RNA–Protein interactions for RNA: YDR335W

MSN5, Transcript of Karyopherin, yeastyeast

Gene MSN5, Length 3,675 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSN5YDR335W TY1B-DR1Q03855 1755 aa1.85□□□□□ -2.11
MSN5YDR335W TY2B-DR3Q07791 1770 aaKnown RBP1.85□□□□□ -2.11
MSN5YDR335W TY2B-OR1Q12113 1770 aa1.85□□□□□ -2.11
MSN5YDR335W TY2B-DR1Q12472 1770 aa1.85□□□□□ -2.11
MSN5YDR335W TY2B-OR2Q12501 1770 aa1.85□□□□□ -2.11
MSN5YDR335W ASF1P32447 279 aa1.85□□□□□ -2.11
MSN5YDR335W MET1P36150 593 aa1.85□□□□□ -2.11
MSN5YDR335W BUB1P41695 1021 aaKnown RBP RIP-Chip data1.85□□□□□ -2.11not detected
MSN5YDR335W LSC2P53312 427 aa1.85□□□□□ -2.11
MSN5YDR335W TY1A-DR3Q12441 440 aa1.85□□□□□ -2.11
MSN5YDR335W SEC20P28791 383 aa1.84□□□□□ -2.11
MSN5YDR335W UTR2P32623 467 aa1.84□□□□□ -2.11
MSN5YDR335W PEP12P32854 288 aa1.84□□□□□ -2.11
MSN5YDR335W MGE1P38523 228 aa1.84□□□□□ -2.11
MSN5YDR335W APL6P46682 809 aa1.84□□□□□ -2.11
MSN5YDR335W ACS2P52910 683 aaKnown RBP1.84□□□□□ -2.11
MSN5YDR335W SPO14P36126 1683 aa1.84□□□□□ -2.11
MSN5YDR335W RPP2BP02400 110 aaKnown RBP1.84□□□□□ -2.12
MSN5YDR335W MET22P32179 357 aa1.84□□□□□ -2.12
MSN5YDR335W TGL4P36165 910 aa1.84□□□□□ -2.12
MSN5YDR335W JSN1P47135 1091 aaKnown RBP RIP-Chip data1.84□□□□□ -2.12not detected
MSN5YDR335W UBX5Q06682 500 aa1.84□□□□□ -2.12
MSN5YDR335W DOP1Q03921 1698 aa1.84□□□□□ -2.12
MSN5YDR335W ATE1P16639 503 aa1.84□□□□□ -2.12
MSN5YDR335W RPA135P22138 1203 aaKnown RBP1.84□□□□□ -2.12
MSN5YDR335W ROM1P53046 1155 aa1.84□□□□□ -2.12
MSN5YDR335W SCW11P53189 542 aa1.84□□□□□ -2.12
MSN5YDR335W FAR11P53917 953 aa1.84□□□□□ -2.12
MSN5YDR335W FPR4Q06205 392 aaPredicted RBP1.84□□□□□ -2.12
MSN5YDR335W HDA3Q06623 655 aa1.84□□□□□ -2.12
MSN5YDR335W RPO21P04050 1733 aaKnown RBP1.83□□□□□ -2.12
MSN5YDR335W SUV3P32580 737 aa1.83□□□□□ -2.12
MSN5YDR335W NMD2P38798 1089 aaKnown RBP1.83□□□□□ -2.12
MSN5YDR335W SEN54Q02825 467 aaPredicted RBP1.83□□□□□ -2.12
MSN5YDR335W TCB1Q12466 1186 aa1.83□□□□□ -2.12
MSN5YDR335W YOL098CQ12496 1037 aa1.83□□□□□ -2.12
MSN5YDR335W YGR161W-CQ3E744 92 aa1.83□□□□□ -2.12
MSN5YDR335W KTR2P33550 425 aa1.83□□□□□ -2.12
MSN5YDR335W GLO3P38682 493 aaKnown RBP1.83□□□□□ -2.12
MSN5YDR335W YOL057WQ08225 711 aa1.83□□□□□ -2.12
MSN5YDR335W YRF1-1P0CX20 1796 aa1.83□□□□□ -2.12
MSN5YDR335W YRF1-5P0CX21 1796 aa1.83□□□□□ -2.12
MSN5YDR335W YRF1-8P0CX22 1796 aa1.83□□□□□ -2.12
MSN5YDR335W AFT1P22149 690 aa1.82□□□□□ -2.12
MSN5YDR335W MCM2P29469 868 aa1.82□□□□□ -2.12
MSN5YDR335W AHP1P38013 176 aaKnown RBP1.82□□□□□ -2.12
MSN5YDR335W FRA1Q07825 749 aa1.82□□□□□ -2.12
MSN5YDR335W UBP3Q01477 912 aaKnown RBP RIP-Chip data1.82□□□□□ -2.12not detected
MSN5YDR335W OPT2Q06593 877 aa1.82□□□□□ -2.12
MSN5YDR335W SWE1P32944 819 aa1.82□□□□□ -2.12
MSN5YDR335W BOI1P38041 980 aaKnown RBP1.82□□□□□ -2.12
MSN5YDR335W OCA5P38738 679 aa1.82□□□□□ -2.12
MSN5YDR335W YTA6P40328 754 aa1.82□□□□□ -2.12
MSN5YDR335W ATG36P46983 293 aa1.82□□□□□ -2.12
MSN5YDR335W TY2B-BQ12491 1770 aa1.82□□□□□ -2.12
MSN5YDR335W SHM1P37292 490 aaPredicted RBP1.81□□□□□ -2.12
MSN5YDR335W YEN1P40028 759 aa1.81□□□□□ -2.12
MSN5YDR335W ATG3P40344 310 aa1.81□□□□□ -2.12
MSN5YDR335W ZDS1P50111 915 aaKnown RBP1.81□□□□□ -2.12
MSN5YDR335W ALD3P54114 506 aa1.81□□□□□ -2.12
MSN5YDR335W POB3Q04636 552 aaKnown RBP1.81□□□□□ -2.12
MSN5YDR335W MET6P05694 767 aaKnown RBP1.81□□□□□ -2.12
MSN5YDR335W PRI2P20457 528 aa1.81□□□□□ -2.12
MSN5YDR335W MNN1P39106 762 aa1.81□□□□□ -2.12
MSN5YDR335W ERP2P39704 215 aa1.81□□□□□ -2.12
MSN5YDR335W OSW7P43611 510 aa1.81□□□□□ -2.12
MSN5YDR335W PUN1Q06991 263 aa1.81□□□□□ -2.12
MSN5YDR335W GIN4Q12263 1142 aa1.81□□□□□ -2.12
MSN5YDR335W KAR1P11927 433 aa1.81□□□□□ -2.12
MSN5YDR335W KIP3P53086 805 aaKnown RBP1.81□□□□□ -2.12
MSN5YDR335W SPR28Q04921 423 aa1.81□□□□□ -2.12
MSN5YDR335W ENT2Q05785 613 aa1.81□□□□□ -2.12
MSN5YDR335W FUR4P05316 633 aaKnown RBP1.8□□□□□ -2.12
MSN5YDR335W EMW1P42842 904 aaKnown RBP1.8□□□□□ -2.12
MSN5YDR335W AAD14P42884 376 aa1.8□□□□□ -2.12
MSN5YDR335W UBP2Q01476 1272 aa1.8□□□□□ -2.12
MSN5YDR335W YMR265CQ03508 461 aaKnown RBP1.8□□□□□ -2.12
MSN5YDR335W YRF1-2P40105 1681 aa1.8□□□□□ -2.12
MSN5YDR335W RPB10P22139 70 aa1.8□□□□□ -2.12
MSN5YDR335W BOL3P39724 118 aa1.8□□□□□ -2.12
MSN5YDR335W YGR035CP53222 116 aa1.8□□□□□ -2.12
MSN5YDR335W MSC6Q08818 692 aaKnown RBP1.8□□□□□ -2.12
MSN5YDR335W TY1B-DR3Q99231 1755 aa1.8□□□□□ -2.12
MSN5YDR335W YBL086CP38177 466 aa1.8□□□□□ -2.12
MSN5YDR335W PMC1P38929 1173 aaPredicted RBP1.8□□□□□ -2.12
MSN5YDR335W YPP1P46951 817 aa1.8□□□□□ -2.12
MSN5YDR335W ALG12P53730 551 aa1.8□□□□□ -2.12
MSN5YDR335W NAM8Q00539 523 aaKnown RBP1.8□□□□□ -2.12
MSN5YDR335W TOS4Q06266 489 aa1.8□□□□□ -2.12
MSN5YDR335W NYV1Q12255 253 aa1.8□□□□□ -2.12
MSN5YDR335W SWI5P08153 709 aa1.79□□□□□ -2.12
MSN5YDR335W CIT2P08679 460 aa1.79□□□□□ -2.12
MSN5YDR335W SSB1P11484 613 aaKnown RBP1.79□□□□□ -2.12
MSN5YDR335W SSB2P40150 613 aaKnown RBP1.79□□□□□ -2.12
MSN5YDR335W FYV10P40492 516 aa1.79□□□□□ -2.12
MSN5YDR335W NUP85P46673 744 aa1.79□□□□□ -2.12
MSN5YDR335W DAS1P47005 663 aa1.79□□□□□ -2.12
MSN5YDR335W WTM2Q12206 467 aa1.79□□□□□ -2.12
MSN5YDR335W GEA2P39993 1459 aaKnown RBP1.79□□□□□ -2.12
MSN5YDR335W YEF3P16521 1044 aaKnown RBP1.79□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms