RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W IKI3Q06706 1349 aaKnown RBP5.66□□□□□ -1.5
SSL1YLR005W BIO2P32451 375 aa5.66□□□□□ -1.5
SSL1YLR005W MRX12P47084 519 aa5.66□□□□□ -1.5
SSL1YLR005W MCM16Q12262 181 aa5.66□□□□□ -1.5
SSL1YLR005W PDR11P40550 1411 aa5.65□□□□□ -1.5
SSL1YLR005W GLY1P37303 387 aaKnown RBP5.65□□□□□ -1.51
SSL1YLR005W YJR098CP47139 656 aa5.65□□□□□ -1.51
SSL1YLR005W YNL108CP53929 270 aa5.65□□□□□ -1.51
SSL1YLR005W TCB1Q12466 1186 aa5.65□□□□□ -1.51
SSL1YLR005W STE6P12866 1290 aa5.64□□□□□ -1.51
SSL1YLR005W ACO2P39533 789 aa5.64□□□□□ -1.51
SSL1YLR005W YJL007CP47080 104 aa5.64□□□□□ -1.51
SSL1YLR005W SCW11P53189 542 aa5.64□□□□□ -1.51
SSL1YLR005W RIA1P53893 1110 aa5.64□□□□□ -1.51
SSL1YLR005W ISU1Q03020 165 aa5.64□□□□□ -1.51
SSL1YLR005W TY1A-BLQ12266 440 aa5.64□□□□□ -1.51
SSL1YLR005W SPT5P27692 1063 aaKnown RBP5.63□□□□□ -1.51
SSL1YLR005W YNR029CP53729 429 aaKnown RBP5.63□□□□□ -1.51
SSL1YLR005W UBP2Q01476 1272 aa5.63□□□□□ -1.51
SSL1YLR005W YIR007WP40566 764 aa5.62□□□□□ -1.51
SSL1YLR005W YMR074CQ04773 145 aa5.62□□□□□ -1.51
SSL1YLR005W ISR1Q06098 443 aaKnown RBP5.62□□□□□ -1.51
SSL1YLR005W RRP5Q05022 1729 aaKnown RBP5.61□□□□□ -1.51
SSL1YLR005W ENO2P00925 437 aaKnown RBP5.6□□□□□ -1.51
SSL1YLR005W SUP45P12385 437 aaKnown RBP5.6□□□□□ -1.51
SSL1YLR005W RAV1P47104 1357 aa5.6□□□□□ -1.51
SSL1YLR005W SOH1P38633 127 aa5.58□□□□□ -1.52
SSL1YLR005W OSH7P38755 437 aa5.58□□□□□ -1.52
SSL1YLR005W HAL5P38970 855 aaKnown RBP5.58□□□□□ -1.52
SSL1YLR005W APL6P46682 809 aa5.58□□□□□ -1.52
SSL1YLR005W DAT1P13483 248 aaKnown RBP5.57□□□□□ -1.52
SSL1YLR005W PAF1P38351 445 aa5.57□□□□□ -1.52
SSL1YLR005W BIM1P40013 344 aa5.57□□□□□ -1.52
SSL1YLR005W LEO1P38439 464 aa5.56□□□□□ -1.52
SSL1YLR005W DLD3P39976 496 aaKnown RBP5.56□□□□□ -1.52
SSL1YLR005W ATG32P40458 529 aa5.56□□□□□ -1.52
SSL1YLR005W IMH1Q06704 911 aaKnown RBP5.56□□□□□ -1.52
SSL1YLR005W WTM2Q12206 467 aa5.56□□□□□ -1.52
SSL1YLR005W SSM4P40318 1319 aa5.56□□□□□ -1.52
SSL1YLR005W TY3B-IQ7LHG5 1498 aaKnown RBP5.55□□□□□ -1.52
SSL1YLR005W EDE1P34216 1381 aa5.55□□□□□ -1.52
SSL1YLR005W ENT1Q12518 454 aa5.55□□□□□ -1.52
SSL1YLR005W UTR2P32623 467 aa5.55□□□□□ -1.52
SSL1YLR005W ROG3P43602 733 aa5.55□□□□□ -1.52
SSL1YLR005W TY4B-HP0C2J7 1802 aa5.54□□□□□ -1.52
SSL1YLR005W TY4B-JP47024 1803 aa5.54□□□□□ -1.52
SSL1YLR005W UTP7P40055 554 aaKnown RBP5.54□□□□□ -1.52
SSL1YLR005W ALD4P46367 519 aaKnown RBP5.54□□□□□ -1.52
SSL1YLR005W YPP1P46951 817 aa5.54□□□□□ -1.52
SSL1YLR005W RIM21P48565 533 aa5.54□□□□□ -1.52
SSL1YLR005W HPF1Q05164 967 aa5.54□□□□□ -1.52
SSL1YLR005W RTC1Q08281 1341 aa5.53□□□□□ -1.52
SSL1YLR005W TIF1P10081 395 aaKnown RBP5.53□□□□□ -1.52
SSL1YLR005W RDS2P19541 446 aaKnown RBP5.53□□□□□ -1.52
SSL1YLR005W NAP1P25293 417 aaKnown RBP5.53□□□□□ -1.52
SSL1YLR005W NAM8Q00539 523 aaKnown RBP5.53□□□□□ -1.52
SSL1YLR005W TY1A-MR1Q04215 440 aa5.53□□□□□ -1.52
SSL1YLR005W CAB1Q04430 367 aa5.53□□□□□ -1.52
SSL1YLR005W HDA3Q06623 655 aa5.53□□□□□ -1.52
SSL1YLR005W RAD9P14737 1309 aa5.52□□□□□ -1.53
SSL1YLR005W CDC19P00549 500 aaKnown RBP5.52□□□□□ -1.53
SSL1YLR005W RPP2BP02400 110 aaKnown RBP5.52□□□□□ -1.53
SSL1YLR005W SPT2P06843 333 aaPredicted RBP5.52□□□□□ -1.53
SSL1YLR005W YGR035CP53222 116 aa5.52□□□□□ -1.53
SSL1YLR005W CCP1P00431 361 aa5.51□□□□□ -1.53
SSL1YLR005W ENO1P00924 437 aaKnown RBP5.51□□□□□ -1.53
SSL1YLR005W UBP1P25037 809 aa5.51□□□□□ -1.53
SSL1YLR005W RTG2P32608 588 aaKnown RBP5.51□□□□□ -1.53
SSL1YLR005W TBS1P38114 1094 aa5.51□□□□□ -1.53
SSL1YLR005W ATG3P40344 310 aa5.51□□□□□ -1.53
SSL1YLR005W HGH1P48362 394 aaKnown RBP5.51□□□□□ -1.53
SSL1YLR005W CBC2Q08920 208 aaKnown RBP RIP-Chip data5.51□□□□□ -1.53not detected
SSL1YLR005W URB1P34241 1764 aaKnown RBP5.5□□□□□ -1.53
SSL1YLR005W DAL1P32375 460 aa5.5□□□□□ -1.53
SSL1YLR005W SSN3P39073 555 aa5.5□□□□□ -1.53
SSL1YLR005W RPL34BP40525 121 aaKnown RBP5.5□□□□□ -1.53
SSL1YLR005W DMA2P53924 522 aa5.49□□□□□ -1.53
SSL1YLR005W MRX10Q05648 414 aa5.49□□□□□ -1.53
SSL1YLR005W UTP13Q05946 817 aaKnown RBP5.49□□□□□ -1.53
SSL1YLR005W TRK2P28584 889 aa5.48□□□□□ -1.53
SSL1YLR005W SLX8P40072 274 aa5.48□□□□□ -1.53
SSL1YLR005W VTC4P47075 721 aa5.48□□□□□ -1.53
SSL1YLR005W FKS3Q04952 1785 aa5.48□□□□□ -1.53
SSL1YLR005W PRP45P28004 379 aaPredicted RBP5.47□□□□□ -1.53
SSL1YLR005W ALA1P40825 983 aaKnown RBP5.47□□□□□ -1.53
SSL1YLR005W NOP7P53261 605 aaKnown RBP5.47□□□□□ -1.53
SSL1YLR005W YPR204WQ08995 1032 aa5.47□□□□□ -1.53
SSL1YLR005W TY1A-DR3Q12441 440 aa5.47□□□□□ -1.53
SSL1YLR005W SLA1P32790 1244 aa5.46□□□□□ -1.54
SSL1YLR005W TAF5P38129 798 aa5.46□□□□□ -1.54
SSL1YLR005W CPS1P27614 576 aa5.45□□□□□ -1.54
SSL1YLR005W SUM1P46676 1062 aa5.45□□□□□ -1.54
SSL1YLR005W MSN5P52918 1224 aa5.45□□□□□ -1.54
SSL1YLR005W ROM2P51862 1356 aaKnown RBP5.45□□□□□ -1.54
SSL1YLR005W KTR7P40504 517 aa5.44□□□□□ -1.54
SSL1YLR005W CUZ1P53899 274 aa5.44□□□□□ -1.54
SSL1YLR005W PSK1P31374 1356 aa5.43□□□□□ -1.54
SSL1YLR005W ADE6P38972 1358 aaKnown RBP5.43□□□□□ -1.54
SSL1YLR005W SWI5P08153 709 aa5.43□□□□□ -1.54
SSL1YLR005W PDI1P17967 522 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 80.2 ms