RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	VPS75	P53853	264 aa		4.1	□□□□□ -1.75
SSM4	YIL030C	RGA2	Q06407	1009 aa		4.1	□□□□□ -1.75
SSM4	YIL030C	PSH1	Q12161	406 aa		4.1	□□□□□ -1.75
SSM4	YIL030C	DPS1	P04802	557 aa	Known RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	EST1	P17214	699 aa	Predicted RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	SHM1	P37292	490 aa	Predicted RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	TFG2	P41896	400 aa	Predicted RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	MCX1	P38323	520 aa	Predicted RBP	4.1	□□□□□ -1.75
SSM4	YIL030C	CTF18	P49956	741 aa		4.1	□□□□□ -1.75
SSM4	YIL030C	YMR102C	Q03177	834 aa		4.1	□□□□□ -1.75
SSM4	YIL030C	RAD4	P14736	754 aa		4.09	□□□□□ -1.75
SSM4	YIL030C	CDC10	P25342	322 aa	Known RBP	4.09	□□□□□ -1.75
SSM4	YIL030C	HSP104	P31539	908 aa	Known RBP	4.09	□□□□□ -1.75
SSM4	YIL030C	SDS3	P40505	327 aa		4.09	□□□□□ -1.75
SSM4	YIL030C	YGR122W	P53272	402 aa		4.09	□□□□□ -1.75
SSM4	YIL030C	CUS1	Q02554	436 aa	Predicted RBP	4.09	□□□□□ -1.75
SSM4	YIL030C	FYV10	P40492	516 aa		4.09	□□□□□ -1.75
SSM4	YIL030C	PPM2	Q08282	695 aa		4.09	□□□□□ -1.75
SSM4	YIL030C	ALG1	P16661	449 aa		4.09	□□□□□ -1.76
SSM4	YIL030C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.76	not detected
SSM4	YIL030C	ERG5	P54781	538 aa		4.09	□□□□□ -1.76
SSM4	YIL030C	SLT2	Q00772	484 aa		4.09	□□□□□ -1.76
SSM4	YIL030C	TIM50	Q02776	476 aa		4.09	□□□□□ -1.76
SSM4	YIL030C	STE23	Q06010	1027 aa		4.09	□□□□□ -1.76
SSM4	YIL030C	FOB1	O13329	566 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	BCK2	P33306	851 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	AVT3	P36062	692 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	NMD2	P38798	1089 aa	Known RBP	4.08	□□□□□ -1.76
SSM4	YIL030C	CTH1	P47976	325 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	MLH2	Q07980	695 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	PEP5	P12868	1029 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	UBC1	P21734	215 aa	Known RBP	4.08	□□□□□ -1.76
SSM4	YIL030C	FIG4	P42837	879 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	HXT10	P43581	546 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	PUS2	P53167	370 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	ORM2	Q06144	216 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	SIL1	Q08199	421 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	YOR296W	Q08748	1289 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	APL4	Q12028	832 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	RPO26	P20435	155 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	RFC1	P38630	861 aa	Known RBP	4.08	□□□□□ -1.76
SSM4	YIL030C	YOR223W	Q12015	292 aa		4.08	□□□□□ -1.76
SSM4	YIL030C	CYB2	P00175	591 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	DAL7	P21826	554 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	SPT21	P35209	758 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	BTN2	P53286	410 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	INP2	Q03824	705 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	TCO89	Q08921	799 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	TAH18	Q12181	623 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	OSM1	P21375	501 aa	Known RBP	4.07	□□□□□ -1.76
SSM4	YIL030C	VPS41	P38959	992 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	YER130C	P39959	443 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	BDP1	P46678	594 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	YJR079W	P47126	109 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	MYO5	Q04439	1219 aa	Known RBP	4.07	□□□□□ -1.76
SSM4	YIL030C	RAD3	P06839	778 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	PRI1	P10363	409 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	PEP3	P27801	918 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	FTH1	P38310	465 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	RTT107	P38850	1070 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	YJR039W	P47107	1121 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	YGL138C	P53122	345 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	ADE16	P54113	591 aa	Known RBP	4.07	□□□□□ -1.76
SSM4	YIL030C	YLR177W	Q06251	628 aa		4.07	□□□□□ -1.76
SSM4	YIL030C	MIC60	P36112	540 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	MDJ2	P42834	146 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	CAF130	P53280	1122 aa	Predicted RBP	4.06	□□□□□ -1.76
SSM4	YIL030C	FUS2	Q05670	677 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	TPM1	P17536	199 aa	Known RBP	4.06	□□□□□ -1.76
SSM4	YIL030C	GYL1	Q04322	720 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	SFH1	Q06168	426 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
SSM4	YIL030C	CKI1	P20485	582 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	YGR153W	P48238	217 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	RNT1	Q02555	471 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	TMA64	Q04600	565 aa	Known RBP	4.06	□□□□□ -1.76
SSM4	YIL030C	TMA16	Q08687	178 aa		4.06	□□□□□ -1.76
SSM4	YIL030C	PMR1	P13586	950 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	BMH2	P34730	273 aa	Known RBP	4.05	□□□□□ -1.76
SSM4	YIL030C	RCK2	P38623	610 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	RAD26	P40352	1085 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
SSM4	YIL030C	RPN7	Q06103	429 aa	Known RBP	4.05	□□□□□ -1.76
SSM4	YIL030C	DAS2	Q12084	232 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	VAS1	P07806	1104 aa	Known RBP	4.05	□□□□□ -1.76
SSM4	YIL030C	TUP1	P16649	713 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	UBP5	P39944	805 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	YGL140C	P53120	1219 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	GAS4	Q08271	471 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	SEC18	P18759	758 aa	Known RBP	4.05	□□□□□ -1.76
SSM4	YIL030C	MSB3	P48566	633 aa	Predicted RBP	4.05	□□□□□ -1.76
SSM4	YIL030C	MDG1	P53885	366 aa		4.05	□□□□□ -1.76
SSM4	YIL030C	CNS1	P33313	385 aa		4.04	□□□□□ -1.76
SSM4	YIL030C	SSP2	Q08646	371 aa		4.04	□□□□□ -1.76
SSM4	YIL030C	YCR051W	P25631	222 aa		4.04	□□□□□ -1.76
SSM4	YIL030C	RGD1	P38339	666 aa		4.04	□□□□□ -1.76
SSM4	YIL030C	SPL2	P38839	148 aa		4.04	□□□□□ -1.76
SSM4	YIL030C	RIO2	P40160	425 aa	Known RBP	4.04	□□□□□ -1.76
SSM4	YIL030C	AXL1	P40851	1208 aa		4.04	□□□□□ -1.76
SSM4	YIL030C	LYS14	P40971	790 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 35.2 ms