RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FAM161AQ3B820 660 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 RTN4Q9NQC3 1192 aaKnown RBP7.14□□□□□ -1.27
LIMA1-215ENST00000552823 NKTRP30414 1462 aaKnown RBP7.13□□□□□ -1.27
LIMA1-215ENST00000552823 MROH1Q8NDA8 1641 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 MAP3K4Q9Y6R4 1608 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 USHBP1Q8N6Y0 703 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 CCDC61Q9Y6R9 512 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 ZMYM4Q5VZL5 1548 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 MROH2AA6NES4 1674 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 POLR3AO14802 1390 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-215ENST00000552823 FRMPD1Q5SYB0 1578 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 KIF1BO60333 1816 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 TRIM27P14373 513 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 SLC4A10Q6U841 1118 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 AMOTL2Q9Y2J4 779 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 EID1Q9Y6B2 187 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 RIMS2Q9UQ26 1411 aa7.13□□□□□ -1.27
LIMA1-215ENST00000552823 AMPHP49418 695 aa7.12□□□□□ -1.27
LIMA1-215ENST00000552823 NLRP6P59044 892 aa7.12□□□□□ -1.27
LIMA1-215ENST00000552823 TRMT2AQ8IZ69 625 aaKnown RBP7.12□□□□□ -1.27
LIMA1-215ENST00000552823 FOXD4L1Q9NU39 408 aa7.12□□□□□ -1.27
LIMA1-215ENST00000552823 WDR63Q8IWG1 891 aa7.12□□□□□ -1.27
LIMA1-215ENST00000552823 ATAD2Q6PL18 1390 aa7.12□□□□□ -1.27
LIMA1-215ENST00000552823 ACEP12821 1306 aa7.11□□□□□ -1.27
LIMA1-215ENST00000552823 HECW2Q9P2P5 1572 aa7.11□□□□□ -1.27
LIMA1-215ENST00000552823 HDGFP51858 240 aaKnown RBP7.11□□□□□ -1.27
LIMA1-215ENST00000552823 C8orf34Q49A92 452 aa7.11□□□□□ -1.27
LIMA1-215ENST00000552823 ANKRD45Q5TZF3 282 aa7.11□□□□□ -1.27
LIMA1-215ENST00000552823 RWDD1Q9H446 243 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-215ENST00000552823 KDM2BQ8NHM5 1336 aa7.11□□□□□ -1.27
LIMA1-215ENST00000552823 PRR36Q9H6K5 1346 aa7.11□□□□□ -1.27
LIMA1-215ENST00000552823 MS4A1P11836 297 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 C8orf58Q8NAV2 365 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 MYOM2P54296 1465 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 KDM5AP29375 1690 aaKnown RBP7.1□□□□□ -1.27
LIMA1-215ENST00000552823 ARAP3Q8WWN8 1544 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 PDE3AQ14432 1141 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 NEO1Q92859 1461 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 MVPQ14764 893 aaKnown RBP7.1□□□□□ -1.27
LIMA1-215ENST00000552823 ATF7IPQ6VMQ6 1270 aa7.1□□□□□ -1.27
LIMA1-215ENST00000552823 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.09□□□□□ -1.27
LIMA1-215ENST00000552823 PLEKHF1Q96S99 279 aa7.09□□□□□ -1.27
LIMA1-215ENST00000552823 PPIP5K1Q6PFW1 1433 aa7.09□□□□□ -1.27
LIMA1-215ENST00000552823 NPC1L1Q9UHC9 1359 aa7.09□□□□□ -1.27
LIMA1-215ENST00000552823 TWISTNBQ3B726 338 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-215ENST00000552823 MBIPQ9NS73 344 aa7.09□□□□□ -1.27
LIMA1-215ENST00000552823 ADGRB3O60242 1522 aa7.09□□□□□ -1.28
LIMA1-215ENST00000552823 TULP4Q9NRJ4 1543 aa7.09□□□□□ -1.28
LIMA1-215ENST00000552823 IQGAP1P46940 1657 aa7.09□□□□□ -1.28
LIMA1-215ENST00000552823 F6X3S4 739 aa7.09□□□□□ -1.28
LIMA1-215ENST00000552823 NFE2L2Q16236 605 aa7.09□□□□□ -1.28
LIMA1-215ENST00000552823 RSPH6AQ9H0K4 717 aa7.09□□□□□ -1.28
LIMA1-215ENST00000552823 SYNMO15061 1565 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 VWDEQ8N2E2 1590 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 DIP2CQ9Y2E4 1556 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 INSRP06213 1382 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 FCHSD2O94868 740 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 EIF4A2Q14240 407 aaKnown RBP7.08□□□□□ -1.28
LIMA1-215ENST00000552823 ABTB2Q8N961 1025 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 TNRQ92752 1358 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 KCNA6P17658 529 aa7.08□□□□□ -1.28
LIMA1-215ENST00000552823 EIF2S2P20042 333 aaKnown RBP7.08□□□□□ -1.28
LIMA1-215ENST00000552823 UPF2Q9HAU5 1272 aaKnown RBP7.08□□□□□ -1.28
LIMA1-215ENST00000552823 RTF1Q92541 710 aaKnown RBP7.07□□□□□ -1.28
LIMA1-215ENST00000552823 IPO8O15397 1037 aaKnown RBP7.07□□□□□ -1.28
LIMA1-215ENST00000552823 FRAT2O75474 233 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-215ENST00000552823 ESCO1Q5FWF5 840 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 TTC21BQ7Z4L5 1316 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 ADGRB1O14514 1584 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 ABCC11Q96J66 1382 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 ROBO2Q9HCK4 1378 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 SBNO2Q9Y2G9 1366 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 SIGLEC1Q9BZZ2 1709 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 SMARCA5O60264 1052 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-215ENST00000552823 IL13P35225 146 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 TPRNQ4KMQ1 711 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 DDRGK1Q96HY6 314 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 PNNQ9H307 717 aaKnown RBP7.07□□□□□ -1.28
LIMA1-215ENST00000552823 GLI2P10070 1586 aa7.07□□□□□ -1.28
LIMA1-215ENST00000552823 DEPDC5O75140 1603 aa7.06□□□□□ -1.28
LIMA1-215ENST00000552823 ANXA1P04083 346 aa7.06□□□□□ -1.28
LIMA1-215ENST00000552823 DDX19BQ9UMR2 479 aa7.06□□□□□ -1.28
LIMA1-215ENST00000552823 VAMP4O75379 141 aa7.06□□□□□ -1.28
LIMA1-215ENST00000552823 GZF1Q9H116 711 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-215ENST00000552823 SLC4A2P04920 1241 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 NFKBIBQ15653 356 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 C16orf71Q8IYS4 520 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-215ENST00000552823 DDX17Q92841 729 aaKnown RBP7.05□□□□□ -1.28
LIMA1-215ENST00000552823 TSPYL4Q9UJ04 414 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 NEXMIFQ5QGS0 1516 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 GNAI1P63096 354 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 QRICH2Q9H0J4 1663 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 PIK3C2BO00750 1634 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 CAMSAP1Q5T5Y3 1602 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 PSME1Q06323 249 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 TSHZ3Q63HK5 1081 aa7.05□□□□□ -1.28
LIMA1-215ENST00000552823 SETD1BQ9UPS6 1966 aaKnown RBP7.04□□□□□ -1.28
LIMA1-215ENST00000552823 A2ML1A8K2U0 1454 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 G2E3Q7L622 706 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 MYO5BQ9ULV0 1848 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms