GN5 454 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 FAM43AQ8N2R8 423 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 MINK1Q8N4C8 1332 aaPredicted RBP10.25□□□□□ -0.77
VPS36-201ENST00000378060 KCNA6P17658 529 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 FOXD4L5Q5VV16 416 aaPredicted RBP10.25□□□□□ -0.77
VPS36-201ENST00000378060 FOXD4L4Q8WXT5 416 aaPredicted RBP10.25□□□□□ -0.77
VPS36-201ENST00000378060 STRCP1A6NGW2 1772 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 MED14O60244 1454 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 ROBO2Q9HCK4 1378 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 PPP2R1AP30153 589 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 SF3A1Q15459 793 aaKnown RBP10.25□□□□□ -0.77
VPS36-201ENST00000378060 PANK1Q8TE04 598 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 AMOTL2Q9Y2J4 779 aa10.25□□□□□ -0.77
VPS36-201ENST00000378060 QRICH2Q9H0J4 1663 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 DISP3Q9P2K9 1392 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 NINLQ9Y2I6 1382 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 NUTM2FA1L443 756 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 GOLGA6L19H0YKK7 550 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 ZKSCAN1P17029 563 aaPredicted RBP10.24□□□□□ -0.77
VPS36-201ENST00000378060 ARID3AQ99856 593 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 LNPKQ9C0E8 428 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 DIAPH3Q9NSV4 1193 aa10.24□□□□□ -0.77
VPS36-201ENST00000378060 ISY1Q9ULR0 285 aaKnown RBP10.24□□□□□ -0.77
VPS36-201ENST00000378060 CSB-PGBD3P0DP91 1061 aa10.23□□□□□ -0.77
VPS36-201ENST00000378060 BECN2A8MW95 431 aa10.23□□□□□ -0.77
VPS36-201ENST00000378060 TCP11L2Q8N4U5 519 aa10.23□□□□□ -0.77
VPS36-201ENST00000378060 TESK2Q96S53 571 aa10.23□□□□□ -0.77
VPS36-201ENST00000378060 ZNF335Q9H4Z2 1342 aaPredicted RBP10.23□□□□□ -0.77
VPS36-201ENST00000378060 H3BQV1 296 aa10.23□□□□□ -0.77
VPS36-201ENST00000378060 IFFO2Q5TF58 517 aa10.23□□□□□ -0.77
VPS36-201ENST00000378060 CDC45O75419 566 aa10.22□□□□□ -0.77
VPS36-201ENST00000378060 TAF7LQ5H9L4 462 aa10.22□□□□□ -0.77
VPS36-201ENST00000378060 FAM184AQ8NB25 1140 aa10.22□□□□□ -0.77
VPS36-201ENST00000378060 CT47B1P0C2W7 299 aaPredicted RBP10.21□□□□□ -0.77
VPS36-201ENST00000378060 VSIG10Q8N0Z9 540 aa10.21□□□□□ -0.77
VPS36-201ENST00000378060 CHMP3Q9Y3E7 222 aa10.21□□□□□ -0.77
VPS36-201ENST00000378060 CHD2O14647 1828 aaKnown RBP10.21□□□□□ -0.77
VPS36-201ENST00000378060 TRAK2O60296 914 aa10.21□□□□□ -0.77
VPS36-201ENST00000378060 LRRFIP1Q32MZ4 808 aaKnown RBP10.21□□□□□ -0.77
VPS36-201ENST00000378060 HSP90AB4PQ58FF6 505 aa10.21□□□□□ -0.77
VPS36-201ENST00000378060 GOLGA6L1Q8N7Z2 621 aa10.21□□□□□ -0.78
VPS36-201ENST00000378060 TBX22Q9Y458 520 aa10.21□□□□□ -0.78
VPS36-201ENST00000378060 LRPPRCP42704 1394 aaKnown RBP10.2□□□□□ -0.78
VPS36-201ENST00000378060 TNNT3P45378 269 aaPredicted RBP10.2□□□□□ -0.78
VPS36-201ENST00000378060 MTHFSP49914 203 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 TEFQ10587 303 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 ANO2Q9NQ90 1003 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.2□□□□□ -0.78
VPS36-201ENST00000378060 RNF20Q5VTR2 975 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 MAP7D2Q96T17 732 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 FRAT2O75474 233 aaPredicted RBP10.2□□□□□ -0.78
VPS36-201ENST00000378060 MTERF4Q7Z6M4 381 aaKnown RBP10.2□□□□□ -0.78
VPS36-201ENST00000378060 CABP2Q9NPB3 220 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 PDZRN3Q9UPQ7 1066 aa10.2□□□□□ -0.78
VPS36-201ENST00000378060 XRN1Q8IZH2 1706 aaKnown RBP10.2□□□□□ -0.78
VPS36-201ENST00000378060 CPLX2Q6PUV4 134 aaKnown RBP10.19□□□□□ -0.78
VPS36-201ENST00000378060 MBD3O95983 291 aa10.19□□□□□ -0.78
VPS36-201ENST00000378060 TPM3P06753 285 aa10.19□□□□□ -0.78
VPS36-201ENST00000378060 NASPP49321 788 aaPredicted RBP10.19□□□□□ -0.78
VPS36-201ENST00000378060 MCM2P49736 904 aa10.19□□□□□ -0.78
VPS36-201ENST00000378060 DIP2AQ14689 1571 aa10.19□□□□□ -0.78
VPS36-201ENST00000378060 NEXNQ0ZGT2 675 aa10.19□□□□□ -0.78
VPS36-201ENST00000378060 LTV1Q96GA3 475 aaPredicted RBP10.19□□□□□ -0.78
VPS36-201ENST00000378060 TULP4Q9NRJ4 1543 aa10.19□□□□□ -0.78
VPS36-201ENST00000378060 MCTP1Q6DN14 999 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 WDR63Q8IWG1 891 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 GCC1Q96CN9 775 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 TULP1O00294 542 aaPredicted RBP10.18□□□□□ -0.78
VPS36-201ENST00000378060 CCDC184Q52MB2 194 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 SMC3Q9UQE7 1217 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 CPS1P31327 1500 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 KNDC1Q76NI1 1749 aa10.18□□□□□ -0.78
VPS36-201ENST00000378060 C9orf78Q9NZ63 289 aaPredicted RBP10.18□□□□□ -0.78
VPS36-201ENST00000378060 ABCC11Q96J66 1382 aa10.17□□□□□ -0.78
VPS36-201ENST00000378060 FKBP5Q13451 457 aaPredicted RBP10.17□□□□□ -0.78
VPS36-201ENST00000378060 RABEP1Q15276 862 aa10.17□□□□□ -0.78
VPS36-201ENST00000378060 FOXD4L6Q3SYB3 417 aaPredicted RBP10.17□□□□□ -0.78
VPS36-201ENST00000378060 FOXD4L3Q6VB84 417 aaPredicted RBP10.17□□□□□ -0.78
VPS36-201ENST00000378060 ZNF330Q9Y3S2 320 aaPredicted RBP10.17□□□□□ -0.78
VPS36-201ENST00000378060 NALCNQ8IZF0 1738 aa10.17□□□□□ -0.78
VPS36-201ENST00000378060 IFIT2P09913 472 aaKnown RBP10.17□□□□□ -0.78
VPS36-201ENST00000378060 C1orf141Q5JVX7 400 aa10.17□□□□□ -0.78
VPS36-201ENST00000378060 ERC2O15083 957 aa10.17□□□□□ -0.78
VPS36-201ENST00000378060 CCDC39Q9UFE4 941 aa10.17□□□□□ -0.78
VPS36-201ENST00000378060 FAM13BQ9NYF5 915 aa10.16□□□□□ -0.78
VPS36-201ENST00000378060 GGNBP2Q9H3C7 697 aa10.16□□□□□ -0.78
VPS36-201ENST00000378060 DDX58O95786 925 aaKnown RBP10.16□□□□□ -0.78
VPS36-201ENST00000378060 RGPD8O14715 1765 aaPredicted RBP10.15□□□□□ -0.78
VPS36-201ENST00000378060 CIZ1Q9ULV3 898 aaPredicted RBP10.15□□□□□ -0.78
VPS36-201ENST00000378060 GNAI3P08754 354 aa10.15□□□□□ -0.78
VPS36-201ENST00000378060 GPS2Q13227 327 aa10.15□□□□□ -0.78
VPS36-201ENST00000378060 PROSER2Q86WR7 435 aaPredicted RBP10.15□□□□□ -0.78
VPS36-201ENST00000378060 TPM2P07951 284 aa10.15□□□□□ -0.78
VPS36-201ENST00000378060 TPM1P09493 284 aa10.15□□□□□ -0.78
VPS36-201ENST00000378060 EXOSC9Q06265 439 aaKnown RBP10.15□□□□□ -0.78
VPS36-201ENST00000378060 BRPF3Q9ULD4 1205 aa10.15□□□□□ -0.78
VPS36-201ENST00000378060 TECPR2O15040 1411 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms