RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 DLC1Q96QB1 1528 aa18.73■□□□□ 0.59
TDP2-201ENST00000341060 PLEKHF1Q96S99 279 aa18.73■□□□□ 0.59
TDP2-201ENST00000341060 GGNBP2Q9H3C7 697 aa18.73■□□□□ 0.59
TDP2-201ENST00000341060 FYB1O15117 783 aa18.72■□□□□ 0.59
TDP2-201ENST00000341060 POGKQ9P215 609 aa18.72■□□□□ 0.59
TDP2-201ENST00000341060 SPATA31D1Q6ZQQ2 1576 aa18.71■□□□□ 0.59
TDP2-201ENST00000341060 CT47B1P0C2W7 299 aaPredicted RBP18.71■□□□□ 0.59
TDP2-201ENST00000341060 CDC42BPGQ6DT37 1551 aa18.71■□□□□ 0.59
TDP2-201ENST00000341060 RLBP1P12271 317 aa18.71■□□□□ 0.59
TDP2-201ENST00000341060 PMFBP1Q8TBY8 1022 aa18.71■□□□□ 0.59
TDP2-201ENST00000341060 SENP3Q9H4L4 574 aaPredicted RBP18.7■□□□□ 0.58
TDP2-201ENST00000341060 NEFMP07197 916 aa18.7■□□□□ 0.58
TDP2-201ENST00000341060 BCL2L13Q9BXK5 485 aa18.7■□□□□ 0.58
TDP2-201ENST00000341060 ZMYM3Q14202 1370 aa18.69■□□□□ 0.58
TDP2-201ENST00000341060 PNPLA6Q8IY17 1366 aa18.69■□□□□ 0.58
TDP2-201ENST00000341060 MAP2P11137 1827 aaKnown RBP18.69■□□□□ 0.58
TDP2-201ENST00000341060 A2ML1A8K2U0 1454 aa18.68■□□□□ 0.58
TDP2-201ENST00000341060 U2SURPO15042 1029 aaKnown RBP18.68■□□□□ 0.58
TDP2-201ENST00000341060 TMPOP42166 694 aaKnown RBP18.68■□□□□ 0.58
TDP2-201ENST00000341060 HDGFL2Q7Z4V5 671 aaPredicted RBP18.68■□□□□ 0.58
TDP2-201ENST00000341060 CDK19Q9BWU1 502 aa18.67■□□□□ 0.58
TDP2-201ENST00000341060 TNNQ9UQP3 1299 aa18.67■□□□□ 0.58
TDP2-201ENST00000341060 ATP7BP35670 1465 aa18.67■□□□□ 0.58
TDP2-201ENST00000341060 DAXXQ9UER7 740 aaPredicted RBP18.66■□□□□ 0.58
TDP2-201ENST00000341060 TRIM35Q9UPQ4 493 aa18.66■□□□□ 0.58
TDP2-201ENST00000341060 PCDHB15Q9Y5E8 787 aa18.66■□□□□ 0.58
TDP2-201ENST00000341060 IL16Q14005 1332 aa18.65■□□□□ 0.58
TDP2-201ENST00000341060 PLPPR3Q6T4P5 718 aa18.65■□□□□ 0.58
TDP2-201ENST00000341060 STAG3Q9UJ98 1225 aa18.65■□□□□ 0.58
TDP2-201ENST00000341060 LRRC7Q96NW7 1537 aa18.65■□□□□ 0.58
TDP2-201ENST00000341060 MVPQ14764 893 aaKnown RBP18.65■□□□□ 0.58
TDP2-201ENST00000341060 ZKSCAN2Q63HK3 967 aa18.65■□□□□ 0.58
TDP2-201ENST00000341060 NRXN3Q9Y4C0 1643 aa18.65■□□□□ 0.58
TDP2-201ENST00000341060 TSR2Q969E8 191 aaKnown RBP18.64■□□□□ 0.57
TDP2-201ENST00000341060 DIAPH1O60610 1272 aaKnown RBP18.64■□□□□ 0.57
TDP2-201ENST00000341060 CEBPAP49715 358 aaPredicted RBP18.63■□□□□ 0.57
TDP2-201ENST00000341060 CABP1Q9NZU7 370 aa18.63■□□□□ 0.57
TDP2-201ENST00000341060 USP19O94966 1318 aa18.63■□□□□ 0.57
TDP2-201ENST00000341060 SLC4A3P48751 1232 aa18.62■□□□□ 0.57
TDP2-201ENST00000341060 PNNQ9H307 717 aaKnown RBP18.62■□□□□ 0.57
TDP2-201ENST00000341060 RIMS2Q9UQ26 1411 aa18.62■□□□□ 0.57
TDP2-201ENST00000341060 KNDC1Q76NI1 1749 aa18.61■□□□□ 0.57
TDP2-201ENST00000341060 EXOSC9Q06265 439 aaKnown RBP18.61■□□□□ 0.57
TDP2-201ENST00000341060 FTSJ3Q8IY81 847 aaKnown RBP18.61■□□□□ 0.57
TDP2-201ENST00000341060 DZIP1LQ8IYY4 767 aaKnown RBP18.61■□□□□ 0.57
TDP2-201ENST00000341060 RWDD1Q9H446 243 aaPredicted RBP18.61■□□□□ 0.57
TDP2-201ENST00000341060 SMC4Q9NTJ3 1288 aa18.6■□□□□ 0.57
TDP2-201ENST00000341060 FAM135BQ49AJ0 1406 aa18.59■□□□□ 0.57
TDP2-201ENST00000341060 MON2Q7Z3U7 1717 aa18.59■□□□□ 0.57
TDP2-201ENST00000341060 RIPK4P57078 832 aa18.59■□□□□ 0.57
TDP2-201ENST00000341060 FCHSD2O94868 740 aa18.58■□□□□ 0.57
TDP2-201ENST00000341060 PDZRN3Q9UPQ7 1066 aa18.58■□□□□ 0.57
TDP2-201ENST00000341060 TRIM27P14373 513 aa18.58■□□□□ 0.56
TDP2-201ENST00000341060 SSH1Q8WYL5 1049 aa18.58■□□□□ 0.56
TDP2-201ENST00000341060 AKAP12Q02952 1782 aa18.57■□□□□ 0.56
TDP2-201ENST00000341060 SEC24BO95487 1268 aa18.56■□□□□ 0.56
TDP2-201ENST00000341060 CPSF1Q10570 1443 aaKnown RBP18.56■□□□□ 0.56
TDP2-201ENST00000341060 NFKBIBQ15653 356 aa18.56■□□□□ 0.56
TDP2-201ENST00000341060 WAPLQ7Z5K2 1190 aa18.56■□□□□ 0.56
TDP2-201ENST00000341060 DLG5Q8TDM6 1919 aa18.56■□□□□ 0.56
TDP2-201ENST00000341060 ITSN1Q15811 1721 aa18.56■□□□□ 0.56
TDP2-201ENST00000341060 EDC4Q6P2E9 1401 aaKnown RBP18.56■□□□□ 0.56
TDP2-201ENST00000341060 ATF7IPQ6VMQ6 1270 aa18.56■□□□□ 0.56
TDP2-201ENST00000341060 DDX19BQ9UMR2 479 aa18.55■□□□□ 0.56
TDP2-201ENST00000341060 FER1L4A9Z1Z3 1794 aa18.55■□□□□ 0.56
TDP2-201ENST00000341060 RSPH6AQ9H0K4 717 aa18.55■□□□□ 0.56
TDP2-201ENST00000341060 POLKQ9UBT6 870 aa18.55■□□□□ 0.56
TDP2-201ENST00000341060 PPIP5K1Q6PFW1 1433 aa18.54■□□□□ 0.56
TDP2-201ENST00000341060 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.54■□□□□ 0.562e-6■■■□□ 16.6
TDP2-201ENST00000341060 KIF16BQ96L93 1317 aa18.54■□□□□ 0.56
TDP2-201ENST00000341060 TNRQ92752 1358 aa18.54■□□□□ 0.56
TDP2-201ENST00000341060 CDK12Q9NYV4 1490 aaPredicted RBP18.54■□□□□ 0.56
TDP2-201ENST00000341060 C3P01024 1663 aa18.53■□□□□ 0.56
TDP2-201ENST00000341060 HDAC1Q13547 482 aaPredicted RBP18.52■□□□□ 0.56
TDP2-201ENST00000341060 CPS1P31327 1500 aa18.52■□□□□ 0.56
TDP2-201ENST00000341060 ALDH1L2Q3SY69 923 aa18.52■□□□□ 0.55
TDP2-201ENST00000341060 NOB1Q9ULX3 412 aaKnown RBP18.52■□□□□ 0.55
TDP2-201ENST00000341060 TECPR2O15040 1411 aa18.51■□□□□ 0.55
TDP2-201ENST00000341060 PRKAR2BP31323 418 aa18.51■□□□□ 0.55
TDP2-201ENST00000341060 ITPRIPQ8IWB1 547 aa18.51■□□□□ 0.55
TDP2-201ENST00000341060 METP08581 1390 aa18.5■□□□□ 0.55
TDP2-201ENST00000341060 WASLO00401 505 aaPredicted RBP18.5■□□□□ 0.55
TDP2-201ENST00000341060 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.5■□□□□ 0.55
TDP2-201ENST00000341060 ZNF428Q96B54 188 aa18.5■□□□□ 0.55
TDP2-201ENST00000341060 AATKQ6ZMQ8 1374 aa18.49■□□□□ 0.55
TDP2-201ENST00000341060 IPO8O15397 1037 aaKnown RBP18.49■□□□□ 0.55
TDP2-201ENST00000341060 UPF2Q9HAU5 1272 aaKnown RBP18.49■□□□□ 0.55
TDP2-201ENST00000341060 FBLN1P23142 703 aa18.49■□□□□ 0.55
TDP2-201ENST00000341060 UBR1Q8IWV7 1749 aa18.48■□□□□ 0.55
TDP2-201ENST00000341060 BRPF1P55201 1214 aaPredicted RBP18.48■□□□□ 0.55
TDP2-201ENST00000341060 BECN1Q14457 450 aa18.48■□□□□ 0.55
TDP2-201ENST00000341060 TMEM57Q8N5G2 664 aa18.48■□□□□ 0.55
TDP2-201ENST00000341060 TBC1D32Q96NH3 1257 aa18.48■□□□□ 0.55
TDP2-201ENST00000341060 ZBTB40Q9NUA8 1239 aa18.47■□□□□ 0.55
TDP2-201ENST00000341060 NFE2L2Q16236 605 aa18.47■□□□□ 0.55
TDP2-201ENST00000341060 SMC5Q8IY18 1101 aa18.46■□□□□ 0.55
TDP2-201ENST00000341060 EMILIN1Q9Y6C2 1016 aa18.46■□□□□ 0.55
TDP2-201ENST00000341060 IL13P35225 146 aa18.46■□□□□ 0.55
TDP2-201ENST00000341060 SIRT1Q96EB6 747 aa18.46■□□□□ 0.55
TDP2-201ENST00000341060 NRKQ7Z2Y5 1582 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms