RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 HSCBQ8IWL3 235 aa23.27■■□□□ 1.32
CCDC3-201ENST00000378825 MYO3AQ8NEV4 1616 aa23.27■■□□□ 1.32
CCDC3-201ENST00000378825 PPLO60437 1756 aa23.27■■□□□ 1.32
CCDC3-201ENST00000378825 ERBB4Q15303 1308 aa23.26■■□□□ 1.31
CCDC3-201ENST00000378825 ATF7IPQ6VMQ6 1270 aa23.26■■□□□ 1.31
CCDC3-201ENST00000378825 PNNQ9H307 717 aaKnown RBP23.26■■□□□ 1.31
CCDC3-201ENST00000378825 QRICH2Q9H0J4 1663 aa23.26■■□□□ 1.31
CCDC3-201ENST00000378825 CFAP74Q9C0B2 1584 aa23.26■■□□□ 1.31
CCDC3-201ENST00000378825 HDAC1Q13547 482 aaPredicted RBP23.26■■□□□ 1.31
CCDC3-201ENST00000378825 SIGLEC1Q9BZZ2 1709 aa23.26■■□□□ 1.31
CCDC3-201ENST00000378825 YEATS2Q9ULM3 1422 aa23.26■■□□□ 1.31
CCDC3-201ENST00000378825 CYB5RLQ6IPT4 315 aa23.25■■□□□ 1.31
CCDC3-201ENST00000378825 GAS2L3Q86XJ1 694 aa23.25■■□□□ 1.31
CCDC3-201ENST00000378825 GGNBP2Q9H3C7 697 aa23.25■■□□□ 1.31
CCDC3-201ENST00000378825 SETBP1Q9Y6X0 1596 aa23.25■■□□□ 1.31
CCDC3-201ENST00000378825 CD2BP2O95400 341 aaKnown RBP23.24■■□□□ 1.31
CCDC3-201ENST00000378825 TMPOP42166 694 aaKnown RBP23.24■■□□□ 1.31
CCDC3-201ENST00000378825 SMC5Q8IY18 1101 aa23.24■■□□□ 1.31
CCDC3-201ENST00000378825 RPGRIP1LQ68CZ1 1315 aa23.24■■□□□ 1.31
CCDC3-201ENST00000378825 VGFO15240 615 aaPredicted RBP23.24■■□□□ 1.31
CCDC3-201ENST00000378825 GRPEL1Q9HAV7 217 aa23.24■■□□□ 1.31
CCDC3-201ENST00000378825 TNPO1Q92973 898 aaKnown RBP23.23■■□□□ 1.31
CCDC3-201ENST00000378825 PLEKHF1Q96S99 279 aa23.23■■□□□ 1.31
CCDC3-201ENST00000378825 DDX19BQ9UMR2 479 aa23.23■■□□□ 1.31
CCDC3-201ENST00000378825 CLCN1P35523 988 aa23.23■■□□□ 1.31
CCDC3-201ENST00000378825 ZBTB40Q9NUA8 1239 aa23.22■■□□□ 1.31
CCDC3-201ENST00000378825 DDIT3P35638 169 aa23.22■■□□□ 1.31
CCDC3-201ENST00000378825 CAMSAP1Q5T5Y3 1602 aa23.21■■□□□ 1.31
CCDC3-201ENST00000378825 MRE11P49959 708 aa23.21■■□□□ 1.31
CCDC3-201ENST00000378825 FBXO31Q5XUX0 539 aaPredicted RBP23.2■■□□□ 1.3
CCDC3-201ENST00000378825 RBM42Q9BTD8 480 aaKnown RBP23.2■■□□□ 1.3
CCDC3-201ENST00000378825 C1orf115Q9H7X2 142 aa23.2■■□□□ 1.3
CCDC3-201ENST00000378825 ZC3H13Q5T200 1668 aaKnown RBP23.2■■□□□ 1.3
CCDC3-201ENST00000378825 EVC2Q86UK5 1308 aa23.2■■□□□ 1.3
CCDC3-201ENST00000378825 DIP2CQ9Y2E4 1556 aa23.19■■□□□ 1.3
CCDC3-201ENST00000378825 ADGRB2O60241 1585 aa23.18■■□□□ 1.3
CCDC3-201ENST00000378825 NEO1Q92859 1461 aa23.18■■□□□ 1.3
CCDC3-201ENST00000378825 KIF2CQ99661 725 aa23.18■■□□□ 1.3
CCDC3-201ENST00000378825 GLI2P10070 1586 aa23.18■■□□□ 1.3
CCDC3-201ENST00000378825 RIPK4P57078 832 aa23.17■■□□□ 1.3
CCDC3-201ENST00000378825 SRPK2P78362 688 aaKnown RBP23.17■■□□□ 1.3
CCDC3-201ENST00000378825 NCOA3Q9Y6Q9 1424 aa23.17■■□□□ 1.3
CCDC3-201ENST00000378825 DDX11L8A8MPP1 907 aa23.17■■□□□ 1.3
CCDC3-201ENST00000378825 NUCB1Q02818 461 aa23.17■■□□□ 1.3
CCDC3-201ENST00000378825 FBLN1P23142 703 aa23.16■■□□□ 1.3
CCDC3-201ENST00000378825 RBM25P49756 843 aaKnown RBP23.16■■□□□ 1.3
CCDC3-201ENST00000378825 MINK1Q8N4C8 1332 aaPredicted RBP23.16■■□□□ 1.3
CCDC3-201ENST00000378825 NEXMIFQ5QGS0 1516 aa23.16■■□□□ 1.3
CCDC3-201ENST00000378825 HSP90AB1P08238 724 aaKnown RBP23.16■■□□□ 1.3
CCDC3-201ENST00000378825 TULP4Q9NRJ4 1543 aa23.15■■□□□ 1.3
CCDC3-201ENST00000378825 ANKRD36BQ8N2N9 1353 aa23.15■■□□□ 1.3
CCDC3-201ENST00000378825 CHD1LQ86WJ1 897 aa23.14■■□□□ 1.3
CCDC3-201ENST00000378825 ESPNB1AK53 854 aa23.13■■□□□ 1.29
CCDC3-201ENST00000378825 A0A1W2PP64 1363 aa23.13■■□□□ 1.29
CCDC3-201ENST00000378825 ANKRD45Q5TZF3 282 aa23.12■■□□□ 1.29
CCDC3-201ENST00000378825 CT47B1P0C2W7 299 aaPredicted RBP23.11■■□□□ 1.29
CCDC3-201ENST00000378825 THUMPD2Q9BTF0 503 aaKnown RBP23.11■■□□□ 1.29
CCDC3-201ENST00000378825 PRAM1Q96QH2 718 aa23.11■■□□□ 1.29
CCDC3-201ENST00000378825 USP32Q8NFA0 1604 aa23.11■■□□□ 1.29
CCDC3-201ENST00000378825 SNX21Q969T3 373 aa23.1■■□□□ 1.29
CCDC3-201ENST00000378825 FAM69CQ0P6D2 419 aa23.1■■□□□ 1.29
CCDC3-201ENST00000378825 SLC52A1Q9NWF4 448 aa23.1■■□□□ 1.29
CCDC3-201ENST00000378825 PIK3C2BO00750 1634 aa23.1■■□□□ 1.29
CCDC3-201ENST00000378825 RAB3GAP1Q15042 981 aa23.1■■□□□ 1.29
CCDC3-201ENST00000378825 ELL2O00472 640 aaPredicted RBP23.09■■□□□ 1.29
CCDC3-201ENST00000378825 HSP90AA1P07900 732 aaKnown RBP23.09■■□□□ 1.29
CCDC3-201ENST00000378825 SSFA2P28290 1259 aa23.09■■□□□ 1.29
CCDC3-201ENST00000378825 STAG3Q9UJ98 1225 aa23.09■■□□□ 1.29
CCDC3-201ENST00000378825 ARHGEF28Q8N1W1 1705 aaKnown RBP23.08■■□□□ 1.29
CCDC3-201ENST00000378825 RICTORQ6R327 1708 aa23.08■■□□□ 1.28
CCDC3-201ENST00000378825 FYB1O15117 783 aa23.08■■□□□ 1.28
CCDC3-201ENST00000378825 TBC1D9Q6ZT07 1266 aa23.08■■□□□ 1.28
CCDC3-201ENST00000378825 GAS2L2Q8NHY3 880 aa23.08■■□□□ 1.28
CCDC3-201ENST00000378825 COL3A1P02461 1466 aaPredicted RBP23.07■■□□□ 1.28
CCDC3-201ENST00000378825 MLECQ14165 292 aa23.07■■□□□ 1.28
CCDC3-201ENST00000378825 PPIP5K1Q6PFW1 1433 aa23.07■■□□□ 1.28
CCDC3-201ENST00000378825 AK9Q5TCS8 1911 aa23.06■■□□□ 1.28
CCDC3-201ENST00000378825 TSPYL6Q8N831 410 aa23.06■■□□□ 1.28
CCDC3-201ENST00000378825 ABCC11Q96J66 1382 aa23.06■■□□□ 1.28
CCDC3-201ENST00000378825 MYO5BQ9ULV0 1848 aa23.06■■□□□ 1.28
CCDC3-201ENST00000378825 ARHGAP31Q2M1Z3 1444 aa23.05■■□□□ 1.28
CCDC3-201ENST00000378825 SIRT2Q8IXJ6 389 aa23.05■■□□□ 1.28
CCDC3-201ENST00000378825 KIF16BQ96L93 1317 aa23.05■■□□□ 1.28
CCDC3-201ENST00000378825 BMP2KLQ5H9B9 411 aa23.05■■□□□ 1.28
CCDC3-201ENST00000378825 NCBP3Q53F19 620 aaKnown RBP23.04■■□□□ 1.28
CCDC3-201ENST00000378825 NSD2O96028 1365 aa23.04■■□□□ 1.28
CCDC3-201ENST00000378825 ZBTB7BO15156 539 aaPredicted RBP23.03■■□□□ 1.28
CCDC3-201ENST00000378825 IPO8O15397 1037 aaKnown RBP23.03■■□□□ 1.28
CCDC3-201ENST00000378825 TRIM44Q96DX7 344 aaPredicted RBP23.03■■□□□ 1.28
CCDC3-201ENST00000378825 GBP4Q96PP9 640 aa23.03■■□□□ 1.28
CCDC3-201ENST00000378825 ATAD2Q6PL18 1390 aa23.02■■□□□ 1.28
CCDC3-201ENST00000378825 HSP90AA2PQ14568 343 aaPredicted RBP23.02■■□□□ 1.28
CCDC3-201ENST00000378825 K7ELQ4 463 aaPredicted RBP23.02■■□□□ 1.27
CCDC3-201ENST00000378825 DIAPH1O60610 1272 aaKnown RBP23.02■■□□□ 1.27
CCDC3-201ENST00000378825 HMOX1P09601 288 aa23.01■■□□□ 1.27
CCDC3-201ENST00000378825 PHACTR3Q96KR7 559 aa23.01■■□□□ 1.27
CCDC3-201ENST00000378825 PRKAR2BP31323 418 aa23■■□□□ 1.27
CCDC3-201ENST00000378825 IL16Q14005 1332 aa23■■□□□ 1.27
CCDC3-201ENST00000378825 CIZ1Q9ULV3 898 aaPredicted RBP23■■□□□ 1.27
CCDC3-201ENST00000378825 WAPLQ7Z5K2 1190 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms