RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 NISCHQ9Y2I1 1504 aa17.79■□□□□ 0.44
PTPRA-204ENST00000380393 PELP1Q8IZL8 1130 aaKnown RBP16.72■□□□□ 0.27
PTPRA-204ENST00000380393 MYT1Q01538 1121 aa16.37■□□□□ 0.21
PTPRA-204ENST00000380393 HRCP23327 699 aa15.83■□□□□ 0.13
PTPRA-204ENST00000380393 TTBK1Q5TCY1 1321 aaPredicted RBP15.62■□□□□ 0.09
PTPRA-204ENST00000380393 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
PTPRA-204ENST00000380393 PPARGC1BQ86YN6 1023 aaKnown RBP15.5■□□□□ 0.07
PTPRA-204ENST00000380393 PRKCSHP14314 528 aaPredicted RBP15.35■□□□□ 0.05
PTPRA-204ENST00000380393 CCDC180Q9P1Z9 1646 aa15.32■□□□□ 0.04
PTPRA-204ENST00000380393 DCAF8L2P0C7V8 631 aa15.23■□□□□ 0.03
PTPRA-204ENST00000380393 BCL11AQ9H165 835 aa15.19■□□□□ 0.02
PTPRA-204ENST00000380393 PCGF6Q9BYE7 350 aa15.1■□□□□ 0.01
PTPRA-204ENST00000380393 ABCC9O60706 1549 aa15.04■□□□□ -0
PTPRA-204ENST00000380393 FAM9AQ8IZU1 332 aaPredicted RBP15.02■□□□□ -0
PTPRA-204ENST00000380393 ERICH6Q7L0X2 663 aa14.98□□□□□ -0.01
PTPRA-204ENST00000380393 SHROOM4Q9ULL8 1493 aa14.91□□□□□ -0.02
PTPRA-204ENST00000380393 CENPBP07199 599 aaPredicted RBP14.89□□□□□ -0.03
PTPRA-204ENST00000380393 ZCCHC6Q5VYS8 1495 aaKnown RBP14.89□□□□□ -0.03
PTPRA-204ENST00000380393 ACIN1Q9UKV3 1341 aaKnown RBP14.85□□□□□ -0.03
PTPRA-204ENST00000380393 APLP2Q06481 763 aa14.83□□□□□ -0.04
PTPRA-204ENST00000380393 GTF3C3Q9Y5Q9 886 aa14.81□□□□□ -0.04
PTPRA-204ENST00000380393 NEUROD1Q13562 356 aa14.76□□□□□ -0.05
PTPRA-204ENST00000380393 SUPT5HO00267 1087 aaKnown RBP14.75□□□□□ -0.05
PTPRA-204ENST00000380393 ZEB1P37275 1124 aaPredicted RBP14.59□□□□□ -0.07
PTPRA-204ENST00000380393 ANP32EQ9BTT0 268 aa14.54□□□□□ -0.08
PTPRA-204ENST00000380393 MYO15BQ96JP2 1530 aa14.5□□□□□ -0.09
PTPRA-204ENST00000380393 DCAF1Q9Y4B6 1507 aa14.48□□□□□ -0.09
PTPRA-204ENST00000380393 SLC24A1O60721 1099 aa14.43□□□□□ -0.1
PTPRA-204ENST00000380393 SCRIBQ14160 1630 aa14.43□□□□□ -0.1
PTPRA-204ENST00000380393 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
PTPRA-204ENST00000380393 NACADO15069 1562 aa14.38□□□□□ -0.11
PTPRA-204ENST00000380393 RB1CC1Q8TDY2 1594 aa14.32□□□□□ -0.12
PTPRA-204ENST00000380393 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.121e-6■■■■□ 22.8
PTPRA-204ENST00000380393 TRIM26Q12899 539 aaPredicted RBP14.31□□□□□ -0.12
PTPRA-204ENST00000380393 CHIC1Q5VXU3 224 aa14.25□□□□□ -0.13
PTPRA-204ENST00000380393 ANO8Q9HCE9 1232 aaPredicted RBP14.15□□□□□ -0.14
PTPRA-204ENST00000380393 LOC105371045A0A1W2PR82 267 aa14.14□□□□□ -0.15
PTPRA-204ENST00000380393 DIEXFQ68CQ4 756 aaKnown RBP14.11□□□□□ -0.15
PTPRA-204ENST00000380393 EIF5BO60841 1220 aaKnown RBP14.09□□□□□ -0.15
PTPRA-204ENST00000380393 UNC13AQ9UPW8 1703 aa14.09□□□□□ -0.15
PTPRA-204ENST00000380393 YTHDC1Q96MU7 727 aaKnown RBP14.07□□□□□ -0.16
PTPRA-204ENST00000380393 CECR2Q9BXF3 1484 aa14.03□□□□□ -0.16
PTPRA-204ENST00000380393 TSHZ2Q9NRE2 1034 aa14.03□□□□□ -0.16
PTPRA-204ENST00000380393 BICRAQ9NZM4 1560 aa13.99□□□□□ -0.17
PTPRA-204ENST00000380393 UBE2Q2Q8WVN8 375 aa13.98□□□□□ -0.17
PTPRA-204ENST00000380393 DAXXQ9UER7 740 aaPredicted RBP13.97□□□□□ -0.17
PTPRA-204ENST00000380393 EHMT2Q96KQ7 1210 aa13.89□□□□□ -0.19
PTPRA-204ENST00000380393 RSF1Q96T23 1441 aaPredicted RBP13.87□□□□□ -0.19
PTPRA-204ENST00000380393 SALL2Q9Y467 1007 aaPredicted RBP13.86□□□□□ -0.19
PTPRA-204ENST00000380393 CCDC136Q96JN2 1154 aa13.86□□□□□ -0.19
PTPRA-204ENST00000380393 MROH2BQ7Z745 1585 aa13.86□□□□□ -0.19
PTPRA-204ENST00000380393 PLEKHG5O94827 1062 aa13.84□□□□□ -0.19
PTPRA-204ENST00000380393 SUPT16HQ9Y5B9 1047 aaKnown RBP13.83□□□□□ -0.19
PTPRA-204ENST00000380393 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
PTPRA-204ENST00000380393 WIZO95785 1651 aa13.73□□□□□ -0.21
PTPRA-204ENST00000380393 PKNOX2Q96KN3 472 aa13.73□□□□□ -0.21
PTPRA-204ENST00000380393 CCER1Q8TC90 406 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-204ENST00000380393 BAZ1AQ9NRL2 1556 aaPredicted RBP13.69□□□□□ -0.22
PTPRA-204ENST00000380393 TRIM41Q8WV44 630 aa13.69□□□□□ -0.22
PTPRA-204ENST00000380393 PODXL2Q9NZ53 605 aa13.68□□□□□ -0.22
PTPRA-204ENST00000380393 SMARCA4P51532 1647 aa13.67□□□□□ -0.22
PTPRA-204ENST00000380393 DEKP35659 375 aaKnown RBP13.67□□□□□ -0.22
PTPRA-204ENST00000380393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.66□□□□□ -0.22
PTPRA-204ENST00000380393 ERICH6BQ5W0A0 696 aa13.66□□□□□ -0.22
PTPRA-204ENST00000380393 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.64□□□□□ -0.23
PTPRA-204ENST00000380393 MIER1Q8N108 512 aa13.64□□□□□ -0.23
PTPRA-204ENST00000380393 MYT1LQ9UL68 1186 aa13.64□□□□□ -0.23
PTPRA-204ENST00000380393 RBM19Q9Y4C8 960 aaKnown RBP13.62□□□□□ -0.23
PTPRA-204ENST00000380393 EIF4G1Q04637 1599 aaKnown RBP13.58□□□□□ -0.24
PTPRA-204ENST00000380393 ZNF316A6NFI3 1004 aaPredicted RBP13.58□□□□□ -0.24
PTPRA-204ENST00000380393 MSH5O43196 834 aa13.57□□□□□ -0.24
PTPRA-204ENST00000380393 DNAJC5BQ9UF47 199 aa13.54□□□□□ -0.24
PTPRA-204ENST00000380393 ATAD2BQ9ULI0 1458 aa13.54□□□□□ -0.24
PTPRA-204ENST00000380393 BCANQ96GW7 911 aa13.5□□□□□ -0.25
PTPRA-204ENST00000380393 RTN4Q9NQC3 1192 aaKnown RBP13.46□□□□□ -0.25
PTPRA-204ENST00000380393 BAZ1BQ9UIG0 1483 aaKnown RBP13.46□□□□□ -0.25
PTPRA-204ENST00000380393 CCDC88BA6NC98 1476 aa13.44□□□□□ -0.26
PTPRA-204ENST00000380393 CC2D2AQ9P2K1 1620 aa13.44□□□□□ -0.26
PTPRA-204ENST00000380393 TOP2AP11388 1531 aaKnown RBP13.43□□□□□ -0.26
PTPRA-204ENST00000380393 IL27Q8NEV9 243 aa13.4□□□□□ -0.26
PTPRA-204ENST00000380393 SMARCA2P51531 1590 aa13.4□□□□□ -0.26
PTPRA-204ENST00000380393 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
PTPRA-204ENST00000380393 NCAPD3P42695 1498 aa13.36□□□□□ -0.27
PTPRA-204ENST00000380393 FANCIQ9NVI1 1328 aa13.34□□□□□ -0.27
PTPRA-204ENST00000380393 FKBP8Q14318 412 aa13.31□□□□□ -0.28
PTPRA-204ENST00000380393 NBR1Q14596 966 aa13.28□□□□□ -0.28
PTPRA-204ENST00000380393 NEFLP07196 543 aa13.27□□□□□ -0.29
PTPRA-204ENST00000380393 ITGAEP38570 1179 aa13.26□□□□□ -0.29
PTPRA-204ENST00000380393 HMGXB3Q12766 1538 aa13.24□□□□□ -0.29
PTPRA-204ENST00000380393 ABCC8Q09428 1581 aa13.23□□□□□ -0.29
PTPRA-204ENST00000380393 GLIPR1L2Q4G1C9 344 aa13.23□□□□□ -0.29
PTPRA-204ENST00000380393 ZMYND15Q9H091 742 aa13.21□□□□□ -0.29
PTPRA-204ENST00000380393 NESP48681 1621 aa13.18□□□□□ -0.3
PTPRA-204ENST00000380393 VSIG10Q8N0Z9 540 aa13.18□□□□□ -0.3
PTPRA-204ENST00000380393 RTL5Q5HYW3 569 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-204ENST00000380393 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
PTPRA-204ENST00000380393 A0A0U1RQG5 324 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-204ENST00000380393 PDE4CQ08493 712 aa13.14□□□□□ -0.31
PTPRA-204ENST00000380393 CDK11AQ9UQ88 783 aaPredicted RBP13.11□□□□□ -0.31
PTPRA-204ENST00000380393 CADPSQ9ULU8 1353 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms