RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	TOM70	P07213	617 aa	Known RBP	4.62	□□□□□ -1.67
SEN1	YLR430W	HXT13	P39924	564 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	YIR042C	P40586	236 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	HOT1	Q03213	719 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	ATG26	Q06321	1198 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	PDB1	P32473	366 aa	Known RBP	4.62	□□□□□ -1.67
SEN1	YLR430W	UBP14	P38237	781 aa	Known RBP	4.62	□□□□□ -1.67
SEN1	YLR430W	NUP60	P39705	539 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	OSW7	P43611	510 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	RTF1	P53064	558 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	SHE10	P53075	577 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	FAR8	Q05040	523 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	YDR341C	Q05506	607 aa	Known RBP	4.62	□□□□□ -1.67
SEN1	YLR430W	NKP2	Q06162	153 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	BNI4	P53858	892 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	PDR18	P53756	1333 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	SSL2	Q00578	843 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	YKU80	Q04437	629 aa		4.62	□□□□□ -1.67
SEN1	YLR430W	POB3	Q04636	552 aa	Known RBP	4.62	□□□□□ -1.67
SEN1	YLR430W	TYR1	P20049	452 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
SEN1	YLR430W	MMR1	Q06324	491 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	UTP4	Q06679	776 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	PDR11	P40550	1411 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	UBC1	P21734	215 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	NPL6	P32832	435 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	SQT1	P35184	431 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	PPX1	P38698	397 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	YLR257W	Q06146	321 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	ATG23	Q06671	453 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	YEF3	P16521	1044 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	PTH2	P34222	208 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	PRX1	P34227	261 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	CUS1	Q02554	436 aa	Predicted RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	VID27	P40157	782 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	ORM1	P53224	222 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	HEF3	P53978	1044 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	TRS33	Q99394	268 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	RPL19A	P0CX82	189 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	RPL19B	P0CX83	189 aa	Predicted RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	REI1	P38344	393 aa	Predicted RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	RRM3	P38766	723 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	ALD4	P46367	519 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	FMP30	Q02883	468 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	MGR3	Q04472	501 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	FUS2	Q05670	677 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	RPC19	P28000	142 aa	Known RBP	4.61	□□□□□ -1.67
SEN1	YLR430W	NUP120	P35729	1037 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	OSH2	Q12451	1283 aa		4.61	□□□□□ -1.67
SEN1	YLR430W	DNF2	Q12675	1612 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	GPD2	P41911	440 aa	Known RBP	4.6	□□□□□ -1.67
SEN1	YLR430W	TRS85	P46944	698 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	YGL242C	P53066	181 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	LSC1	P53598	329 aa	Known RBP	4.6	□□□□□ -1.67
SEN1	YLR430W	SPC24	Q04477	213 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SEN1	YLR430W	KDX1	P36005	433 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	MET10	P39692	1035 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	SPC72	P39723	622 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	FKH1	P40466	484 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	MAD1	P40957	749 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	CLF1	Q12309	687 aa	Predicted RBP	4.6	□□□□□ -1.67
SEN1	YLR430W	VAS1	P07806	1104 aa	Known RBP	4.6	□□□□□ -1.67
SEN1	YLR430W	MSN5	P52918	1224 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	ESF2	P53743	316 aa	Known RBP	4.6	□□□□□ -1.67
SEN1	YLR430W	PKH1	Q03407	766 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	DPL1	Q05567	589 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	CIR2	Q08822	631 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	SGT2	Q12118	346 aa	Known RBP	4.6	□□□□□ -1.67
SEN1	YLR430W	YJR079W	P47126	109 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	ATG2	P53855	1592 aa		4.6	□□□□□ -1.67
SEN1	YLR430W	FES1	P38260	290 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	YPR089W	O13585	888 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	ADE3	P07245	946 aa	Known RBP	4.59	□□□□□ -1.67
SEN1	YLR430W	ECM32	P32644	1121 aa	Known RBP	4.59	□□□□□ -1.67
SEN1	YLR430W	OSH3	P38713	996 aa	Known RBP	4.59	□□□□□ -1.67
SEN1	YLR430W	KAP123	P40069	1113 aa	Known RBP	4.59	□□□□□ -1.67
SEN1	YLR430W	CIK1	Q01649	594 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	SYG1	P40528	902 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	ATG17	Q06410	417 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	DNL4	Q08387	944 aa	Predicted RBP	4.59	□□□□□ -1.67
SEN1	YLR430W	MET7	Q08645	548 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	MCM16	Q12262	181 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	ARG1	P22768	420 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	AIM21	P40563	679 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	PLP1	Q04004	230 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	THI22	Q06490	572 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	PSR1	Q07800	427 aa		4.59	□□□□□ -1.67
SEN1	YLR430W	HAP1	P0CE41	1502 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	PET122	P10355	254 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	KCC4	P25389	1037 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	YJU2	P28320	278 aa	Predicted RBP	4.59	□□□□□ -1.68
SEN1	YLR430W	VPS35	P34110	944 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	MRP8	P35719	219 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	CSE4	P36012	229 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	GGA2	P38817	585 aa	Known RBP	4.59	□□□□□ -1.68
SEN1	YLR430W	BUD16	P39988	312 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	RAT1	Q02792	1006 aa	Known RBP	4.59	□□□□□ -1.68
SEN1	YLR430W	BUD7	Q08754	746 aa		4.59	□□□□□ -1.68
SEN1	YLR430W	REP1	P03871	373 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 11.1 ms