RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 MTERF4Q7Z6M4 381 aaKnown RBP10.92□□□□□ -0.66
VPS13D-212ENST00000543766 TSPAN18Q96SJ8 248 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 SIN3AQ96ST3 1273 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 NOL10Q9BSC4 688 aaKnown RBP10.92□□□□□ -0.66
VPS13D-212ENST00000543766 RMI1Q9H9A7 625 aa10.92□□□□□ -0.66
VPS13D-212ENST00000543766 LRRC9Q6ZRR7 1453 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 ARHGEF1Q92888 912 aaKnown RBP10.91□□□□□ -0.66
VPS13D-212ENST00000543766 CNTLNQ9NXG0 1405 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 WDR78Q5VTH9 848 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 CASKIN1Q8WXD9 1431 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 H0YHG0 523 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 RAB11FIP3O75154 756 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 STK10O94804 968 aaKnown RBP10.91□□□□□ -0.66
VPS13D-212ENST00000543766 SARNPP82979 210 aaKnown RBP10.91□□□□□ -0.66
VPS13D-212ENST00000543766 GABBR1Q9UBS5 961 aa10.91□□□□□ -0.66
VPS13D-212ENST00000543766 TERF1P54274 439 aa10.9□□□□□ -0.66
VPS13D-212ENST00000543766 MEX3CQ5U5Q3 659 aaKnown RBP10.9□□□□□ -0.66
VPS13D-212ENST00000543766 SNAPC4Q5SXM2 1469 aa10.9□□□□□ -0.66
VPS13D-212ENST00000543766 IRAK4Q9NWZ3 460 aa10.9□□□□□ -0.66
VPS13D-212ENST00000543766 MS4A1P11836 297 aa10.9□□□□□ -0.67
VPS13D-212ENST00000543766 PPP2R5AQ15172 486 aa10.9□□□□□ -0.67
VPS13D-212ENST00000543766 ANKRD13AQ8IZ07 590 aa10.9□□□□□ -0.67
VPS13D-212ENST00000543766 SPRYD3Q8NCJ5 442 aa10.9□□□□□ -0.67
VPS13D-212ENST00000543766 MICALL1Q8N3F8 863 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 GAS2L2Q8NHY3 880 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 KLHL42Q9P2K6 505 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 GOLGA6L3A6NEY3 463 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 MSL3Q8N5Y2 521 aaKnown RBP10.89□□□□□ -0.67
VPS13D-212ENST00000543766 WDR70Q9NW82 654 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 GLI2P10070 1586 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 LRRIQ1Q96JM4 1722 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 TTC30BQ8N4P2 665 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 GOPCQ9HD26 462 aa10.89□□□□□ -0.67
VPS13D-212ENST00000543766 R3HCC1Q9Y3T6 440 aaKnown RBP10.89□□□□□ -0.67
VPS13D-212ENST00000543766 CCDC66A2RUB6 948 aa10.88□□□□□ -0.67
VPS13D-212ENST00000543766 ZKSCAN8Q15776 578 aaPredicted RBP10.88□□□□□ -0.67
VPS13D-212ENST00000543766 TIGD1Q96MW7 591 aa10.88□□□□□ -0.67
VPS13D-212ENST00000543766 RPS6KL1Q9Y6S9 549 aa10.88□□□□□ -0.67
VPS13D-212ENST00000543766 PDE4AP27815 886 aa10.87□□□□□ -0.67
VPS13D-212ENST00000543766 VIRMAQ69YN4 1812 aaKnown RBP10.87□□□□□ -0.67
VPS13D-212ENST00000543766 CAPN2P17655 700 aa10.87□□□□□ -0.67
VPS13D-212ENST00000543766 MTA1Q13330 715 aa10.87□□□□□ -0.67
VPS13D-212ENST00000543766 NUCKS1Q9H1E3 243 aaKnown RBP10.87□□□□□ -0.67
VPS13D-212ENST00000543766 NEXNQ0ZGT2 675 aa10.86□□□□□ -0.67
VPS13D-212ENST00000543766 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
VPS13D-212ENST00000543766 GRIN2AQ12879 1464 aa10.86□□□□□ -0.67
VPS13D-212ENST00000543766 IQSEC3Q9UPP2 1182 aaPredicted RBP10.86□□□□□ -0.67
VPS13D-212ENST00000543766 ADCY10Q96PN6 1610 aa10.86□□□□□ -0.67
VPS13D-212ENST00000543766 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS13D-212ENST00000543766 CAND2O75155 1236 aa10.85□□□□□ -0.67
VPS13D-212ENST00000543766 WDHD1O75717 1129 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-212ENST00000543766 SKAP1Q86WV1 359 aa10.85□□□□□ -0.67
VPS13D-212ENST00000543766 SUGT1Q9Y2Z0 365 aa10.85□□□□□ -0.67
VPS13D-212ENST00000543766 ESPNB1AK53 854 aa10.85□□□□□ -0.67
VPS13D-212ENST00000543766 ERCC6L2Q5T890 1561 aa10.84□□□□□ -0.67
VPS13D-212ENST00000543766 MAP3K4Q9Y6R4 1608 aa10.84□□□□□ -0.67
VPS13D-212ENST00000543766 E2F5Q15329 346 aa10.84□□□□□ -0.67
VPS13D-212ENST00000543766 GOLGA6L6A8MZA4 724 aa10.84□□□□□ -0.67
VPS13D-212ENST00000543766 IPO7O95373 1038 aaKnown RBP10.84□□□□□ -0.67
VPS13D-212ENST00000543766 ANAPC4Q9UJX5 808 aa10.84□□□□□ -0.67
VPS13D-212ENST00000543766 PAX7P23759 505 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 LONRF3Q496Y0 759 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 HDGFL1Q5TGJ6 251 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 C16orf87Q6PH81 154 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 NCAPGQ9BPX3 1015 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 NUDCQ9Y266 331 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 INF2Q27J81 1249 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 NCOA1Q15788 1441 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 TTC30AQ86WT1 665 aa10.83□□□□□ -0.68
VPS13D-212ENST00000543766 PUF60Q9UHX1 559 aaKnown RBP10.83□□□□□ -0.68
VPS13D-212ENST00000543766 IQGAP2Q13576 1575 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 UPF2Q9HAU5 1272 aaKnown RBP10.82□□□□□ -0.68
VPS13D-212ENST00000543766 ECEL1O95672 775 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 GOLGA6L1Q8N7Z2 621 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 SPOCK3Q9BQ16 436 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 TSPYL1Q9H0U9 437 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 DIP2BQ9P265 1576 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 FHOD3Q2V2M9 1422 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 PPFIA4O75335 1185 aa10.82□□□□□ -0.68
VPS13D-212ENST00000543766 PRKRIP1Q9H875 184 aaPredicted RBP10.82□□□□□ -0.68
VPS13D-212ENST00000543766 RETREG2Q8NC44 543 aa10.81□□□□□ -0.68
VPS13D-212ENST00000543766 SLC24A3Q9HC58 644 aa10.81□□□□□ -0.68
VPS13D-212ENST00000543766 UGGT2Q9NYU1 1516 aa10.81□□□□□ -0.68
VPS13D-212ENST00000543766 NAT1P18440 290 aa10.81□□□□□ -0.68
VPS13D-212ENST00000543766 RSPH14Q9UHP6 348 aa10.81□□□□□ -0.68
VPS13D-212ENST00000543766 KIF3AQ9Y496 699 aa10.81□□□□□ -0.68
VPS13D-212ENST00000543766 TDRD9Q8NDG6 1382 aaKnown RBP10.81□□□□□ -0.68
VPS13D-212ENST00000543766 UQCRHLA0A096LP55 91 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 UQCRHP07919 91 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 SMAPO00193 183 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 CREB3O43889 395 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 ANKRD23Q86SG2 305 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 STK11IPQ8N1F8 1099 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 ITFG2Q969R8 447 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 BORCS6Q96GS4 357 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 SMC3Q9UQE7 1217 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 DDX49Q9Y6V7 483 aaKnown RBP10.8□□□□□ -0.68
VPS13D-212ENST00000543766 EHBP1L1Q8N3D4 1523 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 HECW1Q76N89 1606 aa10.8□□□□□ -0.68
VPS13D-212ENST00000543766 SPDYE4A6NLX3 237 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms