RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 Ercc6l2Q9JIM3 1537 aa23.54■■□□□ 1.36
Shkbp1-201ENSMUST00000003857 Ecm2Q5FW85 670 aa23.52■■□□□ 1.36
Shkbp1-201ENSMUST00000003857 Cetn4Q8K4K1 168 aa23.51■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Chmp4bQ9D8B3 224 aaKnown RBP23.51■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 LifrP42703 1092 aa23.5■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Asxl2Q8BZ32 1370 aa23.5■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 PtpruB1AUH1 1446 aa23.5■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Rsph6aQ8CDR2 708 aa23.49■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Chd4Q6PDQ2 1915 aaKnown RBP23.49■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Gm10093D3YYI8 482 aa23.49■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Hdac1O09106 482 aaKnown RBP23.49■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Aplp1Q03157 653 aa23.48■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Kif20bQ80WE4 1774 aaKnown RBP23.48■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Cavin2Q63918 418 aaKnown RBP23.48■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Idi2Q8BFZ6 227 aa23.48■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Wdr63B2RY71 923 aa23.47■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Gemin5Q8BX17 1502 aaKnown RBP23.47■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Sos1Q62245 1319 aa23.46■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Ncapd2Q8K2Z4 1392 aa23.46■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Cps1Q8C196 1500 aa23.46■■□□□ 1.35
Shkbp1-201ENSMUST00000003857 Cabp2Q9JLK4 216 aa23.45■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 NpatQ8BMA5 1420 aa23.45■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Mcm10Q0VBD2 885 aa23.44■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Znf316Q6PGE4 1016 aa23.44■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Tnrc6bQ8BKI2 1810 aaKnown RBP23.44■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Usp16Q99LG0 825 aa23.44■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 MarsQ68FL6 902 aaKnown RBP23.43■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 4933402E13RikQ9D4D2 429 aa23.43■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Hoxb7P09024 217 aa23.43■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Trim27Q62158 513 aa23.43■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 CarsQ9ER72 831 aaKnown RBP23.42■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Ssh1Q76I79 1042 aa23.41■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Mdc1Q5PSV9 1707 aa23.41■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Pik3c2bE9QAN8 1632 aa23.41■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Tbc1d9Q3UYK3 1264 aa23.41■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Mcm4P49717 862 aa23.4■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Ipo4Q8VI75 1082 aa23.4■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Senp3Q9EP97 568 aaKnown RBP23.4■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Spryd3E9Q9B3 442 aa23.4■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Nsfl1cQ9CZ44 370 aaKnown RBP23.4■■□□□ 1.34
Shkbp1-201ENSMUST00000003857 Med1Q925J9 1575 aa23.38■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 CatipB9EKE5 520 aa23.37■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 U2surpQ6NV83 1029 aaKnown RBP23.37■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Ppp1r18Q8BQ30 594 aa23.37■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Kif24Q6NWW5 1356 aa23.37■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Ddit3P35639 168 aa23.36■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Cgnl1Q6AW69 1298 aa23.36■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Ric3Q8BPM6 367 aa23.36■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Klhdc4Q921I2 584 aa23.36■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Nek4Q9Z1J2 792 aa23.36■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Dip2bQ3UH60 1574 aa23.35■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Psme1P97371 249 aa23.35■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Aldh8a1Q8BH00 487 aa23.35■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Aldh1l2Q8K009 923 aa23.35■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Tfip11Q9ERA6 838 aaKnown RBP23.35■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Rfx1P48377 963 aa23.34■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Adgrb1Q3UHD1 1582 aa23.33■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Eif4a2P10630 407 aa23.33■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 Kdm4cQ8VCD7 1054 aa23.33■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 HnrnpuQ8VEK3 800 aaKnown RBP23.33■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 4930407I10RikD3Z5T8 1512 aa23.33■■□□□ 1.33
Shkbp1-201ENSMUST00000003857 NalcnQ8BXR5 1738 aa23.33■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Rsph3aQ3UFY4 516 aa23.33■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Dnttip2Q8R2M2 758 aaKnown RBP23.33■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Stk31Q99MW1 1018 aa23.33■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Tet3Q8BG87 1668 aa23.32■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Eif4g2Q62448 906 aaKnown RBP23.32■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 N4bp2F8VQG7 1678 aaKnown RBP23.31■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 IghaA0A0A6YXW6 389 aa23.31■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Txndc2Q6P902 515 aa23.31■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 GorabQ8BRM2 368 aa23.3■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Chd2E9PZM4 1827 aaKnown RBP23.3■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Slit3Q9WVB4 1523 aa23.3■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Rab11fip3Q8CHD8 1047 aa23.3■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 CenppQ9CZ92 286 aa23.3■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Astn2Q80Z10 1352 aa23.3■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Amer1Q7TS75 1132 aa23.29■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Plin1Q8CGN5 517 aa23.29■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Gcc1Q9D4H2 778 aa23.29■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Tm6sf1P58749 370 aa23.29■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Plcb2A3KGF7 1181 aa23.28■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Anapc15-psA0A140T8L6 141 aa23.28■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Chl1P70232 1209 aa23.28■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 MpripP97434 1024 aa23.28■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Phf14Q9D4H9 881 aa23.28■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Ccdc146E9Q9F7 977 aa23.27■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 AU015836B2RUM3 263 aa23.27■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 Aifm3Q3TY86 605 aa23.27■■□□□ 1.32
Shkbp1-201ENSMUST00000003857 FanclQ9CR14 375 aa23.26■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Triml2E9PW10 424 aa23.26■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Mcm2P97310 904 aa23.26■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Fam13aQ8BGI4 693 aa23.25■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Phf23Q8BSN5 401 aa23.25■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 1700010I14RikQ7TPG0 532 aa23.25■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Cdk12Q14AX6 1484 aaKnown RBP23.24■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 EngaseQ8BX80 734 aa23.23■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Sirt1Q923E4 737 aa23.23■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Kif20aP97329 887 aa23.23■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Slit2Q9R1B9 1521 aa23.23■■□□□ 1.31
Shkbp1-201ENSMUST00000003857 Ubr1O70481 1757 aa23.23■■□□□ 1.31
Retrieved 100 of 22,080 RNA–protein pairs in 12.8 ms