RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W RPC31P17890 251 aa8.17□□□□□ -1.1
RRP40YOL142W LYS5P50113 272 aa8.17□□□□□ -1.1
RRP40YOL142W YGR035CP53222 116 aa8.17□□□□□ -1.1
RRP40YOL142W ADE12P80210 433 aaKnown RBP8.17□□□□□ -1.1
RRP40YOL142W YDR461C-AQ2V2P7 80 aa8.17□□□□□ -1.1
RRP40YOL142W DYS1P38791 387 aa8.16□□□□□ -1.1
RRP40YOL142W SKP1P52286 194 aa8.16□□□□□ -1.1
RRP40YOL142W SYT1Q06836 1226 aa8.16□□□□□ -1.1
RRP40YOL142W LDH1P38139 375 aa8.15□□□□□ -1.1
RRP40YOL142W CUS1Q02554 436 aaPredicted RBP8.15□□□□□ -1.1
RRP40YOL142W APC11Q12157 165 aa8.15□□□□□ -1.1
RRP40YOL142W FPS1P23900 669 aa8.14□□□□□ -1.11
RRP40YOL142W HAT1Q12341 374 aa8.14□□□□□ -1.11
RRP40YOL142W RPP1AP05318 106 aaPredicted RBP8.12□□□□□ -1.11
RRP40YOL142W KTR2P33550 425 aa8.12□□□□□ -1.11
RRP40YOL142W JJJ3P47138 172 aa8.12□□□□□ -1.11
RRP40YOL142W DPH6Q12429 685 aa8.12□□□□□ -1.11
RRP40YOL142W RPB10P22139 70 aa8.11□□□□□ -1.11
RRP40YOL142W NAB2P32505 525 aaKnown RBP RIP-Chip data8.11□□□□□ -1.11not detected
RRP40YOL142W GLO3P38682 493 aaKnown RBP8.11□□□□□ -1.11
RRP40YOL142W SUT1P53032 299 aaKnown RBP8.11□□□□□ -1.11
RRP40YOL142W ATG1P53104 897 aa8.11□□□□□ -1.11
RRP40YOL142W QDR1P40475 563 aa8.1□□□□□ -1.11
RRP40YOL142W HXT8P40886 569 aa8.1□□□□□ -1.11
RRP40YOL142W YOR296WQ08748 1289 aa8.1□□□□□ -1.11
RRP40YOL142W MSN1P22148 382 aa8.09□□□□□ -1.11
RRP40YOL142W BSD2P38356 321 aa8.09□□□□□ -1.11
RRP40YOL142W MSC7P38694 644 aa8.09□□□□□ -1.11
RRP40YOL142W APM2P38700 605 aa8.09□□□□□ -1.11
RRP40YOL142W ERP5P38819 212 aa8.09□□□□□ -1.11
RRP40YOL142W YNR040WP53736 256 aa8.09□□□□□ -1.11
RRP40YOL142W YBL113CQ7M4S9 792 aa8.09□□□□□ -1.11
RRP40YOL142W TRL1P09880 827 aaKnown RBP8.08□□□□□ -1.12
RRP40YOL142W NCL1P38205 684 aaKnown RBP8.08□□□□□ -1.12
RRP40YOL142W GIP1P38229 639 aa8.08□□□□□ -1.12
RRP40YOL142W TRK2P28584 889 aa8.07□□□□□ -1.12
RRP40YOL142W ISW1P38144 1129 aa8.07□□□□□ -1.12
RRP40YOL142W TY1A-DR2Q03964 440 aaKnown RBP8.07□□□□□ -1.12
RRP40YOL142W GRS1P38088 690 aaKnown RBP8.06□□□□□ -1.12
RRP40YOL142W ITC1P53125 1264 aa8.06□□□□□ -1.12
RRP40YOL142W HEH2Q03281 663 aa8.06□□□□□ -1.12
RRP40YOL142W SSF1P38789 453 aaPredicted RBP8.05□□□□□ -1.12
RRP40YOL142W ACF4P47129 309 aa8.05□□□□□ -1.12
RRP40YOL142W HSL1P34244 1518 aa8.04□□□□□ -1.12
RRP40YOL142W FIR1P40020 876 aa8.04□□□□□ -1.12
RRP40YOL142W MDJ2P42834 146 aa8.04□□□□□ -1.12
RRP40YOL142W RGD2P43556 714 aa8.03□□□□□ -1.12
RRP40YOL142W DNA2P38859 1522 aa8.03□□□□□ -1.12
RRP40YOL142W SMC1P32908 1225 aa8.02□□□□□ -1.13
RRP40YOL142W GPM1P00950 247 aaKnown RBP8.01□□□□□ -1.13
RRP40YOL142W RAD55P38953 406 aa8.01□□□□□ -1.13
RRP40YOL142W NTA1P40354 457 aa8.01□□□□□ -1.13
RRP40YOL142W PRK1P40494 810 aa8.01□□□□□ -1.13
RRP40YOL142W IDI1P15496 288 aa8□□□□□ -1.13
RRP40YOL142W YBR287WP38355 427 aa8□□□□□ -1.13
RRP40YOL142W UFD2P54860 961 aa8□□□□□ -1.13
RRP40YOL142W PDC5P16467 563 aaKnown RBP7.99□□□□□ -1.13
RRP40YOL142W YER156CP40093 338 aaKnown RBP7.99□□□□□ -1.13
RRP40YOL142W YIL165CP40446 119 aa7.99□□□□□ -1.13
RRP40YOL142W TRS120Q04183 1289 aa7.99□□□□□ -1.13
RRP40YOL142W EMG1Q06287 252 aaKnown RBP7.99□□□□□ -1.13
RRP40YOL142W KOG1P38873 1557 aa7.98□□□□□ -1.13
RRP40YOL142W KNS1P32350 737 aaPredicted RBP7.98□□□□□ -1.13
RRP40YOL142W TIF6Q12522 245 aaKnown RBP7.98□□□□□ -1.13
RRP40YOL142W IRS4P36115 615 aaKnown RBP7.97□□□□□ -1.13
RRP40YOL142W AIM46P38885 310 aa7.97□□□□□ -1.13
RRP40YOL142W SPT6P23615 1451 aaKnown RBP7.97□□□□□ -1.13
RRP40YOL142W PSY2P40164 858 aa7.96□□□□□ -1.14
RRP40YOL142W NUT2Q06213 157 aa7.96□□□□□ -1.14
RRP40YOL142W FRT1Q99332 602 aa7.96□□□□□ -1.14
RRP40YOL142W YML020WQ03722 664 aa7.95□□□□□ -1.14
RRP40YOL142W AI1P03875 834 aa7.94□□□□□ -1.14
RRP40YOL142W YHL050CP38721 697 aa7.94□□□□□ -1.14
RRP40YOL142W YHR219WP38900 624 aa7.94□□□□□ -1.14
RRP40YOL142W MNL2Q12205 849 aa7.94□□□□□ -1.14
RRP40YOL142W MRP10O75012 95 aa7.93□□□□□ -1.14
RRP40YOL142W STM1P39015 273 aaKnown RBP7.93□□□□□ -1.14
RRP40YOL142W PPT1P53043 513 aa7.93□□□□□ -1.14
RRP40YOL142W RSC2Q06488 889 aa7.93□□□□□ -1.14
RRP40YOL142W RSC4Q02206 625 aa7.92□□□□□ -1.14
RRP40YOL142W YJL181WP46987 611 aa7.9□□□□□ -1.14
RRP40YOL142W YNL011CP53980 444 aa7.9□□□□□ -1.14
RRP40YOL142W NOP8Q08287 484 aaPredicted RBP7.9□□□□□ -1.14
RRP40YOL142W THI72Q08579 599 aa7.9□□□□□ -1.14
RRP40YOL142W MDJ1P35191 511 aa7.89□□□□□ -1.15
RRP40YOL142W SBE2P42223 864 aaKnown RBP7.89□□□□□ -1.15
RRP40YOL142W YFL066CP43538 392 aa7.89□□□□□ -1.15
RRP40YOL142W SEN54Q02825 467 aaPredicted RBP7.89□□□□□ -1.15
RRP40YOL142W GPI13Q07830 1017 aa7.89□□□□□ -1.15
RRP40YOL142W MSC6Q08818 692 aaKnown RBP7.89□□□□□ -1.15
RRP40YOL142W CDC55Q00362 526 aa7.88□□□□□ -1.15
RRP40YOL142W NAR1P23503 491 aaKnown RBP7.87□□□□□ -1.15
RRP40YOL142W MET1P36150 593 aa7.87□□□□□ -1.15
RRP40YOL142W PPX1P38698 397 aa7.87□□□□□ -1.15
RRP40YOL142W YNR014WP53719 212 aa7.87□□□□□ -1.15
RRP40YOL142W NSG2P53898 299 aa7.87□□□□□ -1.15
RRP40YOL142W GIS4Q04233 774 aa7.87□□□□□ -1.15
RRP40YOL142W HIR3P47171 1648 aa7.87□□□□□ -1.15
RRP40YOL142W PYC2P32327 1180 aaKnown RBP7.86□□□□□ -1.15
RRP40YOL142W SLD2P34252 453 aa7.86□□□□□ -1.15
Retrieved 100 of 5,963 RNA–protein pairs in 89.2 ms