RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 ADGRB3O60242 1522 aa9.52□□□□□ -0.88
DEPDC4-201ENST00000299185 MYO5BQ9ULV0 1848 aa9.52□□□□□ -0.89
DEPDC4-201ENST00000299185 CEP170BQ9Y4F5 1589 aaPredicted RBP9.51□□□□□ -0.89
DEPDC4-201ENST00000299185 PLPP6Q8IY26 295 aa9.51□□□□□ -0.89
DEPDC4-201ENST00000299185 CCDC144AA2RUR9 1427 aa9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 RGL2O15211 777 aa9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 CHGAP10645 457 aaKnown RBP9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 NEUROD1Q13562 356 aa9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 KCNK17Q96T54 332 aa9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 GPHNQ9NQX3 736 aaPredicted RBP9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 ZNF142P52746 1687 aaPredicted RBP9.5□□□□□ -0.89
DEPDC4-201ENST00000299185 UBR1Q8IWV7 1749 aa9.49□□□□□ -0.89
DEPDC4-201ENST00000299185 IRX2Q9BZI1 471 aaPredicted RBP9.49□□□□□ -0.89
DEPDC4-201ENST00000299185 TMEM131LA2VDJ0 1609 aa9.49□□□□□ -0.89
DEPDC4-201ENST00000299185 SPATA31E1Q6ZUB1 1445 aa9.48□□□□□ -0.89
DEPDC4-201ENST00000299185 PTPN5P54829 565 aa9.48□□□□□ -0.89
DEPDC4-201ENST00000299185 NUTM2DQ5VT03 806 aaPredicted RBP9.48□□□□□ -0.89
DEPDC4-201ENST00000299185 VPS9D1Q9Y2B5 631 aa9.48□□□□□ -0.89
DEPDC4-201ENST00000299185 A2ML1A8K2U0 1454 aa9.47□□□□□ -0.89
DEPDC4-201ENST00000299185 IDI1Q13907 227 aa9.47□□□□□ -0.89
DEPDC4-201ENST00000299185 SLC4A5Q9BY07 1137 aa9.47□□□□□ -0.89
DEPDC4-201ENST00000299185 NEXMIFQ5QGS0 1516 aa9.46□□□□□ -0.89
DEPDC4-201ENST00000299185 HSPA2P54652 639 aa9.46□□□□□ -0.9
DEPDC4-201ENST00000299185 UHRF1BP1Q6BDS2 1440 aa9.46□□□□□ -0.9
DEPDC4-201ENST00000299185 NLRP1Q9C000 1473 aa9.46□□□□□ -0.9
DEPDC4-201ENST00000299185 KIF1BO60333 1816 aa9.45□□□□□ -0.9
DEPDC4-201ENST00000299185 RGL3Q3MIN7 710 aa9.45□□□□□ -0.9
DEPDC4-201ENST00000299185 IFT172Q9UG01 1749 aa9.45□□□□□ -0.9
DEPDC4-201ENST00000299185 PPLO60437 1756 aa9.43□□□□□ -0.9
DEPDC4-201ENST00000299185 RIMS2Q9UQ26 1411 aa9.43□□□□□ -0.9
DEPDC4-201ENST00000299185 IQGAP1P46940 1657 aa9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 NEURL4Q96JN8 1562 aa9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 ZFYVE9O95405 1425 aa9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 TONSLQ96HA7 1378 aa9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 GOLGA8CPA6NN73 597 aa9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 DSG2Q14126 1118 aa9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 ZNF326Q5BKZ1 582 aaKnown RBP9.42□□□□□ -0.9
DEPDC4-201ENST00000299185 ARHGAP23Q9P227 1491 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 ACIN1Q9UKV3 1341 aaKnown RBP9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 A0A0G2JS52 829 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 THSD4Q6ZMP0 1018 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 L3MBTL2Q969R5 705 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 BCL2L12Q9HB09 334 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 NRXN3Q9Y4C0 1643 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 ASXL1Q8IXJ9 1541 aa9.41□□□□□ -0.9
DEPDC4-201ENST00000299185 SLC52A1Q9NWF4 448 aa9.4□□□□□ -0.9
DEPDC4-201ENST00000299185 KDM2AQ9Y2K7 1162 aa9.4□□□□□ -0.9
DEPDC4-201ENST00000299185 SLIT1O75093 1534 aa9.4□□□□□ -0.91
DEPDC4-201ENST00000299185 TMEM2Q9UHN6 1383 aa9.39□□□□□ -0.91
DEPDC4-201ENST00000299185 KDM5AP29375 1690 aaKnown RBP9.39□□□□□ -0.91
DEPDC4-201ENST00000299185 ADGRF5Q8IZF2 1346 aa9.39□□□□□ -0.91
DEPDC4-201ENST00000299185 ZNF454Q8N9F8 522 aa9.39□□□□□ -0.91
DEPDC4-201ENST00000299185 MYOM2P54296 1465 aa9.39□□□□□ -0.91
DEPDC4-201ENST00000299185 POLR1AO95602 1720 aaPredicted RBP9.39□□□□□ -0.91
DEPDC4-201ENST00000299185 NCKAP5LQ9HCH0 1330 aa9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 BHMG1C9JSJ3 638 aaPredicted RBP9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 PTPREP23469 700 aa9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 LTKP29376 864 aa9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 NBPF8Q3BBV2 869 aa9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 MRPL50Q8N5N7 158 aaKnown RBP9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 OXER1Q8TDS5 423 aa9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 WNT2BQ93097 391 aa9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 SCAF11Q99590 1463 aaKnown RBP9.38□□□□□ -0.91
DEPDC4-201ENST00000299185 CLSPNQ9HAW4 1339 aa9.37□□□□□ -0.91
DEPDC4-201ENST00000299185 DCAF11Q8TEB1 546 aa9.37□□□□□ -0.91
DEPDC4-201ENST00000299185 PRAG1Q86YV5 1406 aa9.37□□□□□ -0.91
DEPDC4-201ENST00000299185 SETD1AO15047 1707 aaKnown RBP9.36□□□□□ -0.91
DEPDC4-201ENST00000299185 NRXN1Q9ULB1 1477 aa9.36□□□□□ -0.91
DEPDC4-201ENST00000299185 PPP1R15AO75807 674 aaPredicted RBP9.36□□□□□ -0.91
DEPDC4-201ENST00000299185 NBPF3Q9H094 633 aa9.36□□□□□ -0.91
DEPDC4-201ENST00000299185 STRCQ7RTU9 1775 aa9.36□□□□□ -0.91
DEPDC4-201ENST00000299185 PIK3C2GO75747 1445 aa9.36□□□□□ -0.91
DEPDC4-201ENST00000299185 TRPM1Q7Z4N2 1603 aa9.35□□□□□ -0.91
DEPDC4-201ENST00000299185 ADAMTS13Q76LX8 1427 aa9.35□□□□□ -0.91
DEPDC4-201ENST00000299185 SETBP1Q9Y6X0 1596 aa9.34□□□□□ -0.91
DEPDC4-201ENST00000299185 SETD1BQ9UPS6 1966 aaKnown RBP9.34□□□□□ -0.91
DEPDC4-201ENST00000299185 NPHP4O75161 1426 aaPredicted RBP9.34□□□□□ -0.91
DEPDC4-201ENST00000299185 TXNDC2Q86VQ3 553 aa9.34□□□□□ -0.91
DEPDC4-201ENST00000299185 UPF1Q92900 1129 aaKnown RBP eCLIP9.34□□□□□ -0.91
DEPDC4-201ENST00000299185 FOSBP53539 338 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 CFAP70Q5T0N1 1121 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 ZBED2Q9BTP6 218 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 ALKQ9UM73 1620 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 PLEKHG1Q9ULL1 1385 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 RALGAPBQ86X10 1494 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 ADGRB1O14514 1584 aa9.33□□□□□ -0.92
DEPDC4-201ENST00000299185 THEMISQ8N1K5 641 aaPredicted RBP9.32□□□□□ -0.92
DEPDC4-201ENST00000299185 BCANQ96GW7 911 aa9.32□□□□□ -0.92
DEPDC4-201ENST00000299185 SLC26A8Q96RN1 970 aa9.32□□□□□ -0.92
DEPDC4-201ENST00000299185 PTPRUQ92729 1446 aa9.31□□□□□ -0.92
DEPDC4-201ENST00000299185 NBPF1Q3BBV0 1214 aa9.31□□□□□ -0.92
DEPDC4-201ENST00000299185 METP08581 1390 aa9.31□□□□□ -0.92
DEPDC4-201ENST00000299185 RPGRIP1LQ68CZ1 1315 aa9.31□□□□□ -0.92
DEPDC4-201ENST00000299185 MED14O60244 1454 aa9.3□□□□□ -0.92
DEPDC4-201ENST00000299185 TMEM132EQ6IEE7 984 aa9.3□□□□□ -0.92
DEPDC4-201ENST00000299185 LAMC1P11047 1609 aa9.3□□□□□ -0.92
DEPDC4-201ENST00000299185 STRCP1A6NGW2 1772 aa9.29□□□□□ -0.92
DEPDC4-201ENST00000299185 XRN1Q8IZH2 1706 aaKnown RBP9.29□□□□□ -0.92
DEPDC4-201ENST00000299185 ANKLE2Q86XL3 938 aa9.29□□□□□ -0.92
DEPDC4-201ENST00000299185 HS6ST3Q8IZP7 471 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms