RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 NLRP1Q9C000 1473 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 CABP2Q9NPB3 220 aa11.31□□□□□ -0.6
HDAC3-202ENST00000459727 IPO8O15397 1037 aaKnown RBP11.3□□□□□ -0.6
HDAC3-202ENST00000459727 TNNT2P45379 298 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-202ENST00000459727 BECN1Q14457 450 aa11.3□□□□□ -0.6
HDAC3-202ENST00000459727 FBXO41Q8TF61 875 aa11.3□□□□□ -0.6
HDAC3-202ENST00000459727 SIRT1Q96EB6 747 aa11.3□□□□□ -0.6
HDAC3-202ENST00000459727 PRAM1Q96QH2 718 aa11.3□□□□□ -0.6
HDAC3-202ENST00000459727 FAM135BQ49AJ0 1406 aa11.29□□□□□ -0.6
HDAC3-202ENST00000459727 EDC4Q6P2E9 1401 aaKnown RBP11.29□□□□□ -0.6
HDAC3-202ENST00000459727 DIAPH1O60610 1272 aaKnown RBP11.29□□□□□ -0.6
HDAC3-202ENST00000459727 FCHSD2O94868 740 aa11.29□□□□□ -0.6
HDAC3-202ENST00000459727 MVPQ14764 893 aaKnown RBP11.29□□□□□ -0.6
HDAC3-202ENST00000459727 FTSJ3Q8IY81 847 aaKnown RBP11.29□□□□□ -0.6
HDAC3-202ENST00000459727 DDX19BQ9UMR2 479 aa11.29□□□□□ -0.6
HDAC3-202ENST00000459727 A2ML1A8K2U0 1454 aa11.29□□□□□ -0.6
HDAC3-202ENST00000459727 CD163L1Q9NR16 1453 aa11.29□□□□□ -0.6
HDAC3-202ENST00000459727 KNDC1Q76NI1 1749 aa11.29□□□□□ -0.6
HDAC3-202ENST00000459727 PPIP5K1Q6PFW1 1433 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 RIMS2Q9UQ26 1411 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 TSPOAP1O95153 1857 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 EIF5BO60841 1220 aaKnown RBP11.28□□□□□ -0.6
HDAC3-202ENST00000459727 TMPOP42166 694 aaKnown RBP11.28□□□□□ -0.6
HDAC3-202ENST00000459727 LMOD3Q0VAK6 560 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 ALDH1L2Q3SY69 923 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 DZIP1LQ8IYY4 767 aaKnown RBP11.28□□□□□ -0.6
HDAC3-202ENST00000459727 FRAT1Q92837 279 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-202ENST00000459727 PLEKHF1Q96S99 279 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 COG6Q9Y2V7 657 aa11.28□□□□□ -0.6
HDAC3-202ENST00000459727 TECPR2O15040 1411 aa11.27□□□□□ -0.6
HDAC3-202ENST00000459727 CFAP65Q6ZU64 1925 aaKnown RBP11.27□□□□□ -0.6
HDAC3-202ENST00000459727 CDK12Q9NYV4 1490 aaPredicted RBP11.27□□□□□ -0.6
HDAC3-202ENST00000459727 FYB1O15117 783 aa11.27□□□□□ -0.61
HDAC3-202ENST00000459727 RGS3P49796 1198 aa11.27□□□□□ -0.61
HDAC3-202ENST00000459727 BCL11AQ9H165 835 aa11.27□□□□□ -0.61
HDAC3-202ENST00000459727 DMRT2Q9Y5R5 561 aa11.27□□□□□ -0.61
HDAC3-202ENST00000459727 MYO5BQ9ULV0 1848 aa11.27□□□□□ -0.61
HDAC3-202ENST00000459727 AATKQ6ZMQ8 1374 aa11.27□□□□□ -0.61
HDAC3-202ENST00000459727 U2SURPO15042 1029 aaKnown RBP11.26□□□□□ -0.61
HDAC3-202ENST00000459727 HAP1P54257 671 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-202ENST00000459727 BRPF1P55201 1214 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-202ENST00000459727 NEUROD2Q15784 382 aa11.26□□□□□ -0.61
HDAC3-202ENST00000459727 PANK1Q8TE04 598 aa11.26□□□□□ -0.61
HDAC3-202ENST00000459727 STK26Q9P289 416 aa11.26□□□□□ -0.61
HDAC3-202ENST00000459727 RRP7AQ9Y3A4 280 aaKnown RBP11.26□□□□□ -0.61
HDAC3-202ENST00000459727 MINK1Q8N4C8 1332 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-202ENST00000459727 HDAC1Q13547 482 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-202ENST00000459727 CDK19Q9BWU1 502 aa11.25□□□□□ -0.61
HDAC3-202ENST00000459727 SMC4Q9NTJ3 1288 aa11.25□□□□□ -0.61
HDAC3-202ENST00000459727 SETD1AO15047 1707 aaKnown RBP11.25□□□□□ -0.61
HDAC3-202ENST00000459727 CPS1P31327 1500 aa11.25□□□□□ -0.61
HDAC3-202ENST00000459727 IGHDP01880 384 aa11.24□□□□□ -0.61
HDAC3-202ENST00000459727 GGNBP2Q9H3C7 697 aa11.24□□□□□ -0.61
HDAC3-202ENST00000459727 CPSF1Q10570 1443 aaKnown RBP11.24□□□□□ -0.61
HDAC3-202ENST00000459727 NUTM2DQ5VT03 806 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-202ENST00000459727 ATF7IPQ6VMQ6 1270 aa11.23□□□□□ -0.61
HDAC3-202ENST00000459727 ESF1Q9H501 851 aaKnown RBP11.23□□□□□ -0.61
HDAC3-202ENST00000459727 SAFB2Q14151 953 aaKnown RBP eCLIP11.22□□□□□ -0.61
HDAC3-202ENST00000459727 ARHGAP45Q92619 1136 aa11.22□□□□□ -0.61
HDAC3-202ENST00000459727 CFAP44Q96MT7 982 aa11.22□□□□□ -0.61
HDAC3-202ENST00000459727 LRRC7Q96NW7 1537 aa11.22□□□□□ -0.61
HDAC3-202ENST00000459727 ZNF692Q9BU19 519 aaPredicted RBP11.22□□□□□ -0.61
HDAC3-202ENST00000459727 RIPK4P57078 832 aa11.21□□□□□ -0.61
HDAC3-202ENST00000459727 TRIM35Q9UPQ4 493 aa11.21□□□□□ -0.61
HDAC3-202ENST00000459727 KIF24Q5T7B8 1368 aa11.2□□□□□ -0.62
HDAC3-202ENST00000459727 WASLO00401 505 aaPredicted RBP11.2□□□□□ -0.62
HDAC3-202ENST00000459727 GNAI1P63096 354 aa11.2□□□□□ -0.62
HDAC3-202ENST00000459727 EXOSC9Q06265 439 aaKnown RBP11.2□□□□□ -0.62
HDAC3-202ENST00000459727 NFE2L2Q16236 605 aa11.2□□□□□ -0.62
HDAC3-202ENST00000459727 IFT57Q9NWB7 429 aa11.2□□□□□ -0.62
HDAC3-202ENST00000459727 CABP1Q9NZU7 370 aa11.2□□□□□ -0.62
HDAC3-202ENST00000459727 LAS1LQ9Y4W2 734 aaKnown RBP11.2□□□□□ -0.62
HDAC3-202ENST00000459727 MON2Q7Z3U7 1717 aa11.2□□□□□ -0.62
HDAC3-202ENST00000459727 TRIM27P14373 513 aa11.19□□□□□ -0.62
HDAC3-202ENST00000459727 FBXO31Q5XUX0 539 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-202ENST00000459727 RSPH6AQ9H0K4 717 aa11.19□□□□□ -0.62
HDAC3-202ENST00000459727 PDZRN3Q9UPQ7 1066 aa11.19□□□□□ -0.62
HDAC3-202ENST00000459727 PCDHB15Q9Y5E8 787 aa11.19□□□□□ -0.62
HDAC3-202ENST00000459727 NRXN3Q9Y4C0 1643 aa11.19□□□□□ -0.62
HDAC3-202ENST00000459727 PIK3R4Q99570 1358 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 RLBP1P12271 317 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 ITPRIPQ8IWB1 547 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 SMC5Q8IY18 1101 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 COG3Q96JB2 828 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 TBC1D32Q96NH3 1257 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 CCDC61Q9Y6R9 512 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 NRKQ7Z2Y5 1582 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 PTCH1Q13635 1447 aa11.18□□□□□ -0.62
HDAC3-202ENST00000459727 TNRQ92752 1358 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 PRKAR2BP31323 418 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 NFKBIBQ15653 356 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 SSH1Q8WYL5 1049 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 BCL2L13Q9BXK5 485 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 POLKQ9UBT6 870 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 ITSN1Q15811 1721 aa11.17□□□□□ -0.62
HDAC3-202ENST00000459727 GSE1Q14687 1217 aa11.16□□□□□ -0.62
HDAC3-202ENST00000459727 SKAP1Q86WV1 359 aa11.16□□□□□ -0.62
HDAC3-202ENST00000459727 TSR2Q969E8 191 aaKnown RBP11.16□□□□□ -0.62
HDAC3-202ENST00000459727 GCC1Q96CN9 775 aa11.16□□□□□ -0.62
HDAC3-202ENST00000459727 AKAP12Q02952 1782 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms