RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeastyeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMC1YFL008W SPT6P23615 1451 aaKnown RBP2.24□□□□□ -2.05
SMC1YFL008W LEU1P07264 779 aaKnown RBP2.24□□□□□ -2.05
SMC1YFL008W MIP1P15801 1254 aa2.24□□□□□ -2.05
SMC1YFL008W PHO87P25360 923 aa2.24□□□□□ -2.05
SMC1YFL008W DLD1P32891 587 aa2.24□□□□□ -2.05
SMC1YFL008W GLY1P37303 387 aaKnown RBP2.24□□□□□ -2.05
SMC1YFL008W RLF2Q12495 606 aa2.24□□□□□ -2.05
SMC1YFL008W HAP1P0CE41 1502 aa2.24□□□□□ -2.05
SMC1YFL008W DUR3P33413 735 aa2.24□□□□□ -2.05
SMC1YFL008W YBR197CP38306 217 aa2.24□□□□□ -2.05
SMC1YFL008W PUF6Q04373 656 aaKnown RBP2.24□□□□□ -2.05
SMC1YFL008W MRP10O75012 95 aa2.23□□□□□ -2.05
SMC1YFL008W SEN54Q02825 467 aaPredicted RBP2.23□□□□□ -2.05
SMC1YFL008W TOS4Q06266 489 aa2.23□□□□□ -2.05
SMC1YFL008W PDC6P26263 563 aaKnown RBP2.23□□□□□ -2.05
SMC1YFL008W MLP2P40457 1679 aa2.23□□□□□ -2.05
SMC1YFL008W NRD1P53617 575 aaKnown RBP RIP-Chip data2.22□□□□□ -2.05not detected
SMC1YFL008W YPR204WQ08995 1032 aa2.22□□□□□ -2.05
SMC1YFL008W PDR10P51533 1564 aa2.22□□□□□ -2.05
SMC1YFL008W RPS6AP0CX37 236 aaKnown RBP2.22□□□□□ -2.05
SMC1YFL008W RPS6BP0CX38 236 aaPredicted RBP2.22□□□□□ -2.05
SMC1YFL008W MKS1P34072 584 aa2.22□□□□□ -2.05
SMC1YFL008W MDJ1P35191 511 aa2.22□□□□□ -2.05
SMC1YFL008W AMN1P38285 549 aaPredicted RBP2.22□□□□□ -2.05
SMC1YFL008W ICP55P40051 511 aa2.22□□□□□ -2.05
SMC1YFL008W RGD2P43556 714 aa2.22□□□□□ -2.05
SMC1YFL008W ROG3P43602 733 aa2.22□□□□□ -2.05
SMC1YFL008W RRP15Q06511 250 aaPredicted RBP2.22□□□□□ -2.05
SMC1YFL008W NUP170P38181 1502 aa2.22□□□□□ -2.05
SMC1YFL008W PDI1P17967 522 aaKnown RBP2.22□□□□□ -2.05
SMC1YFL008W NTH2P35172 780 aa2.22□□□□□ -2.05
SMC1YFL008W MDJ2P42834 146 aa2.22□□□□□ -2.05
SMC1YFL008W YPP1P46951 817 aa2.22□□□□□ -2.05
SMC1YFL008W NCE103P53615 221 aa2.22□□□□□ -2.05
SMC1YFL008W YNR040WP53736 256 aa2.22□□□□□ -2.05
SMC1YFL008W UTP4Q06679 776 aaKnown RBP2.22□□□□□ -2.05
SMC1YFL008W SYT1Q06836 1226 aa2.22□□□□□ -2.05
SMC1YFL008W NOP8Q08287 484 aaPredicted RBP2.22□□□□□ -2.05
SMC1YFL008W TCB1Q12466 1186 aa2.22□□□□□ -2.05
SMC1YFL008W SBP1P10080 294 aaKnown RBP2.21□□□□□ -2.06
SMC1YFL008W ECM5Q03214 1411 aa2.21□□□□□ -2.06
SMC1YFL008W SPO14P36126 1683 aa2.21□□□□□ -2.06
SMC1YFL008W MLF3P32047 452 aa2.21□□□□□ -2.06
SMC1YFL008W ITC1P53125 1264 aa2.21□□□□□ -2.06
SMC1YFL008W CUZ1P53899 274 aa2.21□□□□□ -2.06
SMC1YFL008W LSO1Q3E827 93 aa2.21□□□□□ -2.06
SMC1YFL008W YCF1P39109 1515 aaKnown RBP2.21□□□□□ -2.06
SMC1YFL008W ESC1Q03661 1658 aaKnown RBP2.21□□□□□ -2.06
SMC1YFL008W MDS3P53094 1487 aa2.2□□□□□ -2.06
SMC1YFL008W IRE1P32361 1115 aa2.2□□□□□ -2.06
SMC1YFL008W JJJ3P47138 172 aa2.2□□□□□ -2.06
SMC1YFL008W LYS5P50113 272 aa2.2□□□□□ -2.06
SMC1YFL008W GAS4Q08271 471 aa2.2□□□□□ -2.06
SMC1YFL008W FRT1Q99332 602 aa2.2□□□□□ -2.06
SMC1YFL008W SIS2P36024 562 aa2.2□□□□□ -2.06
SMC1YFL008W UTP7P40055 554 aaKnown RBP2.2□□□□□ -2.06
SMC1YFL008W ALD4P46367 519 aaKnown RBP2.2□□□□□ -2.06
SMC1YFL008W ECM23Q02710 187 aa2.2□□□□□ -2.06
SMC1YFL008W RPL34BP40525 121 aaKnown RBP2.2□□□□□ -2.06
SMC1YFL008W NSG2P53898 299 aa2.2□□□□□ -2.06
SMC1YFL008W WHI5Q12416 295 aa2.2□□□□□ -2.06
SMC1YFL008W YPK9Q12697 1472 aa2.2□□□□□ -2.06
SMC1YFL008W MRPL33P20084 86 aa2.19□□□□□ -2.06
SMC1YFL008W RPO31P04051 1460 aa2.19□□□□□ -2.06
SMC1YFL008W YBT1P32386 1661 aa2.19□□□□□ -2.06
SMC1YFL008W HEM13P11353 328 aaKnown RBP2.19□□□□□ -2.06
SMC1YFL008W LSC2P53312 427 aa2.19□□□□□ -2.06
SMC1YFL008W BDS1Q08347 646 aa2.19□□□□□ -2.06
SMC1YFL008W YDR461C-AQ2V2P7 80 aa2.19□□□□□ -2.06
SMC1YFL008W YRF1-2P40105 1681 aa2.19□□□□□ -2.06
SMC1YFL008W VMA3P25515 160 aa2.19□□□□□ -2.06
SMC1YFL008W UTR2P32623 467 aa2.19□□□□□ -2.06
SMC1YFL008W TFA2P36145 328 aa2.19□□□□□ -2.06
SMC1YFL008W EMG1Q06287 252 aaKnown RBP2.19□□□□□ -2.06
SMC1YFL008W THI72Q08579 599 aa2.19□□□□□ -2.06
SMC1YFL008W HAP4P14064 554 aa2.18□□□□□ -2.06
SMC1YFL008W UBP15P50101 1230 aa2.18□□□□□ -2.06
SMC1YFL008W UBP2Q01476 1272 aa2.18□□□□□ -2.06
SMC1YFL008W TAF7Q05021 590 aa2.18□□□□□ -2.06
SMC1YFL008W ULS1Q08562 1619 aa2.18□□□□□ -2.06
SMC1YFL008W DIT1P21623 536 aa2.18□□□□□ -2.06
SMC1YFL008W RPB10P22139 70 aa2.18□□□□□ -2.06
SMC1YFL008W CHC1P22137 1653 aaKnown RBP2.18□□□□□ -2.06
SMC1YFL008W ARG82P07250 355 aa2.18□□□□□ -2.06
SMC1YFL008W CYT1P07143 309 aa2.17□□□□□ -2.06
SMC1YFL008W YER156CP40093 338 aaKnown RBP2.17□□□□□ -2.06
SMC1YFL008W RSC4Q02206 625 aa2.17□□□□□ -2.06
SMC1YFL008W IDI1P15496 288 aa2.17□□□□□ -2.06
SMC1YFL008W PRP5P21372 849 aaPredicted RBP2.17□□□□□ -2.06
SMC1YFL008W MSN1P22148 382 aa2.17□□□□□ -2.06
SMC1YFL008W MET4P32389 672 aa2.17□□□□□ -2.06
SMC1YFL008W CHD1P32657 1468 aa2.17□□□□□ -2.06
SMC1YFL008W CDC25P04821 1589 aa2.17□□□□□ -2.06
SMC1YFL008W RGP1P16664 663 aa2.16□□□□□ -2.06
SMC1YFL008W BSD2P38356 321 aa2.16□□□□□ -2.06
SMC1YFL008W SAP155P43612 1002 aa2.16□□□□□ -2.06
SMC1YFL008W TY1A-DR2Q03964 440 aaKnown RBP2.16□□□□□ -2.06
SMC1YFL008W Q0182Q9ZZW1 134 aa2.16□□□□□ -2.06
SMC1YFL008W RKR1Q04781 1562 aa2.16□□□□□ -2.06
SMC1YFL008W SCC2Q04002 1493 aa2.16□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 49.9 ms