RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Terf2O35144 541 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 Rfx1P48377 963 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 Ssh1Q76I79 1042 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 Plin1Q8CGN5 517 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 Cdc37l1Q9CZP7 335 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 Atp7bQ64446 1462 aa20.65■□□□□ 0.9
Shh-201ENSMUST00000002708 Znf692Q3U381 531 aa20.64■□□□□ 0.9
Shh-201ENSMUST00000002708 Il4rP16382 810 aa20.62■□□□□ 0.89
Shh-201ENSMUST00000002708 Idi2Q8BFZ6 227 aa20.62■□□□□ 0.89
Shh-201ENSMUST00000002708 Plekhm2Q80TQ5 1018 aa20.62■□□□□ 0.89
Shh-201ENSMUST00000002708 Cabp2Q9JLK4 216 aa20.62■□□□□ 0.89
Shh-201ENSMUST00000002708 Kif1aP33173 1695 aa20.62■□□□□ 0.89
Shh-201ENSMUST00000002708 Mcm4P49717 862 aa20.61■□□□□ 0.89
Shh-201ENSMUST00000002708 Nsd3Q6P2L6 1439 aa20.6■□□□□ 0.89
Shh-201ENSMUST00000002708 Plcb2A3KGF7 1181 aa20.6■□□□□ 0.89
Shh-201ENSMUST00000002708 Dmrtc1Q9D9R7 182 aa20.6■□□□□ 0.89
Shh-201ENSMUST00000002708 Spef2Q8C9J3 1734 aa20.59■□□□□ 0.89
Shh-201ENSMUST00000002708 AU015836B2RUM3 263 aa20.59■□□□□ 0.89
Shh-201ENSMUST00000002708 Vamp4O70480 141 aa20.59■□□□□ 0.89
Shh-201ENSMUST00000002708 Q3UPC7 1272 aa20.59■□□□□ 0.89
Shh-201ENSMUST00000002708 Rsph6aQ8CDR2 708 aa20.59■□□□□ 0.89
Shh-201ENSMUST00000002708 HnrnpmQ9D0E1 729 aaKnown RBP20.58■□□□□ 0.89
Shh-201ENSMUST00000002708 Tnrc6bQ8BKI2 1810 aaKnown RBP20.58■□□□□ 0.89
Shh-201ENSMUST00000002708 GorabQ8BRM2 368 aa20.58■□□□□ 0.88
Shh-201ENSMUST00000002708 SkilQ60665 675 aa20.57■□□□□ 0.88
Shh-201ENSMUST00000002708 Pik3c2bE9QAN8 1632 aa20.57■□□□□ 0.88
Shh-201ENSMUST00000002708 U2surpQ6NV83 1029 aaKnown RBP20.57■□□□□ 0.88
Shh-201ENSMUST00000002708 Dnajc5gQ8C632 165 aa20.57■□□□□ 0.88
Shh-201ENSMUST00000002708 PtpruB1AUH1 1446 aa20.57■□□□□ 0.88
Shh-201ENSMUST00000002708 Map7O88735 730 aa20.56■□□□□ 0.88
Shh-201ENSMUST00000002708 Plppr3Q7TPB0 716 aa20.56■□□□□ 0.88
Shh-201ENSMUST00000002708 Gnai1B2RSH2 354 aa20.56■□□□□ 0.88
Shh-201ENSMUST00000002708 Ddit3P35639 168 aa20.56■□□□□ 0.88
Shh-201ENSMUST00000002708 Gnai3Q9DC51 354 aa20.56■□□□□ 0.88
Shh-201ENSMUST00000002708 Tfip11Q9ERA6 838 aaKnown RBP20.56■□□□□ 0.88
Shh-201ENSMUST00000002708 Aldh1l1Q8R0Y6 902 aa20.55■□□□□ 0.88
Shh-201ENSMUST00000002708 Hs1bp3Q3TC93 395 aa20.55■□□□□ 0.88
Shh-201ENSMUST00000002708 Usp16Q99LG0 825 aa20.55■□□□□ 0.88
Shh-201ENSMUST00000002708 Gemin5Q8BX17 1502 aaKnown RBP20.55■□□□□ 0.88
Shh-201ENSMUST00000002708 Brd1E9PZ26 1189 aaKnown RBP20.54■□□□□ 0.88
Shh-201ENSMUST00000002708 Klhdc4Q921I2 584 aa20.54■□□□□ 0.88
Shh-201ENSMUST00000002708 NgefQ8CHT1 710 aa20.54■□□□□ 0.88
Shh-201ENSMUST00000002708 CatipB9EKE5 520 aa20.53■□□□□ 0.88
Shh-201ENSMUST00000002708 Pdcl3Q8BVF2 240 aa20.53■□□□□ 0.88
Shh-201ENSMUST00000002708 Dip2bQ3UH60 1574 aa20.53■□□□□ 0.88
Shh-201ENSMUST00000002708 Vsig10D3YX43 558 aa20.52■□□□□ 0.88
Shh-201ENSMUST00000002708 MpripP97434 1024 aa20.52■□□□□ 0.88
Shh-201ENSMUST00000002708 MvpQ9EQK5 861 aa20.52■□□□□ 0.88
Shh-201ENSMUST00000002708 Chd2E9PZM4 1827 aaKnown RBP20.52■□□□□ 0.88
Shh-201ENSMUST00000002708 Cps1Q8C196 1500 aa20.52■□□□□ 0.87
Shh-201ENSMUST00000002708 Stk11ipQ3TAA7 1072 aa20.51■□□□□ 0.87
Shh-201ENSMUST00000002708 Eif4a2P10630 407 aa20.49■□□□□ 0.87
Shh-201ENSMUST00000002708 DekQ7TNV0 380 aaKnown RBP20.49■□□□□ 0.87
Shh-201ENSMUST00000002708 Paxip1Q6NZQ4 1056 aa20.48■□□□□ 0.87
Shh-201ENSMUST00000002708 Ankrd44B2RXR6 993 aa20.47■□□□□ 0.87
Shh-201ENSMUST00000002708 Stk31Q99MW1 1018 aa20.47■□□□□ 0.87
Shh-201ENSMUST00000002708 Nek4Q9Z1J2 792 aa20.47■□□□□ 0.87
Shh-201ENSMUST00000002708 SlkO54988 1233 aa20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 Tbc1d9Q3UYK3 1264 aa20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 KnstrnQ9D9Z1 312 aaKnown RBP20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 1700019A02RikA0A087WPV9 146 aa20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 Hoxb7P09024 217 aa20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 Phf14Q9D4H9 881 aa20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 Kif20bQ80WE4 1774 aaKnown RBP20.46■□□□□ 0.87
Shh-201ENSMUST00000002708 Slit3Q9WVB4 1523 aa20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 Wdr63B2RY71 923 aa20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 Gm10093D3YYI8 482 aa20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 Hdac1O09106 482 aaKnown RBP20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 Q3UJC8 639 aa20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 Safb2Q80YR5 991 aaKnown RBP20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 Pknox2Q8BG99 474 aa20.45■□□□□ 0.86
Shh-201ENSMUST00000002708 PzpQ61838 1495 aa20.43■□□□□ 0.86
Shh-201ENSMUST00000002708 Parp14Q2EMV9 1817 aa20.43■□□□□ 0.86
Shh-201ENSMUST00000002708 N4bp2F8VQG7 1678 aaKnown RBP20.43■□□□□ 0.86
Shh-201ENSMUST00000002708 Ccdc146E9Q9F7 977 aa20.43■□□□□ 0.86
Shh-201ENSMUST00000002708 Ric3Q8BPM6 367 aa20.43■□□□□ 0.86
Shh-201ENSMUST00000002708 Sox12Q04890 314 aa20.42■□□□□ 0.86
Shh-201ENSMUST00000002708 Pibf1E9Q6K3 756 aa20.42■□□□□ 0.86
Shh-201ENSMUST00000002708 Gtf2a1Q99PM3 378 aa20.42■□□□□ 0.86
Shh-201ENSMUST00000002708 Rreb1Q3UH06 1700 aaKnown RBP20.41■□□□□ 0.86
Shh-201ENSMUST00000002708 Adamtsl3G3UXC7 1706 aa20.41■□□□□ 0.86
Shh-201ENSMUST00000002708 Sos1Q62245 1319 aa20.4■□□□□ 0.86
Shh-201ENSMUST00000002708 CarsQ9ER72 831 aaKnown RBP20.4■□□□□ 0.86
Shh-201ENSMUST00000002708 Astn2Q80Z10 1352 aa20.4■□□□□ 0.86
Shh-201ENSMUST00000002708 Aifm3Q3TY86 605 aa20.4■□□□□ 0.86
Shh-201ENSMUST00000002708 Wwc1Q5SXA9 1104 aa20.39■□□□□ 0.85
Shh-201ENSMUST00000002708 MarsQ68FL6 902 aaKnown RBP20.39■□□□□ 0.85
Shh-201ENSMUST00000002708 Chmp4bQ9D8B3 224 aaKnown RBP20.39■□□□□ 0.85
Shh-201ENSMUST00000002708 Rsph3aQ3UFY4 516 aa20.38■□□□□ 0.85
Shh-201ENSMUST00000002708 Trim27Q62158 513 aa20.38■□□□□ 0.85
Shh-201ENSMUST00000002708 Cavin2Q63918 418 aaKnown RBP20.37■□□□□ 0.85
Shh-201ENSMUST00000002708 Map2P20357 1828 aa20.37■□□□□ 0.85
Shh-201ENSMUST00000002708 LifrP42703 1092 aa20.37■□□□□ 0.85
Shh-201ENSMUST00000002708 Kif24Q6NWW5 1356 aa20.36■□□□□ 0.85
Shh-201ENSMUST00000002708 Ggnbp2Q5SV77 696 aa20.36■□□□□ 0.85
Shh-201ENSMUST00000002708 TmpoQ61033 693 aaKnown RBP20.36■□□□□ 0.85
Shh-201ENSMUST00000002708 4933402E13RikQ9D4D2 429 aa20.36■□□□□ 0.85
Shh-201ENSMUST00000002708 Med1Q925J9 1575 aa20.36■□□□□ 0.85
Shh-201ENSMUST00000002708 Sirt1Q923E4 737 aa20.35■□□□□ 0.85
Shh-201ENSMUST00000002708 Cetn4Q8K4K1 168 aa20.35■□□□□ 0.85
Retrieved 100 of 22,080 RNA–protein pairs in 11.9 ms