RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CHIC1Q5VXU3 224 aa18.84■□□□□ 0.61
VPS52-219ENST00000493379 AEBP2Q6ZN18 517 aaPredicted RBP18.81■□□□□ 0.6
VPS52-219ENST00000493379 PHF23Q9BUL5 403 aaPredicted RBP16.65■□□□□ 0.26
VPS52-219ENST00000493379 NISCHQ9Y2I1 1504 aa16.24■□□□□ 0.19
VPS52-219ENST00000493379 SENP3Q9H4L4 574 aaPredicted RBP15.85■□□□□ 0.13
VPS52-219ENST00000493379 DNAJC5BQ9UF47 199 aa15.73■□□□□ 0.11
VPS52-219ENST00000493379 ABCC9O60706 1549 aa15.66■□□□□ 0.1
VPS52-219ENST00000493379 PLPPR3Q6T4P5 718 aa15.51■□□□□ 0.07
VPS52-219ENST00000493379 DNAJC5Q9H3Z4 198 aa15.11■□□□□ 0.01
VPS52-219ENST00000493379 FOXD1Q16676 465 aa14.68□□□□□ -0.06
VPS52-219ENST00000493379 ADRA2BP18089 450 aa14.54□□□□□ -0.08
VPS52-219ENST00000493379 PPP6R1Q9UPN7 881 aa14.53□□□□□ -0.08
VPS52-219ENST00000493379 PABPN1Q86U42 306 aaKnown RBP eCLIP14.44□□□□□ -0.1
VPS52-219ENST00000493379 CCDC180Q9P1Z9 1646 aa14.43□□□□□ -0.1
VPS52-219ENST00000493379 RB1CC1Q8TDY2 1594 aa14.28□□□□□ -0.12
VPS52-219ENST00000493379 CECR2Q9BXF3 1484 aa14.16□□□□□ -0.14
VPS52-219ENST00000493379 UNC13AQ9UPW8 1703 aa14.1□□□□□ -0.15
VPS52-219ENST00000493379 TRIM41Q8WV44 630 aa14.1□□□□□ -0.15
VPS52-219ENST00000493379 CC2D2AQ9P2K1 1620 aa14.05□□□□□ -0.16
VPS52-219ENST00000493379 BICRAQ9NZM4 1560 aa14.01□□□□□ -0.17
VPS52-219ENST00000493379 KCNA4P22459 653 aa14□□□□□ -0.17
VPS52-219ENST00000493379 PIAS4Q8N2W9 510 aaPredicted RBP13.94□□□□□ -0.18
VPS52-219ENST00000493379 NACADO15069 1562 aa13.88□□□□□ -0.19
VPS52-219ENST00000493379 CUX2O14529 1486 aa13.8□□□□□ -0.2
VPS52-219ENST00000493379 DCAF8L2P0C7V8 631 aa13.76□□□□□ -0.21
VPS52-219ENST00000493379 PPP4R3CPQ6ZMV5 832 aa13.73□□□□□ -0.21
VPS52-219ENST00000493379 EIF4G1Q04637 1599 aaKnown RBP13.71□□□□□ -0.21
VPS52-219ENST00000493379 EHMT2Q96KQ7 1210 aa13.58□□□□□ -0.24
VPS52-219ENST00000493379 MYO15BQ96JP2 1530 aa13.58□□□□□ -0.24
VPS52-219ENST00000493379 ZCCHC6Q5VYS8 1495 aaKnown RBP13.53□□□□□ -0.24
VPS52-219ENST00000493379 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
VPS52-219ENST00000493379 DCAF1Q9Y4B6 1507 aa13.51□□□□□ -0.25
VPS52-219ENST00000493379 NCBP3Q53F19 620 aaKnown RBP13.5□□□□□ -0.25
VPS52-219ENST00000493379 SHROOM4Q9ULL8 1493 aa13.48□□□□□ -0.25
VPS52-219ENST00000493379 SLC4A1APQ9BWU0 796 aaKnown RBP13.4□□□□□ -0.26
VPS52-219ENST00000493379 NPM3O75607 178 aaKnown RBP13.33□□□□□ -0.28
VPS52-219ENST00000493379 MSH5O43196 834 aa13.31□□□□□ -0.28
VPS52-219ENST00000493379 SCAF1Q9H7N4 1312 aaKnown RBP13.26□□□□□ -0.29
VPS52-219ENST00000493379 CNKSR2Q8WXI2 1034 aa13.24□□□□□ -0.29
VPS52-219ENST00000493379 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
VPS52-219ENST00000493379 SCRIBQ14160 1630 aa13.23□□□□□ -0.29
VPS52-219ENST00000493379 ILDR1Q86SU0 546 aaPredicted RBP13.21□□□□□ -0.29
VPS52-219ENST00000493379 THOC2Q8NI27 1593 aaKnown RBP13.19□□□□□ -0.3
VPS52-219ENST00000493379 NESP48681 1621 aa13.17□□□□□ -0.3
VPS52-219ENST00000493379 TRHP20396 242 aaPredicted RBP13.08□□□□□ -0.32
VPS52-219ENST00000493379 RIMBP3CA6NJZ7 1639 aa13.06□□□□□ -0.32
VPS52-219ENST00000493379 RIMBP3BA6NNM3 1639 aa13.06□□□□□ -0.32
VPS52-219ENST00000493379 RIMBP3Q9UFD9 1639 aa13.06□□□□□ -0.32
VPS52-219ENST00000493379 BAZ1AQ9NRL2 1556 aaPredicted RBP13.05□□□□□ -0.32
VPS52-219ENST00000493379 SMARCA2P51531 1590 aa13.04□□□□□ -0.32
VPS52-219ENST00000493379 MAPK8IP2Q13387 824 aaPredicted RBP13.03□□□□□ -0.32
VPS52-219ENST00000493379 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
VPS52-219ENST00000493379 KIF21AQ7Z4S6 1674 aa12.94□□□□□ -0.34
VPS52-219ENST00000493379 ZBTB22O15209 634 aa12.9□□□□□ -0.34
VPS52-219ENST00000493379 CYB5RLQ6IPT4 315 aa12.87□□□□□ -0.35
VPS52-219ENST00000493379 ARHGEF11O15085 1522 aa12.87□□□□□ -0.35
VPS52-219ENST00000493379 RNF216Q9NWF9 866 aaPredicted RBP12.86□□□□□ -0.35
VPS52-219ENST00000493379 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
VPS52-219ENST00000493379 DMRT2Q9Y5R5 561 aa12.75□□□□□ -0.37
VPS52-219ENST00000493379 LAMC3Q9Y6N6 1575 aa12.73□□□□□ -0.37
VPS52-219ENST00000493379 FOXD4L1Q9NU39 408 aa12.72□□□□□ -0.37
VPS52-219ENST00000493379 ATAD2BQ9ULI0 1458 aa12.72□□□□□ -0.37
VPS52-219ENST00000493379 WDR62O43379 1518 aa12.7□□□□□ -0.38
VPS52-219ENST00000493379 ARAP1Q96P48 1450 aa12.7□□□□□ -0.38
VPS52-219ENST00000493379 MRC2Q9UBG0 1479 aa12.7□□□□□ -0.38
VPS52-219ENST00000493379 HOXD11P31277 338 aaPredicted RBP12.69□□□□□ -0.38
VPS52-219ENST00000493379 PDS5BQ9NTI5 1447 aa12.69□□□□□ -0.38
VPS52-219ENST00000493379 HMGXB3Q12766 1538 aa12.65□□□□□ -0.38
VPS52-219ENST00000493379 BAZ1BQ9UIG0 1483 aaKnown RBP12.52□□□□□ -0.41
VPS52-219ENST00000493379 SMARCA4P51532 1647 aa12.51□□□□□ -0.41
VPS52-219ENST00000493379 PEG3Q9GZU2 1588 aa12.49□□□□□ -0.41
VPS52-219ENST00000493379 MROH2BQ7Z745 1585 aa12.48□□□□□ -0.41
VPS52-219ENST00000493379 SLC4A2P04920 1241 aa12.48□□□□□ -0.41
VPS52-219ENST00000493379 KDM4FA0A1W2PPD8 638 aa12.46□□□□□ -0.41
VPS52-219ENST00000493379 CADPSQ9ULU8 1353 aa12.43□□□□□ -0.42
VPS52-219ENST00000493379 CEP164Q9UPV0 1460 aa12.42□□□□□ -0.42
VPS52-219ENST00000493379 RSF1Q96T23 1441 aaPredicted RBP12.42□□□□□ -0.42
VPS52-219ENST00000493379 ZNF608Q9ULD9 1512 aaPredicted RBP12.41□□□□□ -0.42
VPS52-219ENST00000493379 LMTK3Q96Q04 1460 aa12.4□□□□□ -0.42
VPS52-219ENST00000493379 CHD1O14646 1710 aa12.39□□□□□ -0.43
VPS52-219ENST00000493379 ILDR2Q71H61 639 aa12.35□□□□□ -0.43
VPS52-219ENST00000493379 URB2Q14146 1524 aaKnown RBP12.34□□□□□ -0.43
VPS52-219ENST00000493379 FBXO41Q8TF61 875 aa12.34□□□□□ -0.43
VPS52-219ENST00000493379 SOCS7O14512 581 aa12.33□□□□□ -0.44
VPS52-219ENST00000493379 FANCD2Q9BXW9 1451 aa12.33□□□□□ -0.44
VPS52-219ENST00000493379 MYCNP04198 464 aaPredicted RBP12.29□□□□□ -0.44
VPS52-219ENST00000493379 ERCC6L2Q5T890 1561 aa12.29□□□□□ -0.44
VPS52-219ENST00000493379 WIZO95785 1651 aa12.28□□□□□ -0.44
VPS52-219ENST00000493379 HECW2Q9P2P5 1572 aa12.27□□□□□ -0.44
VPS52-219ENST00000493379 FBLN2P98095 1184 aa12.27□□□□□ -0.45
VPS52-219ENST00000493379 ATXN8OSP0DMR3 200 aa12.24□□□□□ -0.45
VPS52-219ENST00000493379 EIF4G3O43432 1585 aaKnown RBP12.23□□□□□ -0.45
VPS52-219ENST00000493379 TOP2AP11388 1531 aaKnown RBP12.21□□□□□ -0.46
VPS52-219ENST00000493379 KIF13AQ9H1H9 1805 aa12.19□□□□□ -0.46
VPS52-219ENST00000493379 IFT140Q96RY7 1462 aa12.19□□□□□ -0.46
VPS52-219ENST00000493379 CLASP1Q7Z460 1538 aa12.16□□□□□ -0.46
VPS52-219ENST00000493379 AQRO60306 1485 aaKnown RBP eCLIP12.14□□□□□ -0.474e-7■■■■■ 31.2
VPS52-219ENST00000493379 DCAF8L1A6NGE4 600 aa12.13□□□□□ -0.47
VPS52-219ENST00000493379 DISP3Q9P2K9 1392 aa12.13□□□□□ -0.47
VPS52-219ENST00000493379 GAPVD1Q14C86 1478 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms