RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W FPR3P38911 411 aaKnown RBP7.45□□□□□ -1.22
RPN11YFR004W EMP47P43555 445 aa7.45□□□□□ -1.22
RPN11YFR004W HGH1P48362 394 aaKnown RBP7.45□□□□□ -1.22
RPN11YFR004W SAS4Q04003 481 aa7.45□□□□□ -1.22
RPN11YFR004W SYF1Q04048 859 aaPredicted RBP7.45□□□□□ -1.22
RPN11YFR004W IOC4Q04213 475 aa7.45□□□□□ -1.22
RPN11YFR004W TRP5P00931 707 aaKnown RBP7.44□□□□□ -1.22
RPN11YFR004W UGA3P26370 528 aa7.44□□□□□ -1.22
RPN11YFR004W FRD1P32614 470 aaKnown RBP7.44□□□□□ -1.22
RPN11YFR004W YGR117CP53270 476 aa7.44□□□□□ -1.22
RPN11YFR004W MAK21Q12176 1025 aaKnown RBP7.44□□□□□ -1.22
RPN11YFR004W LDB19Q12502 818 aa7.44□□□□□ -1.22
RPN11YFR004W HTA1P04911 132 aaKnown RBP7.43□□□□□ -1.22
RPN11YFR004W HTA2P04912 132 aa7.43□□□□□ -1.22
RPN11YFR004W TPD3P31383 635 aa7.43□□□□□ -1.22
RPN11YFR004W CWC15Q03772 175 aaKnown RBP7.43□□□□□ -1.22
RPN11YFR004W HAT1Q12341 374 aa7.43□□□□□ -1.22
RPN11YFR004W HVG1P0CE11 249 aa7.42□□□□□ -1.22
RPN11YFR004W THI22Q06490 572 aa7.42□□□□□ -1.22
RPN11YFR004W YPR204WQ08995 1032 aa7.42□□□□□ -1.22
RPN11YFR004W IOC2Q12072 812 aa7.42□□□□□ -1.22
RPN11YFR004W LYS2P07702 1392 aa7.42□□□□□ -1.22
RPN11YFR004W BSD2P38356 321 aa7.41□□□□□ -1.22
RPN11YFR004W NCS6P53088 359 aa7.41□□□□□ -1.22
RPN11YFR004W YRB30P53107 440 aaPredicted RBP7.41□□□□□ -1.22
RPN11YFR004W TRM44Q02648 567 aaKnown RBP7.41□□□□□ -1.22
RPN11YFR004W COX6P00427 148 aa7.4□□□□□ -1.22
RPN11YFR004W DAL5P15365 543 aa7.4□□□□□ -1.22
RPN11YFR004W PRD1P25375 712 aa7.4□□□□□ -1.22
RPN11YFR004W GUT1P32190 709 aa7.4□□□□□ -1.22
RPN11YFR004W NAB6Q03735 1134 aaKnown RBP RIP-Chip data7.4□□□□□ -1.22not detected
RPN11YFR004W GSC2P40989 1895 aa7.39□□□□□ -1.23
RPN11YFR004W APL2P36000 726 aaPredicted RBP7.39□□□□□ -1.23
RPN11YFR004W VPS4P52917 437 aa7.39□□□□□ -1.23
RPN11YFR004W NSE3Q05541 303 aa7.39□□□□□ -1.23
RPN11YFR004W RAD2P07276 1031 aa7.38□□□□□ -1.23
RPN11YFR004W HPR1P17629 752 aaKnown RBP7.38□□□□□ -1.23
RPN11YFR004W STV1P37296 890 aa7.38□□□□□ -1.23
RPN11YFR004W HEF3P53978 1044 aaKnown RBP7.38□□□□□ -1.23
RPN11YFR004W RTT109Q07794 436 aa7.38□□□□□ -1.23
RPN11YFR004W RTG1P32607 177 aa7.37□□□□□ -1.23
RPN11YFR004W YNL050CP53952 270 aa7.37□□□□□ -1.23
RPN11YFR004W CRF1Q04930 467 aa7.37□□□□□ -1.23
RPN11YFR004W CSR2Q12734 1121 aa7.37□□□□□ -1.23
RPN11YFR004W VPS13Q07878 3144 aa7.37□□□□□ -1.23
RPN11YFR004W AFG2P32794 780 aa7.36□□□□□ -1.23
RPN11YFR004W MOT2P34909 587 aaKnown RBP7.36□□□□□ -1.23
RPN11YFR004W YIL092WP40497 633 aa7.36□□□□□ -1.23
RPN11YFR004W RRT6P53117 311 aaPredicted RBP7.36□□□□□ -1.23
RPN11YFR004W YNL035CP53962 389 aaKnown RBP7.36□□□□□ -1.23
RPN11YFR004W NOP8Q08287 484 aaPredicted RBP7.36□□□□□ -1.23
RPN11YFR004W PCS60P38137 543 aaKnown RBP RIP-Chip data7.35□□□□□ -1.23not detected
RPN11YFR004W YEL023CP39992 682 aa7.35□□□□□ -1.23
RPN11YFR004W YJL171CP46992 396 aa7.35□□□□□ -1.23
RPN11YFR004W ATF2P53296 535 aa7.35□□□□□ -1.23
RPN11YFR004W TFB3Q03290 321 aa7.35□□□□□ -1.23
RPN11YFR004W YML020WQ03722 664 aa7.35□□□□□ -1.23
RPN11YFR004W GAS5Q08193 484 aa7.35□□□□□ -1.23
RPN11YFR004W RRG1Q12167 365 aaPredicted RBP7.35□□□□□ -1.23
RPN11YFR004W KRE2P27809 442 aa7.34□□□□□ -1.23
RPN11YFR004W TFG1P41895 735 aaPredicted RBP7.34□□□□□ -1.23
RPN11YFR004W JIP4Q03361 876 aa7.34□□□□□ -1.23
RPN11YFR004W UBX2Q04228 584 aa7.34□□□□□ -1.23
RPN11YFR004W APE3P37302 537 aaKnown RBP7.33□□□□□ -1.24
RPN11YFR004W PTC4P38089 393 aa7.33□□□□□ -1.24
RPN11YFR004W RSC30P38781 883 aa7.33□□□□□ -1.24
RPN11YFR004W PNT1P38969 423 aa7.33□□□□□ -1.24
RPN11YFR004W VPS64Q03944 604 aa7.33□□□□□ -1.24
RPN11YFR004W PAM1P37304 830 aaKnown RBP7.32□□□□□ -1.24
RPN11YFR004W POL32P47110 350 aa7.32□□□□□ -1.24
RPN11YFR004W NCR1Q12200 1170 aa7.32□□□□□ -1.24
RPN11YFR004W DPH6Q12429 685 aa7.32□□□□□ -1.24
RPN11YFR004W FLO11P08640 1367 aa7.32□□□□□ -1.24
RPN11YFR004W IME2P32581 645 aa7.31□□□□□ -1.24
RPN11YFR004W OPY1P38271 328 aa7.31□□□□□ -1.24
RPN11YFR004W ZDS2P54786 942 aa7.31□□□□□ -1.24
RPN11YFR004W YDR090CQ03193 310 aa7.31□□□□□ -1.24
RPN11YFR004W SEC61P32915 480 aa7.3□□□□□ -1.24
RPN11YFR004W ICP55P40051 511 aa7.3□□□□□ -1.24
RPN11YFR004W PUF6Q04373 656 aaKnown RBP7.3□□□□□ -1.24
RPN11YFR004W AIR2Q12476 344 aaKnown RBP7.3□□□□□ -1.24
RPN11YFR004W CBP1P07252 654 aa7.29□□□□□ -1.24
RPN11YFR004W PKC1P24583 1151 aa7.29□□□□□ -1.24
RPN11YFR004W ZDS1P50111 915 aaKnown RBP7.29□□□□□ -1.24
RPN11YFR004W RBA50Q04418 439 aa7.29□□□□□ -1.24
RPN11YFR004W SUB2Q07478 446 aaKnown RBP7.29□□□□□ -1.24
RPN11YFR004W COQ4O13525 335 aa7.28□□□□□ -1.24
RPN11YFR004W MAL31P38156 614 aa7.28□□□□□ -1.24
RPN11YFR004W UBP14P38237 781 aaKnown RBP7.28□□□□□ -1.24
RPN11YFR004W YBR287WP38355 427 aa7.28□□□□□ -1.24
RPN11YFR004W SPL2P38839 148 aa7.28□□□□□ -1.24
RPN11YFR004W MAM1P40065 302 aa7.28□□□□□ -1.24
RPN11YFR004W SEN54Q02825 467 aaPredicted RBP7.28□□□□□ -1.24
RPN11YFR004W FCP1Q03254 732 aa7.28□□□□□ -1.24
RPN11YFR004W PKH1Q03407 766 aa7.28□□□□□ -1.24
RPN11YFR004W BMS1Q08965 1183 aaKnown RBP7.28□□□□□ -1.24
RPN11YFR004W GEF1P37020 779 aa7.27□□□□□ -1.25
RPN11YFR004W UTP7P40055 554 aaKnown RBP7.27□□□□□ -1.25
RPN11YFR004W DAN4P47179 1161 aa7.27□□□□□ -1.25
RPN11YFR004W RPT4P53549 437 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms