RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ANKRD30BQ9BXX2 1392 aa9.93□□□□□ -0.82
VPS52-219ENST00000493379 LRRC59Q96AG4 307 aaKnown RBP9.93□□□□□ -0.82
VPS52-219ENST00000493379 GJD4Q96KN9 370 aaPredicted RBP9.93□□□□□ -0.82
VPS52-219ENST00000493379 PCDH10Q9P2E7 1040 aa9.93□□□□□ -0.82
VPS52-219ENST00000493379 PPP1R1BQ9UD71 204 aaPredicted RBP9.93□□□□□ -0.82
VPS52-219ENST00000493379 GLI3P10071 1580 aa9.92□□□□□ -0.82
VPS52-219ENST00000493379 TRPM2O94759 1503 aa9.92□□□□□ -0.82
VPS52-219ENST00000493379 HDGFP51858 240 aaKnown RBP9.92□□□□□ -0.82
VPS52-219ENST00000493379 ZFYVE9O95405 1425 aa9.91□□□□□ -0.82
VPS52-219ENST00000493379 CHD2O14647 1828 aaKnown RBP9.91□□□□□ -0.82
VPS52-219ENST00000493379 RPGRIP1LQ68CZ1 1315 aa9.91□□□□□ -0.82
VPS52-219ENST00000493379 PAK3O75914 559 aaPredicted RBP9.91□□□□□ -0.82
VPS52-219ENST00000493379 ATF3P18847 181 aa9.91□□□□□ -0.82
VPS52-219ENST00000493379 CHRDL2Q6WN34 429 aa9.91□□□□□ -0.82
VPS52-219ENST00000493379 TMEM131LA2VDJ0 1609 aa9.91□□□□□ -0.82
VPS52-219ENST00000493379 CADPS2Q86UW7 1296 aa9.9□□□□□ -0.82
VPS52-219ENST00000493379 IFNL1Q8IU54 200 aa9.9□□□□□ -0.82
VPS52-219ENST00000493379 PIP4P2Q8N4L2 257 aa9.9□□□□□ -0.82
VPS52-219ENST00000493379 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS52-219ENST00000493379 MFRPQ9BY79 579 aa9.9□□□□□ -0.82
VPS52-219ENST00000493379 ADGRB3O60242 1522 aa9.9□□□□□ -0.82
VPS52-219ENST00000493379 NINLQ9Y2I6 1382 aa9.89□□□□□ -0.83
VPS52-219ENST00000493379 COL13A1Q5TAT6 717 aaPredicted RBP9.89□□□□□ -0.83
VPS52-219ENST00000493379 SPHKAPQ2M3C7 1700 aa9.89□□□□□ -0.83
VPS52-219ENST00000493379 SPATA31E1Q6ZUB1 1445 aa9.89□□□□□ -0.83
VPS52-219ENST00000493379 RALGAPBQ86X10 1494 aa9.88□□□□□ -0.83
VPS52-219ENST00000493379 MAP3K13O43283 966 aa9.88□□□□□ -0.83
VPS52-219ENST00000493379 KIF12Q96FN5 646 aa9.88□□□□□ -0.83
VPS52-219ENST00000493379 STAC3Q96MF2 364 aa9.88□□□□□ -0.83
VPS52-219ENST00000493379 PRELPP51888 382 aa9.87□□□□□ -0.83
VPS52-219ENST00000493379 EZH2Q15910 746 aaKnown RBP9.87□□□□□ -0.83
VPS52-219ENST00000493379 SEPT12Q8IYM1 358 aa9.87□□□□□ -0.83
VPS52-219ENST00000493379 TBX22Q9Y458 520 aa9.87□□□□□ -0.83
VPS52-219ENST00000493379 RIMS2Q9UQ26 1411 aa9.87□□□□□ -0.83
VPS52-219ENST00000493379 PLEKHG1Q9ULL1 1385 aa9.87□□□□□ -0.83
VPS52-219ENST00000493379 CCDC144AA2RUR9 1427 aa9.86□□□□□ -0.83
VPS52-219ENST00000493379 C19orf44Q9H6X5 657 aa9.86□□□□□ -0.83
VPS52-219ENST00000493379 CLTCL1P53675 1640 aa9.85□□□□□ -0.83
VPS52-219ENST00000493379 PTCH1Q13635 1447 aa9.85□□□□□ -0.83
VPS52-219ENST00000493379 DHX57Q6P158 1386 aaKnown RBP9.84□□□□□ -0.83
VPS52-219ENST00000493379 ADAMTS13Q76LX8 1427 aa9.83□□□□□ -0.84
VPS52-219ENST00000493379 FAM182BQ5T319 152 aa9.83□□□□□ -0.84
VPS52-219ENST00000493379 KRT27Q7Z3Y8 459 aa9.83□□□□□ -0.84
VPS52-219ENST00000493379 EFCAB3Q8N7B9 438 aa9.83□□□□□ -0.84
VPS52-219ENST00000493379 SPON1Q9HCB6 807 aa9.83□□□□□ -0.84
VPS52-219ENST00000493379 PIK3R4Q99570 1358 aa9.83□□□□□ -0.84
VPS52-219ENST00000493379 MST1RQ04912 1400 aa9.82□□□□□ -0.84
VPS52-219ENST00000493379 NCOA3Q9Y6Q9 1424 aa9.82□□□□□ -0.84
VPS52-219ENST00000493379 RGPD1P0DJD0 1748 aa9.82□□□□□ -0.84
VPS52-219ENST00000493379 MARF1Q9Y4F3 1742 aaKnown RBP9.82□□□□□ -0.84
VPS52-219ENST00000493379 FBXO22Q8NEZ5 403 aa9.82□□□□□ -0.84
VPS52-219ENST00000493379 WDR70Q9NW82 654 aa9.82□□□□□ -0.84
VPS52-219ENST00000493379 TNS1Q9HBL0 1735 aaKnown RBP9.82□□□□□ -0.84
VPS52-219ENST00000493379 NEXMIFQ5QGS0 1516 aa9.82□□□□□ -0.84
VPS52-219ENST00000493379 KCNQ2O43526 872 aa9.81□□□□□ -0.84
VPS52-219ENST00000493379 CABP2Q9NPB3 220 aa9.81□□□□□ -0.84
VPS52-219ENST00000493379 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.81□□□□□ -0.84
VPS52-219ENST00000493379 NRXN1Q9ULB1 1477 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 SHANK3Q9BYB0 1731 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 SOX12O15370 315 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 PPP1R37O75864 691 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 HSPA6P17066 643 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 NLRP6P59044 892 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 ZNF326Q5BKZ1 582 aaKnown RBP9.8□□□□□ -0.84
VPS52-219ENST00000493379 TNS4Q8IZW8 715 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 KCNV2Q8TDN2 545 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 PCGF6Q9BYE7 350 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 NRKQ7Z2Y5 1582 aa9.8□□□□□ -0.84
VPS52-219ENST00000493379 RGL3Q3MIN7 710 aa9.79□□□□□ -0.84
VPS52-219ENST00000493379 ADGRF5Q8IZF2 1346 aa9.79□□□□□ -0.84
VPS52-219ENST00000493379 CLSPNQ9HAW4 1339 aa9.79□□□□□ -0.84
VPS52-219ENST00000493379 MYOM1P52179 1685 aa9.78□□□□□ -0.84
VPS52-219ENST00000493379 KIF1BO60333 1816 aa9.78□□□□□ -0.84
VPS52-219ENST00000493379 MYO5BQ9ULV0 1848 aa9.78□□□□□ -0.84
VPS52-219ENST00000493379 PPP1R15AO75807 674 aaPredicted RBP9.78□□□□□ -0.84
VPS52-219ENST00000493379 CAMKK2Q96RR4 588 aa9.78□□□□□ -0.84
VPS52-219ENST00000493379 C14orf93Q9H972 538 aaKnown RBP9.78□□□□□ -0.84
VPS52-219ENST00000493379 PHF8Q9UPP1 1060 aa9.78□□□□□ -0.84
VPS52-219ENST00000493379 PRAG1Q86YV5 1406 aa9.78□□□□□ -0.84
VPS52-219ENST00000493379 NUP188Q5SRE5 1749 aa9.77□□□□□ -0.85
VPS52-219ENST00000493379 CD44P16070 742 aaKnown RBP9.77□□□□□ -0.85
VPS52-219ENST00000493379 UNC5CLQ8IV45 518 aa9.77□□□□□ -0.85
VPS52-219ENST00000493379 COL22A1Q8NFW1 1626 aaPredicted RBP9.77□□□□□ -0.85
VPS52-219ENST00000493379 MYOM2P54296 1465 aa9.77□□□□□ -0.85
VPS52-219ENST00000493379 DISP2A7MBM2 1401 aa9.76□□□□□ -0.85
VPS52-219ENST00000493379 PIK3C2GO75747 1445 aa9.76□□□□□ -0.85
VPS52-219ENST00000493379 SIRT1Q96EB6 747 aa9.76□□□□□ -0.85
VPS52-219ENST00000493379 METP08581 1390 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 NRXN3Q9Y4C0 1643 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 PTPRUQ92729 1446 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 RREB1Q92766 1687 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 A0A0G2JS52 829 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 MYT1Q01538 1121 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 PHF12Q96QT6 1004 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 SIN3AQ96ST3 1273 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 PPLO60437 1756 aa9.75□□□□□ -0.85
VPS52-219ENST00000493379 SLIT2O94813 1529 aa9.74□□□□□ -0.85
VPS52-219ENST00000493379 DCAF11Q8TEB1 546 aa9.74□□□□□ -0.85
VPS52-219ENST00000493379 TIMELESSQ9UNS1 1208 aa9.74□□□□□ -0.85
VPS52-219ENST00000493379 AMOTL2Q9Y2J4 779 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms