RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 CCDC141Q6ZP82 1450 aa11.53□□□□□ -0.56
PTPRA-204ENST00000380393 KIAA2012Q0VF49 1180 aa11.53□□□□□ -0.56
PTPRA-204ENST00000380393 CCDC39Q9UFE4 941 aa11.53□□□□□ -0.56
PTPRA-204ENST00000380393 KDM2AQ9Y2K7 1162 aa11.52□□□□□ -0.56
PTPRA-204ENST00000380393 CEP83Q9Y592 693 aa11.52□□□□□ -0.57
PTPRA-204ENST00000380393 ABCA9Q8IUA7 1624 aa11.52□□□□□ -0.57
PTPRA-204ENST00000380393 ANKRD50Q9ULJ7 1429 aa11.52□□□□□ -0.57
PTPRA-204ENST00000380393 ZNF592Q92610 1267 aa11.52□□□□□ -0.57
PTPRA-204ENST00000380393 SMC4Q9NTJ3 1288 aa11.52□□□□□ -0.57
PTPRA-204ENST00000380393 RBM25P49756 843 aaKnown RBP11.51□□□□□ -0.57
PTPRA-204ENST00000380393 PDLIM2Q96JY6 352 aa11.51□□□□□ -0.57
PTPRA-204ENST00000380393 NCAPGQ9BPX3 1015 aa11.51□□□□□ -0.57
PTPRA-204ENST00000380393 GPATCH11Q8N954 259 aa11.5□□□□□ -0.57
PTPRA-204ENST00000380393 TERF2Q15554 542 aa11.5□□□□□ -0.57
PTPRA-204ENST00000380393 MFAP1P55081 439 aaKnown RBP11.5□□□□□ -0.57
PTPRA-204ENST00000380393 MPNDQ8N594 471 aa11.5□□□□□ -0.57
PTPRA-204ENST00000380393 CFAP44Q96MT7 982 aa11.5□□□□□ -0.57
PTPRA-204ENST00000380393 VIRMAQ69YN4 1812 aaKnown RBP11.5□□□□□ -0.57
PTPRA-204ENST00000380393 NUP155O75694 1391 aa11.5□□□□□ -0.57
PTPRA-204ENST00000380393 ROCK1Q13464 1354 aa11.5□□□□□ -0.57
PTPRA-204ENST00000380393 BRPF1P55201 1214 aaPredicted RBP11.49□□□□□ -0.57
PTPRA-204ENST00000380393 TNPO1Q92973 898 aaKnown RBP11.49□□□□□ -0.57
PTPRA-204ENST00000380393 TBC1D32Q96NH3 1257 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 PLEKHH2Q8IVE3 1493 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 CEP120Q8N960 986 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 ABCC1P33527 1531 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 IRF6O14896 467 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 PDE3BQ13370 1112 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 PKD2Q13563 968 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 HSP90AB3PQ58FF7 597 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 TAOK2Q9UL54 1235 aa11.49□□□□□ -0.57
PTPRA-204ENST00000380393 GOLIM4O00461 696 aa11.48□□□□□ -0.57
PTPRA-204ENST00000380393 CCDC172P0C7W6 258 aa11.48□□□□□ -0.57
PTPRA-204ENST00000380393 OS9Q13438 667 aaPredicted RBP11.48□□□□□ -0.57
PTPRA-204ENST00000380393 KIF3BO15066 747 aa11.48□□□□□ -0.57
PTPRA-204ENST00000380393 DENND4BO75064 1496 aaPredicted RBP11.48□□□□□ -0.57
PTPRA-204ENST00000380393 SATB1Q01826 763 aa11.48□□□□□ -0.57
PTPRA-204ENST00000380393 KIAA1107Q9UPP5 1409 aa11.48□□□□□ -0.57
PTPRA-204ENST00000380393 NLRP1Q9C000 1473 aa11.48□□□□□ -0.57
PTPRA-204ENST00000380393 DHX16O60231 1041 aaKnown RBP11.47□□□□□ -0.57
PTPRA-204ENST00000380393 CLSTN1O94985 981 aa11.47□□□□□ -0.57
PTPRA-204ENST00000380393 TOMM22Q9NS69 142 aa11.47□□□□□ -0.57
PTPRA-204ENST00000380393 NOP2P46087 812 aaKnown RBP11.47□□□□□ -0.57
PTPRA-204ENST00000380393 STK26Q9P289 416 aa11.47□□□□□ -0.57
PTPRA-204ENST00000380393 DDX49Q9Y6V7 483 aaKnown RBP11.47□□□□□ -0.57
PTPRA-204ENST00000380393 NBPF20Q3BBV1 942 aa11.46□□□□□ -0.57
PTPRA-204ENST00000380393 ICE2Q659A1 982 aa11.46□□□□□ -0.57
PTPRA-204ENST00000380393 GGT6Q6P531 493 aa11.46□□□□□ -0.57
PTPRA-204ENST00000380393 SEMA3FQ13275 785 aa11.46□□□□□ -0.58
PTPRA-204ENST00000380393 CARD11Q9BXL7 1154 aa11.46□□□□□ -0.58
PTPRA-204ENST00000380393 TNNT1P13805 278 aa11.46□□□□□ -0.58
PTPRA-204ENST00000380393 DIP2BQ9P265 1576 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 CROCC2H7BZ55 1655 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 GOLGA6L22H0YM25 854 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 HSP90AB1P08238 724 aaKnown RBP11.45□□□□□ -0.58
PTPRA-204ENST00000380393 RAD51AP2Q09MP3 1159 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 HSCBQ8IWL3 235 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 RBSNQ9H1K0 784 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 SH3BP1Q9Y3L3 701 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 ANKRD7Q92527 254 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 RASSF4Q9H2L5 321 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 ARHGEF5Q12774 1597 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 CTR9Q6PD62 1173 aa11.45□□□□□ -0.58
PTPRA-204ENST00000380393 ADGRL2O95490 1459 aa11.44□□□□□ -0.58
PTPRA-204ENST00000380393 DHX29Q7Z478 1369 aaKnown RBP11.44□□□□□ -0.58
PTPRA-204ENST00000380393 USP47Q96K76 1375 aa11.44□□□□□ -0.58
PTPRA-204ENST00000380393 IBTKQ9P2D0 1353 aaPredicted RBP11.44□□□□□ -0.58
PTPRA-204ENST00000380393 ZNF692Q9BU19 519 aaPredicted RBP11.44□□□□□ -0.58
PTPRA-204ENST00000380393 COL17A1Q9UMD9 1497 aaPredicted RBP11.44□□□□□ -0.58
PTPRA-204ENST00000380393 RNF217Q8TC41 542 aa11.43□□□□□ -0.58
PTPRA-204ENST00000380393 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.43□□□□□ -0.583e-6■■□□□ 11.9
PTPRA-204ENST00000380393 GCC2Q8IWJ2 1684 aa11.43□□□□□ -0.58
PTPRA-204ENST00000380393 HNRNPH2P55795 449 aaKnown RBP11.43□□□□□ -0.58
PTPRA-204ENST00000380393 SLC26A8Q96RN1 970 aa11.43□□□□□ -0.58
PTPRA-204ENST00000380393 MAPK8IP3Q9UPT6 1336 aa11.43□□□□□ -0.58
PTPRA-204ENST00000380393 YEATS2Q9ULM3 1422 aa11.42□□□□□ -0.58
PTPRA-204ENST00000380393 SHANK2Q9UPX8 1470 aa11.42□□□□□ -0.58
PTPRA-204ENST00000380393 MAP2K1Q02750 393 aaPredicted RBP11.42□□□□□ -0.58
PTPRA-204ENST00000380393 NOLC1Q14978 699 aaKnown RBP eCLIP11.42□□□□□ -0.58
PTPRA-204ENST00000380393 KLHL40Q2TBA0 621 aa11.42□□□□□ -0.58
PTPRA-204ENST00000380393 MYBBP1AQ9BQG0 1328 aaKnown RBP11.42□□□□□ -0.58
PTPRA-204ENST00000380393 ST20-MTHFSA0A0A6YYL1 179 aa11.42□□□□□ -0.58
PTPRA-204ENST00000380393 ZNF445P59923 1031 aa11.42□□□□□ -0.58
PTPRA-204ENST00000380393 CHAF1AQ13111 956 aaPredicted RBP11.42□□□□□ -0.58
PTPRA-204ENST00000380393 PZPP20742 1482 aa11.42□□□□□ -0.58
PTPRA-204ENST00000380393 SRPK2P78362 688 aaKnown RBP11.41□□□□□ -0.58
PTPRA-204ENST00000380393 SPINK5Q9NQ38 1064 aaPredicted RBP11.41□□□□□ -0.58
PTPRA-204ENST00000380393 CTNNA3Q9UI47 895 aa11.41□□□□□ -0.58
PTPRA-204ENST00000380393 DDX41Q9UJV9 622 aaKnown RBP11.41□□□□□ -0.58
PTPRA-204ENST00000380393 GUCY2CP25092 1073 aa11.41□□□□□ -0.58
PTPRA-204ENST00000380393 POGZQ7Z3K3 1410 aa11.41□□□□□ -0.58
PTPRA-204ENST00000380393 TDO2P48775 406 aa11.41□□□□□ -0.58
PTPRA-204ENST00000380393 SENP3Q9H4L4 574 aaPredicted RBP11.41□□□□□ -0.58
PTPRA-204ENST00000380393 BRMS1Q9HCU9 246 aa11.41□□□□□ -0.58
PTPRA-204ENST00000380393 ADGBQ8N7X0 1667 aa11.41□□□□□ -0.58
PTPRA-204ENST00000380393 GYS2P54840 703 aa11.4□□□□□ -0.58
PTPRA-204ENST00000380393 CAVIN1Q6NZI2 390 aaKnown RBP11.4□□□□□ -0.58
PTPRA-204ENST00000380393 DIAPH3Q9NSV4 1193 aa11.4□□□□□ -0.58
PTPRA-204ENST00000380393 RIOK3O14730 519 aaKnown RBP11.4□□□□□ -0.58
PTPRA-204ENST00000380393 KRT222Q8N1A0 295 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms