RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 RAPGEF6Q8TEU7 1601 aa12.46□□□□□ -0.42
PTCHD4-202ENST00000398738 CLCN1P35523 988 aa12.46□□□□□ -0.42
PTCHD4-202ENST00000398738 ESPNB1AK53 854 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 MORC1Q86VD1 984 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 TSR2Q969E8 191 aaKnown RBP12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 CARD14Q9BXL6 1004 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 KIF13AQ9H1H9 1805 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 ERBB4Q15303 1308 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 MRE11P49959 708 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 ITPRIPQ8IWB1 547 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 CRISPLD2Q9H0B8 497 aa12.45□□□□□ -0.42
PTCHD4-202ENST00000398738 CFAP70Q5T0N1 1121 aa12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 EMILIN3Q9NT22 766 aa12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 PLA2R1Q13018 1463 aa12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 KDM5DQ9BY66 1539 aa12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 FAM135AQ9P2D6 1515 aa12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 FSD2A1L4K1 749 aa12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 HSP90AB1P08238 724 aaKnown RBP12.44□□□□□ -0.42
PTCHD4-202ENST00000398738 DPYSL4O14531 572 aa12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 GALR2O43603 387 aaPredicted RBP12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 ARHGEF1Q92888 912 aaKnown RBP12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 GPRASP1Q5JY77 1395 aa12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 ZBTB7CA1YPR0 619 aa12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 DDX27Q96GQ7 796 aaKnown RBP12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 E9PCH4 1651 aa12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 GAS2L3Q86XJ1 694 aa12.43□□□□□ -0.42
PTCHD4-202ENST00000398738 WDR7Q9Y4E6 1490 aa12.42□□□□□ -0.42
PTCHD4-202ENST00000398738 LNPKQ9C0E8 428 aa12.42□□□□□ -0.42
PTCHD4-202ENST00000398738 ZCCHC11Q5TAX3 1644 aaKnown RBP12.42□□□□□ -0.42
PTCHD4-202ENST00000398738 NCLP19338 710 aaKnown RBP12.42□□□□□ -0.42
PTCHD4-202ENST00000398738 SMC4Q9NTJ3 1288 aa12.42□□□□□ -0.42
PTCHD4-202ENST00000398738 PTPRGP23470 1445 aa12.42□□□□□ -0.42
PTCHD4-202ENST00000398738 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
PTCHD4-202ENST00000398738 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.42
PTCHD4-202ENST00000398738 RBM10P98175 930 aaKnown RBP12.41□□□□□ -0.42
PTCHD4-202ENST00000398738 CYB5RLQ6IPT4 315 aa12.41□□□□□ -0.42
PTCHD4-202ENST00000398738 SLC12A5Q9H2X9 1139 aa12.4□□□□□ -0.42
PTCHD4-202ENST00000398738 INSRP06213 1382 aa12.4□□□□□ -0.42
PTCHD4-202ENST00000398738 TNPO1Q92973 898 aaKnown RBP12.4□□□□□ -0.42
PTCHD4-202ENST00000398738 U2SURPO15042 1029 aaKnown RBP12.39□□□□□ -0.43
PTCHD4-202ENST00000398738 DZIP1LQ8IYY4 767 aaKnown RBP12.39□□□□□ -0.43
PTCHD4-202ENST00000398738 MTHFSP49914 203 aa12.39□□□□□ -0.43
PTCHD4-202ENST00000398738 ADGBQ8N7X0 1667 aa12.39□□□□□ -0.43
PTCHD4-202ENST00000398738 TRAK1Q9UPV9 953 aa12.39□□□□□ -0.43
PTCHD4-202ENST00000398738 GLI2P10070 1586 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 DDX11L8A8MPP1 907 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 RRP9O43818 475 aaKnown RBP12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 MVPQ14764 893 aaKnown RBP12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 ZKSCAN2Q63HK3 967 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 RUNDC1Q96C34 613 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 NLRP1Q9C000 1473 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 TRPM1Q7Z4N2 1603 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 TTLL13PA6NNM8 815 aa12.38□□□□□ -0.43
PTCHD4-202ENST00000398738 DSG2Q14126 1118 aa12.37□□□□□ -0.43
PTCHD4-202ENST00000398738 SAFB2Q14151 953 aaKnown RBP eCLIP12.37□□□□□ -0.43
PTCHD4-202ENST00000398738 C14orf37Q86TY3 774 aa12.37□□□□□ -0.43
PTCHD4-202ENST00000398738 DIP2BQ9P265 1576 aa12.37□□□□□ -0.43
PTCHD4-202ENST00000398738 ATP10BO94823 1461 aa12.37□□□□□ -0.43
PTCHD4-202ENST00000398738 EXOSC9Q06265 439 aaKnown RBP12.37□□□□□ -0.43
PTCHD4-202ENST00000398738 KIAA1211Q6ZU35 1233 aa12.36□□□□□ -0.43
PTCHD4-202ENST00000398738 ASXL1Q8IXJ9 1541 aa12.36□□□□□ -0.43
PTCHD4-202ENST00000398738 TRIM35Q9UPQ4 493 aa12.36□□□□□ -0.43
PTCHD4-202ENST00000398738 SOX12O15370 315 aa12.35□□□□□ -0.43
PTCHD4-202ENST00000398738 ITSN2Q9NZM3 1697 aa12.35□□□□□ -0.43
PTCHD4-202ENST00000398738 PIK3C2GO75747 1445 aa12.35□□□□□ -0.43
PTCHD4-202ENST00000398738 GBP4Q96PP9 640 aa12.35□□□□□ -0.43
PTCHD4-202ENST00000398738 C1orf115Q9H7X2 142 aa12.35□□□□□ -0.43
PTCHD4-202ENST00000398738 TRIM27P14373 513 aa12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 NUTM2DQ5VT03 806 aaPredicted RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 ANP32BQ92688 251 aaKnown RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 FAM13BQ9NYF5 915 aa12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 PRDM15P57071 1507 aaPredicted RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 CD2BP2O95400 341 aaKnown RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 BMP2KQ9NSY1 1161 aaPredicted RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 NOB1Q9ULX3 412 aaKnown RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 DDX49Q9Y6V7 483 aaKnown RBP12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 CCDC141Q6ZP82 1450 aa12.34□□□□□ -0.43
PTCHD4-202ENST00000398738 SSFA2P28290 1259 aa12.33□□□□□ -0.43
PTCHD4-202ENST00000398738 TMEM132EQ6IEE7 984 aa12.33□□□□□ -0.43
PTCHD4-202ENST00000398738 SSH1Q8WYL5 1049 aa12.33□□□□□ -0.43
PTCHD4-202ENST00000398738 ANKRD45Q5TZF3 282 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 TMEM57Q8N5G2 664 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.33□□□□□ -0.447e-6■■□□□ 12.8
PTCHD4-202ENST00000398738 ABCC10Q5T3U5 1492 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 PPRC1Q5VV67 1664 aaKnown RBP12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 MAP3K4Q9Y6R4 1608 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 ZMYND10O75800 440 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 RSPH4AQ5TD94 716 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 AFAP1Q8N556 730 aa12.33□□□□□ -0.44
PTCHD4-202ENST00000398738 NASPP49321 788 aaPredicted RBP12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 FOXD4L5Q5VV16 416 aaPredicted RBP12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 FOXD4L4Q8WXT5 416 aaPredicted RBP12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 ELL2O00472 640 aaPredicted RBP12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 CFAP53Q96M91 514 aa12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 ADGRF5Q8IZF2 1346 aa12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 MSNP26038 577 aaKnown RBP12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 R3HCC1Q9Y3T6 440 aaKnown RBP12.32□□□□□ -0.44
PTCHD4-202ENST00000398738 SHANK2Q9UPX8 1470 aa12.31□□□□□ -0.44
PTCHD4-202ENST00000398738 UPF1Q92900 1129 aaKnown RBP eCLIP12.31□□□□□ -0.44
PTCHD4-202ENST00000398738 PPP1R15BQ5SWA1 713 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms