RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CABP1Q9NZU7 370 aa14.49□□□□□ -0.09
CUX1-204ENST00000393824 STRCP1A6NGW2 1772 aa14.49□□□□□ -0.09
CUX1-204ENST00000393824 CD163L1Q9NR16 1453 aa14.48□□□□□ -0.09
CUX1-204ENST00000393824 GLIPR1L2Q4G1C9 344 aa14.48□□□□□ -0.09
CUX1-204ENST00000393824 CC2D1BQ5T0F9 858 aaKnown RBP14.48□□□□□ -0.09
CUX1-204ENST00000393824 ZNF335Q9H4Z2 1342 aaPredicted RBP14.47□□□□□ -0.09
CUX1-204ENST00000393824 NUDT16Q96DE0 195 aaKnown RBP14.47□□□□□ -0.09
CUX1-204ENST00000393824 ATP7BP35670 1465 aa14.46□□□□□ -0.09
CUX1-204ENST00000393824 A0A1W2PP64 1363 aa14.46□□□□□ -0.09
CUX1-204ENST00000393824 AMER1Q5JTC6 1135 aaPredicted RBP14.46□□□□□ -0.09
CUX1-204ENST00000393824 NWD1Q149M9 1564 aa14.45□□□□□ -0.1
CUX1-204ENST00000393824 NALCNQ8IZF0 1738 aa14.45□□□□□ -0.1
CUX1-204ENST00000393824 ADGRB2O60241 1585 aa14.45□□□□□ -0.1
CUX1-204ENST00000393824 ATAD2Q6PL18 1390 aa14.44□□□□□ -0.1
CUX1-204ENST00000393824 NLRP13Q86W25 1043 aa14.44□□□□□ -0.1
CUX1-204ENST00000393824 PUS7Q96PZ0 661 aaKnown RBP14.44□□□□□ -0.1
CUX1-204ENST00000393824 NSD3Q9BZ95 1437 aa14.44□□□□□ -0.1
CUX1-204ENST00000393824 PROSER2Q86WR7 435 aaPredicted RBP14.43□□□□□ -0.1
CUX1-204ENST00000393824 USP32Q8NFA0 1604 aa14.43□□□□□ -0.1
CUX1-204ENST00000393824 PPIP5K1Q6PFW1 1433 aa14.43□□□□□ -0.1
CUX1-204ENST00000393824 TMEM94Q12767 1356 aa14.43□□□□□ -0.1
CUX1-204ENST00000393824 KNSTRNQ9Y448 316 aa14.42□□□□□ -0.1
CUX1-204ENST00000393824 ANKRD36BQ8N2N9 1353 aa14.42□□□□□ -0.1
CUX1-204ENST00000393824 PARD3Q8TEW0 1356 aa14.42□□□□□ -0.1
CUX1-204ENST00000393824 NKTRP30414 1462 aaKnown RBP14.42□□□□□ -0.1
CUX1-204ENST00000393824 CCDC61Q9Y6R9 512 aa14.42□□□□□ -0.1
CUX1-204ENST00000393824 SENP3-EIF4A1A0A087X0R7 540 aa14.41□□□□□ -0.1
CUX1-204ENST00000393824 PMFBP1Q8TBY8 1022 aa14.41□□□□□ -0.1
CUX1-204ENST00000393824 C14orf37Q86TY3 774 aa14.41□□□□□ -0.1
CUX1-204ENST00000393824 ADGRL3Q9HAR2 1447 aa14.41□□□□□ -0.1
CUX1-204ENST00000393824 SLC4A3P48751 1232 aa14.4□□□□□ -0.11
CUX1-204ENST00000393824 ZMYND15Q9H091 742 aa14.4□□□□□ -0.11
CUX1-204ENST00000393824 RGPD8O14715 1765 aaPredicted RBP14.39□□□□□ -0.11
CUX1-204ENST00000393824 FRAT2O75474 233 aaPredicted RBP14.38□□□□□ -0.11
CUX1-204ENST00000393824 CPSF1Q10570 1443 aaKnown RBP14.38□□□□□ -0.11
CUX1-204ENST00000393824 ACEP12821 1306 aa14.37□□□□□ -0.11
CUX1-204ENST00000393824 KDM2BQ8NHM5 1336 aa14.37□□□□□ -0.11
CUX1-204ENST00000393824 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.37□□□□□ -0.113e-6■□□□□ 10.3
CUX1-204ENST00000393824 ZRANB1Q9UGI0 708 aa14.37□□□□□ -0.11
CUX1-204ENST00000393824 NINLQ9Y2I6 1382 aa14.37□□□□□ -0.11
CUX1-204ENST00000393824 FAM161AQ3B820 660 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 ORAI2Q96SN7 254 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 GGNBP2Q9H3C7 697 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 CDC42BPGQ6DT37 1551 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 TOPAZ1Q8N9V7 1692 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 FBLN1P23142 703 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 TNNT2P45379 298 aaPredicted RBP14.36□□□□□ -0.11
CUX1-204ENST00000393824 CRBNQ96SW2 442 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 TERF2IPQ9NYB0 399 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 LRRC7Q96NW7 1537 aa14.36□□□□□ -0.11
CUX1-204ENST00000393824 FMN2Q9NZ56 1722 aa14.35□□□□□ -0.11
CUX1-204ENST00000393824 BLMP54132 1417 aaPredicted RBP14.35□□□□□ -0.11
CUX1-204ENST00000393824 FYB1O15117 783 aa14.35□□□□□ -0.11
CUX1-204ENST00000393824 PLEKHG3A1L390 1219 aa14.35□□□□□ -0.11
CUX1-204ENST00000393824 C8orf34Q49A92 452 aa14.35□□□□□ -0.11
CUX1-204ENST00000393824 C19orf44Q9H6X5 657 aa14.35□□□□□ -0.11
CUX1-204ENST00000393824 CENPQQ7L2Z9 268 aaPredicted RBP14.34□□□□□ -0.11
CUX1-204ENST00000393824 SKAP1Q86WV1 359 aa14.34□□□□□ -0.11
CUX1-204ENST00000393824 XIRP1Q702N8 1843 aaKnown RBP14.34□□□□□ -0.11
CUX1-204ENST00000393824 NME9Q86XW9 330 aa14.33□□□□□ -0.11
CUX1-204ENST00000393824 HDGFL2Q7Z4V5 671 aaPredicted RBP14.33□□□□□ -0.12
CUX1-204ENST00000393824 PLIN1O60240 522 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 ESCO1Q5FWF5 840 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 VSIG10Q8N0Z9 540 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 CDCA7LQ96GN5 454 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 CGNL1Q0VF96 1302 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 NPC1L1Q9UHC9 1359 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 PPP2R1AP30153 589 aa14.32□□□□□ -0.12
CUX1-204ENST00000393824 DDX17Q92841 729 aaKnown RBP14.32□□□□□ -0.12
CUX1-204ENST00000393824 XPCQ01831 940 aaPredicted RBP14.31□□□□□ -0.12
CUX1-204ENST00000393824 ANKARQ7Z5J8 1434 aa14.31□□□□□ -0.12
CUX1-204ENST00000393824 POLR3AO14802 1390 aaPredicted RBP14.3□□□□□ -0.12
CUX1-204ENST00000393824 USP6P35125 1406 aa14.3□□□□□ -0.12
CUX1-204ENST00000393824 NGDNQ8NEJ9 315 aaKnown RBP14.3□□□□□ -0.12
CUX1-204ENST00000393824 MST1RQ04912 1400 aa14.3□□□□□ -0.12
CUX1-204ENST00000393824 C1orf167Q5SNV9 1468 aa14.3□□□□□ -0.12
CUX1-204ENST00000393824 PHF8Q9UPP1 1060 aa14.3□□□□□ -0.12
CUX1-204ENST00000393824 DMRT2Q9Y5R5 561 aa14.3□□□□□ -0.12
CUX1-204ENST00000393824 SSH2Q76I76 1423 aa14.29□□□□□ -0.12
CUX1-204ENST00000393824 FOXO3O43524 673 aa14.29□□□□□ -0.12
CUX1-204ENST00000393824 RRAGDQ9NQL2 400 aaPredicted RBP14.29□□□□□ -0.12
CUX1-204ENST00000393824 EDC4Q6P2E9 1401 aaKnown RBP14.29□□□□□ -0.12
CUX1-204ENST00000393824 MORC1Q86VD1 984 aa14.29□□□□□ -0.12
CUX1-204ENST00000393824 MON2Q7Z3U7 1717 aa14.28□□□□□ -0.12
CUX1-204ENST00000393824 AKAP12Q02952 1782 aa14.28□□□□□ -0.12
CUX1-204ENST00000393824 ATF3P18847 181 aa14.28□□□□□ -0.12
CUX1-204ENST00000393824 L1TD1Q5T7N2 865 aaKnown RBP14.28□□□□□ -0.12
CUX1-204ENST00000393824 TTC21BQ7Z4L5 1316 aa14.28□□□□□ -0.12
CUX1-204ENST00000393824 NRKQ7Z2Y5 1582 aa14.27□□□□□ -0.12
CUX1-204ENST00000393824 NUTM2GQ5VZR2 741 aa14.27□□□□□ -0.13
CUX1-204ENST00000393824 AEBP2Q6ZN18 517 aaPredicted RBP14.27□□□□□ -0.13
CUX1-204ENST00000393824 MSH6P52701 1360 aa14.26□□□□□ -0.13
CUX1-204ENST00000393824 ZNF692Q9BU19 519 aaPredicted RBP14.26□□□□□ -0.13
CUX1-204ENST00000393824 ITSN1Q15811 1721 aa14.26□□□□□ -0.13
CUX1-204ENST00000393824 LTBP4Q8N2S1 1624 aa14.26□□□□□ -0.13
CUX1-204ENST00000393824 NCOA3Q9Y6Q9 1424 aa14.25□□□□□ -0.13
CUX1-204ENST00000393824 C20orf194Q5TEA3 1177 aa14.25□□□□□ -0.13
CUX1-204ENST00000393824 CADPS2Q86UW7 1296 aa14.24□□□□□ -0.13
CUX1-204ENST00000393824 DCCP43146 1447 aa14.24□□□□□ -0.13
CUX1-204ENST00000393824 SOX12O15370 315 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms