RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	FRA1	Q07825	749 aa		7.31	□□□□□ -1.24
RPT3	YDR394W	YOL057W	Q08225	711 aa		7.31	□□□□□ -1.24
RPT3	YDR394W	NUP145	P49687	1317 aa		7.3	□□□□□ -1.24
RPT3	YDR394W	YBR287W	P38355	427 aa		7.3	□□□□□ -1.24
RPT3	YDR394W	RRP5	Q05022	1729 aa	Known RBP	7.3	□□□□□ -1.24
RPT3	YDR394W	YDJ1	P25491	409 aa	Known RBP	7.29	□□□□□ -1.24
RPT3	YDR394W	HGH1	P48362	394 aa	Known RBP	7.29	□□□□□ -1.24
RPT3	YDR394W	MEC3	Q02574	474 aa		7.29	□□□□□ -1.24
RPT3	YDR394W	INP54	Q08227	384 aa	Known RBP	7.29	□□□□□ -1.24
RPT3	YDR394W	MCM16	Q12262	181 aa		7.29	□□□□□ -1.24
RPT3	YDR394W	SRF1	Q12516	437 aa		7.29	□□□□□ -1.24
RPT3	YDR394W	MKS1	P34072	584 aa		7.28	□□□□□ -1.24
RPT3	YDR394W	SPO1	P53541	631 aa		7.28	□□□□□ -1.24
RPT3	YDR394W	EAF7	P53911	425 aa	Known RBP	7.28	□□□□□ -1.24
RPT3	YDR394W	NOP8	Q08287	484 aa	Predicted RBP	7.28	□□□□□ -1.24
RPT3	YDR394W	GCD7	P32502	381 aa	Predicted RBP	7.27	□□□□□ -1.25
RPT3	YDR394W	AAD14	P42884	376 aa		7.27	□□□□□ -1.25
RPT3	YDR394W	STE20	Q03497	939 aa	Known RBP	7.27	□□□□□ -1.25
RPT3	YDR394W	RAD50	P12753	1312 aa		7.27	□□□□□ -1.25
RPT3	YDR394W	YIL177C	P40434	1758 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	YJL225C	P40889	1758 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	MRP7	P12687	371 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	RAD4	P14736	754 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	ISF1	P32488	338 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	NMD2	P38798	1089 aa	Known RBP	7.26	□□□□□ -1.25
RPT3	YDR394W	RGA1	P39083	1007 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	NUP85	P46673	744 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	DFG5	Q05031	458 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	YDR306C	Q06640	478 aa		7.26	□□□□□ -1.25
RPT3	YDR394W	FKS3	Q04952	1785 aa		7.25	□□□□□ -1.25
RPT3	YDR394W	PCT1	P13259	424 aa		7.25	□□□□□ -1.25
RPT3	YDR394W	EMP47	P43555	445 aa		7.25	□□□□□ -1.25
RPT3	YDR394W	DNM1	P54861	757 aa		7.25	□□□□□ -1.25
RPT3	YDR394W	NKP2	Q06162	153 aa		7.25	□□□□□ -1.25
RPT3	YDR394W	OPT2	Q06593	877 aa		7.25	□□□□□ -1.25
RPT3	YDR394W	URB1	P34241	1764 aa	Known RBP	7.24	□□□□□ -1.25
RPT3	YDR394W	ARG82	P07250	355 aa		7.24	□□□□□ -1.25
RPT3	YDR394W	FBP26	P32604	452 aa		7.24	□□□□□ -1.25
RPT3	YDR394W	RAD24	P32641	659 aa		7.24	□□□□□ -1.25
RPT3	YDR394W	BOI2	P39969	1040 aa		7.24	□□□□□ -1.25
RPT3	YDR394W	YPL062W	Q02781	134 aa		7.24	□□□□□ -1.25
RPT3	YDR394W	ENT1	Q12518	454 aa		7.24	□□□□□ -1.25
RPT3	YDR394W	CDC16	P09798	840 aa		7.23	□□□□□ -1.25
RPT3	YDR394W	OSM1	P21375	501 aa	Known RBP	7.23	□□□□□ -1.25
RPT3	YDR394W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	7.23	□□□□□ -1.25	not detected
RPT3	YDR394W	RFC1	P38630	861 aa	Known RBP	7.23	□□□□□ -1.25
RPT3	YDR394W	APL6	P46682	809 aa		7.23	□□□□□ -1.25
RPT3	YDR394W	YJR008W	P47085	338 aa		7.23	□□□□□ -1.25
RPT3	YDR394W	ADE16	P54113	591 aa	Known RBP	7.23	□□□□□ -1.25
RPT3	YDR394W	ALE1	Q08548	619 aa		7.23	□□□□□ -1.25
RPT3	YDR394W	ROM2	P51862	1356 aa	Known RBP	7.22	□□□□□ -1.25
RPT3	YDR394W	SUP45	P12385	437 aa	Known RBP	7.22	□□□□□ -1.25
RPT3	YDR394W	CLC1	P17891	233 aa		7.22	□□□□□ -1.25
RPT3	YDR394W	VPS24	P36095	224 aa	Known RBP	7.22	□□□□□ -1.25
RPT3	YDR394W	SNF7	P39929	240 aa	Known RBP	7.22	□□□□□ -1.25
RPT3	YDR394W	YNL108C	P53929	270 aa		7.22	□□□□□ -1.25
RPT3	YDR394W	RMT2	Q03305	412 aa		7.22	□□□□□ -1.25
RPT3	YDR394W	ATG20	Q07528	640 aa		7.22	□□□□□ -1.25
RPT3	YDR394W	YDL176W	Q12027	708 aa		7.22	□□□□□ -1.25
RPT3	YDR394W	LSP1	Q12230	341 aa	Known RBP	7.22	□□□□□ -1.25
RPT3	YDR394W	STE6	P12866	1290 aa		7.21	□□□□□ -1.26
RPT3	YDR394W	YKL133C	P36066	463 aa		7.21	□□□□□ -1.26
RPT3	YDR394W	YJL007C	P47080	104 aa		7.21	□□□□□ -1.26
RPT3	YDR394W	ATG13	Q06628	738 aa		7.21	□□□□□ -1.26
RPT3	YDR394W	ENO2	P00925	437 aa	Known RBP	7.2	□□□□□ -1.26
RPT3	YDR394W	DLD1	P32891	587 aa		7.2	□□□□□ -1.26
RPT3	YDR394W	YBP2	P53169	641 aa		7.2	□□□□□ -1.26
RPT3	YDR394W	YGR122W	P53272	402 aa		7.2	□□□□□ -1.26
RPT3	YDR394W	BDS1	Q08347	646 aa		7.2	□□□□□ -1.26
RPT3	YDR394W	SWC3	P31376	625 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	NUP133	P36161	1157 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	GLY1	P37303	387 aa	Known RBP	7.19	□□□□□ -1.26
RPT3	YDR394W	SSF1	P38789	453 aa	Predicted RBP	7.19	□□□□□ -1.26
RPT3	YDR394W	YJR098C	P47139	656 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	ISU1	Q03020	165 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	YLR346C	Q06139	101 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	SSP2	Q08646	371 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	SWI1	P09547	1314 aa		7.19	□□□□□ -1.26
RPT3	YDR394W	ROX1	P25042	368 aa		7.18	□□□□□ -1.26
RPT3	YDR394W	LSC2	P53312	427 aa		7.18	□□□□□ -1.26
RPT3	YDR394W	MDG1	P53885	366 aa		7.18	□□□□□ -1.26
RPT3	YDR394W	ZDS2	P54786	942 aa		7.18	□□□□□ -1.26
RPT3	YDR394W	NCB2	Q92317	146 aa		7.18	□□□□□ -1.26
RPT3	YDR394W	BRN1	P38170	754 aa		7.17	□□□□□ -1.26
RPT3	YDR394W	BIM1	P40013	344 aa		7.17	□□□□□ -1.26
RPT3	YDR394W	RIM21	P48565	533 aa		7.17	□□□□□ -1.26
RPT3	YDR394W	ISR1	Q06098	443 aa	Known RBP	7.17	□□□□□ -1.26
RPT3	YDR394W	VAS1	P07806	1104 aa	Known RBP	7.16	□□□□□ -1.26
RPT3	YDR394W	SRS2	P12954	1174 aa		7.16	□□□□□ -1.26
RPT3	YDR394W	MIP1	P15801	1254 aa		7.16	□□□□□ -1.26
RPT3	YDR394W	UBP12	P39538	1254 aa		7.16	□□□□□ -1.26
RPT3	YDR394W	ATG32	P40458	529 aa		7.16	□□□□□ -1.26
RPT3	YDR394W	ITC1	P53125	1264 aa		7.16	□□□□□ -1.26
RPT3	YDR394W	IMH1	Q06704	911 aa	Known RBP	7.16	□□□□□ -1.26
RPT3	YDR394W	RLF2	Q12495	606 aa		7.16	□□□□□ -1.26
RPT3	YDR394W	GRX1	P25373	110 aa	Known RBP	7.15	□□□□□ -1.26
RPT3	YDR394W	HAL5	P38970	855 aa	Known RBP	7.15	□□□□□ -1.26
RPT3	YDR394W	SCW11	P53189	542 aa		7.15	□□□□□ -1.26
RPT3	YDR394W	TY1A-BL	Q12266	440 aa		7.15	□□□□□ -1.26
RPT3	YDR394W	LPD1	P09624	499 aa	Known RBP	7.14	□□□□□ -1.27

Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms