RNA–Protein interactions for RNA: ENST00000403461.5

CEACAM1-208, Transcript of carcinoembryonic antigen related cell adhesion molecule 1, human

TSL 1 (best) BASIC

Gene CEACAM1, Length 1,263 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CEACAM1-208	ENST00000403461	HECW1	Q76N89	1606 aa		11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	CLIP1	P30622	1438 aa		11.05	□□□□□ -0.64
CEACAM1-208	ENST00000403461	DAXX	Q9UER7	740 aa	Predicted RBP	11.05	□□□□□ -0.64
CEACAM1-208	ENST00000403461	ZNF518A	Q6AHZ1	1483 aa		11.05	□□□□□ -0.64
CEACAM1-208	ENST00000403461	CDK13	Q14004	1512 aa	Known RBP	11.04	□□□□□ -0.64
CEACAM1-208	ENST00000403461	BCAM	P50895	628 aa		11.04	□□□□□ -0.64
CEACAM1-208	ENST00000403461	IFFO2	Q5TF58	517 aa		11.04	□□□□□ -0.64
CEACAM1-208	ENST00000403461	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.04	□□□□□ -0.64
CEACAM1-208	ENST00000403461	UHRF1BP1	Q6BDS2	1440 aa		11.03	□□□□□ -0.64
CEACAM1-208	ENST00000403461		A0A0G2JS52	829 aa		11.02	□□□□□ -0.65
CEACAM1-208	ENST00000403461	HDGF	P51858	240 aa	Known RBP	11.02	□□□□□ -0.65
CEACAM1-208	ENST00000403461	ARHGEF12	Q9NZN5	1544 aa		11.02	□□□□□ -0.65
CEACAM1-208	ENST00000403461	ARHGAP5	Q13017	1502 aa		11.01	□□□□□ -0.65
CEACAM1-208	ENST00000403461	CEBPA	P49715	358 aa	Predicted RBP	11.01	□□□□□ -0.65
CEACAM1-208	ENST00000403461	AFAP1	Q8N556	730 aa		11.01	□□□□□ -0.65
CEACAM1-208	ENST00000403461	ZFR	Q96KR1	1074 aa	Known RBP	11.01	□□□□□ -0.65
CEACAM1-208	ENST00000403461	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.01	□□□□□ -0.65
CEACAM1-208	ENST00000403461	TRO	Q12816	1431 aa	Predicted RBP	11.01	□□□□□ -0.65
CEACAM1-208	ENST00000403461	RGS20	O76081	388 aa		11	□□□□□ -0.65
CEACAM1-208	ENST00000403461	DISP3	Q9P2K9	1392 aa		11	□□□□□ -0.65
CEACAM1-208	ENST00000403461	SOWAHB	A6NEL2	793 aa		10.99	□□□□□ -0.65
CEACAM1-208	ENST00000403461	SSTR3	P32745	418 aa	Predicted RBP	10.99	□□□□□ -0.65
CEACAM1-208	ENST00000403461	SWT1	Q5T5J6	900 aa	Known RBP	10.99	□□□□□ -0.65
CEACAM1-208	ENST00000403461	KIF14	Q15058	1648 aa		10.98	□□□□□ -0.65
CEACAM1-208	ENST00000403461	MS4A1	P11836	297 aa		10.98	□□□□□ -0.65
CEACAM1-208	ENST00000403461	SAMD7	Q7Z3H4	446 aa		10.98	□□□□□ -0.65
CEACAM1-208	ENST00000403461	SULF1	Q8IWU6	871 aa		10.98	□□□□□ -0.65
CEACAM1-208	ENST00000403461	FER1L4	A9Z1Z3	1794 aa		10.98	□□□□□ -0.65
CEACAM1-208	ENST00000403461	ARHGAP35	Q9NRY4	1499 aa		10.96	□□□□□ -0.65
CEACAM1-208	ENST00000403461	SLC4A3	P48751	1232 aa		10.96	□□□□□ -0.65
CEACAM1-208	ENST00000403461	DDRGK1	Q96HY6	314 aa		10.96	□□□□□ -0.65
CEACAM1-208	ENST00000403461	IRX2	Q9BZI1	471 aa	Predicted RBP	10.96	□□□□□ -0.65
CEACAM1-208	ENST00000403461	FAM117A	Q9C073	453 aa		10.96	□□□□□ -0.65
CEACAM1-208	ENST00000403461	WBP1L	Q9NX94	342 aa		10.96	□□□□□ -0.65
CEACAM1-208	ENST00000403461	MLH3	Q9UHC1	1453 aa		10.95	□□□□□ -0.66
CEACAM1-208	ENST00000403461	PTPRT	O14522	1441 aa		10.95	□□□□□ -0.66
CEACAM1-208	ENST00000403461	CNTLN	Q9NXG0	1405 aa		10.95	□□□□□ -0.66
CEACAM1-208	ENST00000403461	DDX11L8	A8MPP1	907 aa		10.95	□□□□□ -0.66
CEACAM1-208	ENST00000403461	PREX1	Q8TCU6	1659 aa		10.95	□□□□□ -0.66
CEACAM1-208	ENST00000403461	KDM5C	P41229	1560 aa		10.94	□□□□□ -0.66
CEACAM1-208	ENST00000403461	TRAPPC8	Q9Y2L5	1435 aa		10.94	□□□□□ -0.66
CEACAM1-208	ENST00000403461	RSPH4A	Q5TD94	716 aa		10.94	□□□□□ -0.66
CEACAM1-208	ENST00000403461	NYAP1	Q6ZVC0	841 aa		10.94	□□□□□ -0.66
CEACAM1-208	ENST00000403461	SLF2	Q8IX21	1173 aa		10.94	□□□□□ -0.66
CEACAM1-208	ENST00000403461	SIGLEC1	Q9BZZ2	1709 aa		10.94	□□□□□ -0.66
CEACAM1-208	ENST00000403461	MYO5C	Q9NQX4	1742 aa		10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	ITGBL1	O95965	494 aa	Predicted RBP	10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	IL27	Q8NEV9	243 aa		10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	LRCH3	Q96II8	777 aa		10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	RERE	Q9P2R6	1566 aa		10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	CCDC18	Q5T9S5	1454 aa		10.93	□□□□□ -0.66
CEACAM1-208	ENST00000403461	SOCS7	O14512	581 aa		10.92	□□□□□ -0.66
CEACAM1-208	ENST00000403461	CD46	P15529	392 aa		10.92	□□□□□ -0.66
CEACAM1-208	ENST00000403461	TMEM132A	Q24JP5	1023 aa		10.92	□□□□□ -0.66
CEACAM1-208	ENST00000403461	BEGAIN	Q9BUH8	593 aa		10.92	□□□□□ -0.66
CEACAM1-208	ENST00000403461	AGL	P35573	1532 aa		10.92	□□□□□ -0.66
CEACAM1-208	ENST00000403461	DIP2C	Q9Y2E4	1556 aa		10.91	□□□□□ -0.66
CEACAM1-208	ENST00000403461	HPS5	Q9UPZ3	1129 aa		10.91	□□□□□ -0.66
CEACAM1-208	ENST00000403461	RDH13	Q8NBN7	331 aa		10.9	□□□□□ -0.66
CEACAM1-208	ENST00000403461	TSR3	Q9UJK0	312 aa	Known RBP	10.9	□□□□□ -0.66
CEACAM1-208	ENST00000403461	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.9	□□□□□ -0.66
CEACAM1-208	ENST00000403461	CASKIN1	Q8WXD9	1431 aa		10.9	□□□□□ -0.66
CEACAM1-208	ENST00000403461	ABCC1	P33527	1531 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	SPAG9	O60271	1321 aa	Known RBP	10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	PLEKHG3	A1L390	1219 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	SLC10A3	P09131	477 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	KCNC4	Q03721	635 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	NECTIN2	Q92692	538 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	NPAT	Q14207	1427 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	NCOA1	Q15788	1441 aa		10.89	□□□□□ -0.67
CEACAM1-208	ENST00000403461	IQSEC2	Q5JU85	1478 aa		10.88	□□□□□ -0.67
CEACAM1-208	ENST00000403461	RNF40	O75150	1001 aa		10.88	□□□□□ -0.67
CEACAM1-208	ENST00000403461	ILDR2	Q71H61	639 aa		10.87	□□□□□ -0.67
CEACAM1-208	ENST00000403461	GCGR	P47871	477 aa		10.86	□□□□□ -0.67
CEACAM1-208	ENST00000403461	ABCA6	Q8N139	1617 aa		10.86	□□□□□ -0.67
CEACAM1-208	ENST00000403461	ZMYM3	Q14202	1370 aa		10.86	□□□□□ -0.67
CEACAM1-208	ENST00000403461	PPP4C	P60510	307 aa		10.85	□□□□□ -0.67
CEACAM1-208	ENST00000403461	DIXDC1	Q155Q3	683 aa		10.85	□□□□□ -0.67
CEACAM1-208	ENST00000403461	RSPH6A	Q9H0K4	717 aa		10.85	□□□□□ -0.67
CEACAM1-208	ENST00000403461	CFDP1	Q9UEE9	299 aa	Predicted RBP	10.85	□□□□□ -0.67
CEACAM1-208	ENST00000403461	PLEKHH2	Q8IVE3	1493 aa		10.85	□□□□□ -0.67
CEACAM1-208	ENST00000403461	PREX2	Q70Z35	1606 aa		10.84	□□□□□ -0.67
CEACAM1-208	ENST00000403461	UBAP1L	F5GYI3	381 aa		10.84	□□□□□ -0.67
CEACAM1-208	ENST00000403461	CCNB3	Q8WWL7	1395 aa		10.84	□□□□□ -0.67
CEACAM1-208	ENST00000403461	FYCO1	Q9BQS8	1478 aa		10.84	□□□□□ -0.67
CEACAM1-208	ENST00000403461	SPATA31D1	Q6ZQQ2	1576 aa		10.84	□□□□□ -0.67
CEACAM1-208	ENST00000403461	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
CEACAM1-208	ENST00000403461	NUTM1	Q86Y26	1132 aa		10.83	□□□□□ -0.68
CEACAM1-208	ENST00000403461	KIAA1107	Q9UPP5	1409 aa		10.83	□□□□□ -0.68
CEACAM1-208	ENST00000403461	STRC	Q7RTU9	1775 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	KDM4A	O75164	1064 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	CFH	P08603	1231 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	GGT6	Q6P531	493 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	SPIRE2	Q8WWL2	714 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	TBC1D2	Q9BYX2	928 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	GOPC	Q9HD26	462 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	CAMSAP1	Q5T5Y3	1602 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	LTBP4	Q8N2S1	1624 aa		10.82	□□□□□ -0.68
CEACAM1-208	ENST00000403461	C3	P01024	1663 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms