RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 USP32Q8NFA0 1604 aa10.97□□□□□ -0.65
VCL-207ENST00000624354 QRICH2Q9H0J4 1663 aa10.97□□□□□ -0.65
VCL-207ENST00000624354 U2SURPO15042 1029 aaKnown RBP10.96□□□□□ -0.65
VCL-207ENST00000624354 EXOSC9Q06265 439 aaKnown RBP10.96□□□□□ -0.65
VCL-207ENST00000624354 MFAP1P55081 439 aaKnown RBP10.96□□□□□ -0.66
VCL-207ENST00000624354 HDAC1Q13547 482 aaPredicted RBP10.96□□□□□ -0.66
VCL-207ENST00000624354 ITPRIPQ8IWB1 547 aa10.96□□□□□ -0.66
VCL-207ENST00000624354 VGFO15240 615 aaPredicted RBP10.96□□□□□ -0.66
VCL-207ENST00000624354 TRIM27P14373 513 aa10.96□□□□□ -0.66
VCL-207ENST00000624354 SPRYD3Q8NCJ5 442 aa10.96□□□□□ -0.66
VCL-207ENST00000624354 TMPOP42166 694 aaKnown RBP10.95□□□□□ -0.66
VCL-207ENST00000624354 ATF7IPQ6VMQ6 1270 aa10.95□□□□□ -0.66
VCL-207ENST00000624354 CABP2Q9NPB3 220 aa10.95□□□□□ -0.66
VCL-207ENST00000624354 CHMP5Q9NZZ3 219 aa10.95□□□□□ -0.66
VCL-207ENST00000624354 GOLGA6L3A6NEY3 463 aa10.94□□□□□ -0.66
VCL-207ENST00000624354 MCM4P33991 863 aa10.94□□□□□ -0.66
VCL-207ENST00000624354 SSH1Q8WYL5 1049 aa10.94□□□□□ -0.66
VCL-207ENST00000624354 KIDINS220Q9ULH0 1771 aa10.94□□□□□ -0.66
VCL-207ENST00000624354 ZC3H13Q5T200 1668 aaKnown RBP10.94□□□□□ -0.66
VCL-207ENST00000624354 XRCC6P12956 609 aaKnown RBP eCLIP10.94□□□□□ -0.662e-6■□□□□ 9.4
VCL-207ENST00000624354 CEBPAP49715 358 aaPredicted RBP10.93□□□□□ -0.66
VCL-207ENST00000624354 PLEKHF1Q96S99 279 aa10.93□□□□□ -0.66
VCL-207ENST00000624354 ADGRB2O60241 1585 aa10.93□□□□□ -0.66
VCL-207ENST00000624354 IL16Q14005 1332 aa10.93□□□□□ -0.66
VCL-207ENST00000624354 SAFB2Q14151 953 aaKnown RBP eCLIP10.93□□□□□ -0.66
VCL-207ENST00000624354 FBXO31Q5XUX0 539 aaPredicted RBP10.93□□□□□ -0.66
VCL-207ENST00000624354 SMC5Q8IY18 1101 aa10.93□□□□□ -0.66
VCL-207ENST00000624354 ABCC11Q96J66 1382 aa10.93□□□□□ -0.66
VCL-207ENST00000624354 IPO8O15397 1037 aaKnown RBP10.92□□□□□ -0.66
VCL-207ENST00000624354 SRPK2P78362 688 aaKnown RBP10.92□□□□□ -0.66
VCL-207ENST00000624354 HSCBQ8IWL3 235 aa10.92□□□□□ -0.66
VCL-207ENST00000624354 GGNBP2Q9H3C7 697 aa10.92□□□□□ -0.66
VCL-207ENST00000624354 NOB1Q9ULX3 412 aaKnown RBP10.92□□□□□ -0.66
VCL-207ENST00000624354 TRIM35Q9UPQ4 493 aa10.92□□□□□ -0.66
VCL-207ENST00000624354 PPLO60437 1756 aa10.92□□□□□ -0.66
VCL-207ENST00000624354 KIF16BQ96L93 1317 aa10.92□□□□□ -0.66
VCL-207ENST00000624354 TULP4Q9NRJ4 1543 aa10.92□□□□□ -0.66
VCL-207ENST00000624354 A0A1W2PP64 1363 aa10.91□□□□□ -0.66
VCL-207ENST00000624354 GLI2P10070 1586 aa10.91□□□□□ -0.66
VCL-207ENST00000624354 RIPK4P57078 832 aa10.91□□□□□ -0.66
VCL-207ENST00000624354 TMEM57Q8N5G2 664 aa10.91□□□□□ -0.66
VCL-207ENST00000624354 TERF2IPQ9NYB0 399 aa10.91□□□□□ -0.66
VCL-207ENST00000624354 GZF1Q9H116 711 aaPredicted RBP10.9□□□□□ -0.66
VCL-207ENST00000624354 ZBTB40Q9NUA8 1239 aa10.9□□□□□ -0.66
VCL-207ENST00000624354 YEATS2Q9ULM3 1422 aa10.9□□□□□ -0.67
VCL-207ENST00000624354 TRAK2O60296 914 aa10.89□□□□□ -0.67
VCL-207ENST00000624354 STK26Q9P289 416 aa10.89□□□□□ -0.67
VCL-207ENST00000624354 FSD2A1L4K1 749 aa10.89□□□□□ -0.67
VCL-207ENST00000624354 DIAPH1O60610 1272 aaKnown RBP10.89□□□□□ -0.67
VCL-207ENST00000624354 PANK2Q9BZ23 570 aa10.89□□□□□ -0.67
VCL-207ENST00000624354 MLH3Q9UHC1 1453 aa10.89□□□□□ -0.67
VCL-207ENST00000624354 ATAD2Q6PL18 1390 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 POGZQ7Z3K3 1410 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 DDX11L8A8MPP1 907 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 FYB1O15117 783 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 NUCB1Q02818 461 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 ALDH1L2Q3SY69 923 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 PDCL3Q9H2J4 239 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 ESF1Q9H501 851 aaKnown RBP10.88□□□□□ -0.67
VCL-207ENST00000624354 ABCC3O15438 1527 aa10.88□□□□□ -0.67
VCL-207ENST00000624354 TPM2P07951 284 aa10.87□□□□□ -0.67
VCL-207ENST00000624354 RBM25P49756 843 aaKnown RBP10.87□□□□□ -0.67
VCL-207ENST00000624354 LNPKQ9C0E8 428 aa10.87□□□□□ -0.67
VCL-207ENST00000624354 STAG3Q9UJ98 1225 aa10.87□□□□□ -0.67
VCL-207ENST00000624354 FRMPD1Q5SYB0 1578 aa10.87□□□□□ -0.67
VCL-207ENST00000624354 COL3A1P02461 1466 aaPredicted RBP10.87□□□□□ -0.67
VCL-207ENST00000624354 HECW2Q9P2P5 1572 aa10.87□□□□□ -0.67
VCL-207ENST00000624354 CHD1LQ86WJ1 897 aa10.87□□□□□ -0.67
VCL-207ENST00000624354 ARHGEF28Q8N1W1 1705 aaKnown RBP10.86□□□□□ -0.67
VCL-207ENST00000624354 ESPNB1AK53 854 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 HDGFL2Q7Z4V5 671 aaPredicted RBP10.86□□□□□ -0.67
VCL-207ENST00000624354 SNX21Q969T3 373 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 ZNF428Q96B54 188 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 CHMP4BQ9H444 224 aaKnown RBP10.86□□□□□ -0.67
VCL-207ENST00000624354 MRE11P49959 708 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 FCHSD2O94868 740 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 IDI1Q13907 227 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 MINK1Q8N4C8 1332 aaPredicted RBP10.86□□□□□ -0.67
VCL-207ENST00000624354 NEXMIFQ5QGS0 1516 aa10.86□□□□□ -0.67
VCL-207ENST00000624354 MED14O60244 1454 aa10.85□□□□□ -0.67
VCL-207ENST00000624354 ZNF692Q9BU19 519 aaPredicted RBP10.85□□□□□ -0.67
VCL-207ENST00000624354 HSP90AB1P08238 724 aaKnown RBP10.85□□□□□ -0.67
VCL-207ENST00000624354 BMP2KLQ5H9B9 411 aa10.85□□□□□ -0.67
VCL-207ENST00000624354 SLC52A1Q9NWF4 448 aa10.85□□□□□ -0.67
VCL-207ENST00000624354 CALD1Q05682 793 aaKnown RBP10.84□□□□□ -0.67
VCL-207ENST00000624354 PRAM1Q96QH2 718 aa10.84□□□□□ -0.67
VCL-207ENST00000624354 ISY1Q9ULR0 285 aaKnown RBP10.84□□□□□ -0.67
VCL-207ENST00000624354 CIZ1Q9ULV3 898 aaPredicted RBP10.84□□□□□ -0.67
VCL-207ENST00000624354 ZFYVE9O95405 1425 aa10.84□□□□□ -0.67
VCL-207ENST00000624354 GCC1Q96CN9 775 aa10.84□□□□□ -0.67
VCL-207ENST00000624354 PNPLA6Q8IY17 1366 aa10.84□□□□□ -0.67
VCL-207ENST00000624354 BRPF1P55201 1214 aaPredicted RBP10.84□□□□□ -0.67
VCL-207ENST00000624354 NCOA3Q9Y6Q9 1424 aa10.83□□□□□ -0.67
VCL-207ENST00000624354 CAMSAP1Q5T5Y3 1602 aa10.83□□□□□ -0.68
VCL-207ENST00000624354 ANKRD45Q5TZF3 282 aa10.83□□□□□ -0.68
VCL-207ENST00000624354 TRIM44Q96DX7 344 aaPredicted RBP10.83□□□□□ -0.68
VCL-207ENST00000624354 GBP4Q96PP9 640 aa10.83□□□□□ -0.68
VCL-207ENST00000624354 PRKAR2BP31323 418 aa10.83□□□□□ -0.68
VCL-207ENST00000624354 DDIT3P35638 169 aa10.83□□□□□ -0.68
VCL-207ENST00000624354 RBM10P98175 930 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms