RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C RNA1P11745 407 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C TPD3P31383 635 aa5.89□□□□□ -1.47
NUP116YMR047C PRP42Q03776 544 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C THS1P04801 734 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C GAL2P13181 574 aa5.89□□□□□ -1.47
NUP116YMR047C MOT2P34909 587 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C WRS1Q12109 432 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C TIF6Q12522 245 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C ARG82P07250 355 aa5.88□□□□□ -1.47
NUP116YMR047C SUI2P20459 304 aaKnown RBP5.88□□□□□ -1.47
NUP116YMR047C ZDS2P54786 942 aa5.88□□□□□ -1.47
NUP116YMR047C VPS64Q03944 604 aa5.88□□□□□ -1.47
NUP116YMR047C LCB1P25045 558 aaKnown RBP5.88□□□□□ -1.47
NUP116YMR047C MGM1P32266 881 aa5.88□□□□□ -1.47
NUP116YMR047C VHR2P40041 505 aa5.88□□□□□ -1.47
NUP116YMR047C FLO1P32768 1537 aa5.88□□□□□ -1.47
NUP116YMR047C CSR2Q12734 1121 aa5.87□□□□□ -1.47
NUP116YMR047C CYB2P00175 591 aa5.87□□□□□ -1.47
NUP116YMR047C TOP1P04786 769 aa5.87□□□□□ -1.47
NUP116YMR047C SWE1P32944 819 aa5.87□□□□□ -1.47
NUP116YMR047C RSC30P38781 883 aa5.87□□□□□ -1.47
NUP116YMR047C SET4P42948 560 aa5.87□□□□□ -1.47
NUP116YMR047C MSH4P40965 878 aaPredicted RBP5.86□□□□□ -1.47
NUP116YMR047C NUP133P36161 1157 aa5.86□□□□□ -1.47
NUP116YMR047C NCS6P53088 359 aa5.86□□□□□ -1.47
NUP116YMR047C PKH1Q03407 766 aa5.86□□□□□ -1.47
NUP116YMR047C FLO11P08640 1367 aa5.86□□□□□ -1.47
NUP116YMR047C PES4P39684 611 aa5.86□□□□□ -1.47
NUP116YMR047C GLO3P38682 493 aaKnown RBP5.85□□□□□ -1.47
NUP116YMR047C MTC3P53077 123 aa5.85□□□□□ -1.47
NUP116YMR047C THI3Q07471 609 aa5.85□□□□□ -1.47
NUP116YMR047C GYP5Q12344 894 aa5.85□□□□□ -1.47
NUP116YMR047C SRC1Q03707 834 aa5.84□□□□□ -1.47
NUP116YMR047C RPT4P53549 437 aaKnown RBP5.84□□□□□ -1.47
NUP116YMR047C SNU66Q12420 587 aaPredicted RBP5.84□□□□□ -1.47
NUP116YMR047C DIT2P21595 489 aa5.83□□□□□ -1.48
NUP116YMR047C RAD24P32641 659 aa5.83□□□□□ -1.48
NUP116YMR047C YFH7P43591 353 aa5.83□□□□□ -1.48
NUP116YMR047C IRC4Q03036 179 aa5.83□□□□□ -1.48
NUP116YMR047C NOP8Q08287 484 aaPredicted RBP5.83□□□□□ -1.48
NUP116YMR047C PCS60P38137 543 aaKnown RBP RIP-Chip data5.83□□□□□ -1.48not detected
NUP116YMR047C SNF3P10870 884 aa5.82□□□□□ -1.48
NUP116YMR047C FCP1Q03254 732 aa5.82□□□□□ -1.48
NUP116YMR047C GAS5Q08193 484 aa5.82□□□□□ -1.48
NUP116YMR047C PCL8Q08966 492 aa5.82□□□□□ -1.48
NUP116YMR047C CAF20P12962 161 aaKnown RBP5.82□□□□□ -1.48
NUP116YMR047C AFG2P32794 780 aa5.82□□□□□ -1.48
NUP116YMR047C APE3P37302 537 aaKnown RBP5.82□□□□□ -1.48
NUP116YMR047C TRM44Q02648 567 aaKnown RBP5.82□□□□□ -1.48
NUP116YMR047C YIL092WP40497 633 aa5.81□□□□□ -1.48
NUP116YMR047C APL6P46682 809 aa5.81□□□□□ -1.48
NUP116YMR047C DOS2P54858 310 aa5.81□□□□□ -1.48
NUP116YMR047C RBA50Q04418 439 aa5.81□□□□□ -1.48
NUP116YMR047C NIT1P40447 199 aa5.81□□□□□ -1.48
NUP116YMR047C HPR1P17629 752 aaKnown RBP5.81□□□□□ -1.48
NUP116YMR047C NGR1P32831 672 aaKnown RBP5.81□□□□□ -1.48
NUP116YMR047C JJJ2P46997 583 aa5.81□□□□□ -1.48
NUP116YMR047C CSI1Q04368 295 aa5.81□□□□□ -1.48
NUP116YMR047C QCR6P00127 147 aa5.8□□□□□ -1.48
NUP116YMR047C NET1P47035 1189 aa5.8□□□□□ -1.48
NUP116YMR047C OSH3P38713 996 aaKnown RBP5.8□□□□□ -1.48
NUP116YMR047C YNL011CP53980 444 aa5.8□□□□□ -1.48
NUP116YMR047C ETT1Q08421 412 aaKnown RBP5.8□□□□□ -1.48
NUP116YMR047C CLC1P17891 233 aa5.79□□□□□ -1.48
NUP116YMR047C FUN12P39730 1002 aaKnown RBP5.79□□□□□ -1.48
NUP116YMR047C AIM21P40563 679 aa5.79□□□□□ -1.48
NUP116YMR047C PPM2Q08282 695 aa5.79□□□□□ -1.48
NUP116YMR047C AIM7Q12156 149 aa5.79□□□□□ -1.48
NUP116YMR047C DMA1P38823 416 aa5.79□□□□□ -1.48
NUP116YMR047C STV1P37296 890 aa5.78□□□□□ -1.48
NUP116YMR047C RVB2Q12464 471 aaKnown RBP5.78□□□□□ -1.48
NUP116YMR047C CBP1P07252 654 aa5.78□□□□□ -1.48
NUP116YMR047C HAL5P38970 855 aaKnown RBP5.78□□□□□ -1.48
NUP116YMR047C MPH3P0CE00 602 aa5.77□□□□□ -1.48
NUP116YMR047C YBR287WP38355 427 aa5.77□□□□□ -1.48
NUP116YMR047C IOC3P43596 787 aa5.77□□□□□ -1.48
NUP116YMR047C SUB1P54000 292 aaKnown RBP5.77□□□□□ -1.48
NUP116YMR047C TY3A-GQ12173 290 aa5.77□□□□□ -1.48
NUP116YMR047C TY3A-IQ99219 290 aa5.77□□□□□ -1.48
NUP116YMR047C SEC18P18759 758 aaKnown RBP5.77□□□□□ -1.49
NUP116YMR047C PER1P25625 357 aa5.77□□□□□ -1.49
NUP116YMR047C ATG36P46983 293 aa5.77□□□□□ -1.49
NUP116YMR047C KIN1P13185 1064 aa5.77□□□□□ -1.49
NUP116YMR047C RAD53P22216 821 aa5.77□□□□□ -1.49
NUP116YMR047C TOA1P32773 286 aa5.77□□□□□ -1.49
NUP116YMR047C SPR3P41901 512 aa5.77□□□□□ -1.49
NUP116YMR047C GAP1P19145 602 aaPredicted RBP5.76□□□□□ -1.49
NUP116YMR047C SPC110P32380 944 aa5.76□□□□□ -1.49
NUP116YMR047C TPS3P38426 1054 aaKnown RBP5.76□□□□□ -1.49
NUP116YMR047C PUS6P53294 404 aa5.76□□□□□ -1.49
NUP116YMR047C VPS4P52917 437 aa5.76□□□□□ -1.49
NUP116YMR047C RAD2P07276 1031 aa5.76□□□□□ -1.49
NUP116YMR047C PTK2P47116 818 aaKnown RBP5.76□□□□□ -1.49
NUP116YMR047C TOS4Q06266 489 aa5.76□□□□□ -1.49
NUP116YMR047C RLF2Q12495 606 aa5.76□□□□□ -1.49
NUP116YMR047C SPB4P25808 606 aaPredicted RBP5.75□□□□□ -1.49
NUP116YMR047C RPS7AP26786 190 aaKnown RBP5.75□□□□□ -1.49
NUP116YMR047C HIF1Q12373 385 aa5.75□□□□□ -1.49
NUP116YMR047C NHA1Q99271 985 aa5.75□□□□□ -1.49
NUP116YMR047C CDC16P09798 840 aa5.75□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms