RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W FLO11P08640 1367 aa7.45□□□□□ -1.22
SHP1YBL058W ICP55P40051 511 aa7.44□□□□□ -1.22
SHP1YBL058W RPT4P53549 437 aaKnown RBP7.44□□□□□ -1.22
SHP1YBL058W DNM1P54861 757 aa7.44□□□□□ -1.22
SHP1YBL058W THI22Q06490 572 aa7.44□□□□□ -1.22
SHP1YBL058W SWI1P09547 1314 aa7.44□□□□□ -1.22
SHP1YBL058W PCS60P38137 543 aaKnown RBP RIP-Chip data7.43□□□□□ -1.22not detected
SHP1YBL058W RSC30P38781 883 aa7.43□□□□□ -1.22
SHP1YBL058W SPL2P38839 148 aa7.43□□□□□ -1.22
SHP1YBL058W YJR008WP47085 338 aa7.43□□□□□ -1.22
SHP1YBL058W RTT109Q07794 436 aa7.43□□□□□ -1.22
SHP1YBL058W CSR2Q12734 1121 aa7.43□□□□□ -1.22
SHP1YBL058W MOT2P34909 587 aaKnown RBP7.42□□□□□ -1.22
SHP1YBL058W YAP5P40574 245 aa7.42□□□□□ -1.22
SHP1YBL058W SEN54Q02825 467 aaPredicted RBP7.42□□□□□ -1.22
SHP1YBL058W PIB1Q06651 286 aa7.42□□□□□ -1.22
SHP1YBL058W BMT6Q12291 365 aa7.42□□□□□ -1.22
SHP1YBL058W CBP1P07252 654 aa7.41□□□□□ -1.22
SHP1YBL058W GYP7P48365 746 aa7.41□□□□□ -1.22
SHP1YBL058W MGM1P32266 881 aa7.4□□□□□ -1.22
SHP1YBL058W NUP133P36161 1157 aa7.4□□□□□ -1.22
SHP1YBL058W APE3P37302 537 aaKnown RBP7.4□□□□□ -1.22
SHP1YBL058W CST6P40535 587 aa7.4□□□□□ -1.22
SHP1YBL058W MPP10P47083 593 aaKnown RBP7.4□□□□□ -1.22
SHP1YBL058W PRP42Q03776 544 aaKnown RBP7.4□□□□□ -1.22
SHP1YBL058W TOS4Q06266 489 aa7.4□□□□□ -1.22
SHP1YBL058W THI3Q07471 609 aa7.4□□□□□ -1.22
SHP1YBL058W SAC3P46674 1301 aa7.4□□□□□ -1.22
SHP1YBL058W NGR1P32831 672 aaKnown RBP7.39□□□□□ -1.23
SHP1YBL058W PAM1P37304 830 aaKnown RBP7.39□□□□□ -1.23
SHP1YBL058W YDR306CQ06640 478 aa7.39□□□□□ -1.23
SHP1YBL058W IOC2Q12072 812 aa7.39□□□□□ -1.23
SHP1YBL058W SET1P38827 1080 aaKnown RBP7.38□□□□□ -1.23
SHP1YBL058W UTP7P40055 554 aaKnown RBP7.38□□□□□ -1.23
SHP1YBL058W ITC1P53125 1264 aa7.38□□□□□ -1.23
SHP1YBL058W SRT1Q03175 343 aa7.38□□□□□ -1.23
SHP1YBL058W RBA50Q04418 439 aa7.38□□□□□ -1.23
SHP1YBL058W LDB19Q12502 818 aa7.38□□□□□ -1.23
SHP1YBL058W RPS7AP26786 190 aaKnown RBP7.37□□□□□ -1.23
SHP1YBL058W HEF3P53978 1044 aaKnown RBP7.37□□□□□ -1.23
SHP1YBL058W IRC4Q03036 179 aa7.37□□□□□ -1.23
SHP1YBL058W MRP7P12687 371 aa7.36□□□□□ -1.23
SHP1YBL058W LCB1P25045 558 aaKnown RBP7.36□□□□□ -1.23
SHP1YBL058W MTC3P53077 123 aa7.36□□□□□ -1.23
SHP1YBL058W YGR122WP53272 402 aa7.36□□□□□ -1.23
SHP1YBL058W ACK1Q07622 623 aaPredicted RBP7.36□□□□□ -1.23
SHP1YBL058W PSF3Q12146 194 aa7.36□□□□□ -1.23
SHP1YBL058W PSH1Q12161 406 aa7.36□□□□□ -1.23
SHP1YBL058W ARG82P07250 355 aa7.35□□□□□ -1.23
SHP1YBL058W GAL2P13181 574 aa7.35□□□□□ -1.23
SHP1YBL058W TPD3P31383 635 aa7.35□□□□□ -1.23
SHP1YBL058W MTC5Q03897 1148 aa7.35□□□□□ -1.23
SHP1YBL058W RAM2P29703 316 aa7.34□□□□□ -1.23
SHP1YBL058W NUG1P40010 520 aaKnown RBP7.34□□□□□ -1.23
SHP1YBL058W NIT1P40447 199 aa7.34□□□□□ -1.23
SHP1YBL058W HXT10P43581 546 aa7.34□□□□□ -1.23
SHP1YBL058W DUR1,2P32528 1835 aaKnown RBP7.34□□□□□ -1.24
SHP1YBL058W SUP35P05453 685 aaKnown RBP7.33□□□□□ -1.24
SHP1YBL058W SWC3P31376 625 aa7.33□□□□□ -1.24
SHP1YBL058W SRC1Q03707 834 aa7.33□□□□□ -1.24
SHP1YBL058W YDL144CQ07589 356 aa7.32□□□□□ -1.24
SHP1YBL058W WRS1Q12109 432 aaKnown RBP7.32□□□□□ -1.24
SHP1YBL058W RPT3P33298 428 aaKnown RBP7.3□□□□□ -1.24
SHP1YBL058W ASH1P34233 588 aa7.3□□□□□ -1.24
SHP1YBL058W SPR3P41901 512 aa7.3□□□□□ -1.24
SHP1YBL058W ULI1P43604 169 aa7.3□□□□□ -1.24
SHP1YBL058W JJJ2P46997 583 aa7.3□□□□□ -1.24
SHP1YBL058W JIP4Q03361 876 aa7.3□□□□□ -1.24
SHP1YBL058W PEX29Q03370 554 aa7.3□□□□□ -1.24
SHP1YBL058W VPS13Q07878 3144 aa7.3□□□□□ -1.24
SHP1YBL058W RAD24P32641 659 aa7.29□□□□□ -1.24
SHP1YBL058W LEO1P38439 464 aa7.29□□□□□ -1.24
SHP1YBL058W YLR225CQ05948 407 aaKnown RBP7.29□□□□□ -1.24
SHP1YBL058W SGD1Q06132 899 aa7.29□□□□□ -1.24
SHP1YBL058W ADR1P07248 1323 aa7.28□□□□□ -1.24
SHP1YBL058W PFK2P16862 959 aaKnown RBP RIP-Chip data7.28□□□□□ -1.24not detected
SHP1YBL058W UBP12P39538 1254 aa7.28□□□□□ -1.24
SHP1YBL058W SNU66Q12420 587 aaPredicted RBP7.28□□□□□ -1.24
SHP1YBL058W MAL31P38156 614 aa7.27□□□□□ -1.25
SHP1YBL058W KEL1P38853 1164 aaKnown RBP7.27□□□□□ -1.25
SHP1YBL058W GIN4Q12263 1142 aa7.27□□□□□ -1.25
SHP1YBL058W YFH7P43591 353 aa7.26□□□□□ -1.25
SHP1YBL058W PUS6P53294 404 aa7.26□□□□□ -1.25
SHP1YBL058W PPM2Q08282 695 aa7.26□□□□□ -1.25
SHP1YBL058W SPB4P25808 606 aaPredicted RBP7.25□□□□□ -1.25
SHP1YBL058W TPS3P38426 1054 aaKnown RBP7.25□□□□□ -1.25
SHP1YBL058W NET1P47035 1189 aa7.25□□□□□ -1.25
SHP1YBL058W VPS70P47161 811 aa7.25□□□□□ -1.25
SHP1YBL058W NOP8Q08287 484 aaPredicted RBP7.25□□□□□ -1.25
SHP1YBL058W MAK11P20484 414 aaKnown RBP7.24□□□□□ -1.25
SHP1YBL058W SLA1P32790 1244 aa7.24□□□□□ -1.25
SHP1YBL058W BOI2P39969 1040 aa7.24□□□□□ -1.25
SHP1YBL058W RAD53P22216 821 aa7.23□□□□□ -1.25
SHP1YBL058W PAH1P32567 862 aa7.23□□□□□ -1.25
SHP1YBL058W YIR042CP40586 236 aa7.23□□□□□ -1.25
SHP1YBL058W SUI2P20459 304 aaKnown RBP7.22□□□□□ -1.25
SHP1YBL058W IXR1P33417 597 aa7.22□□□□□ -1.25
SHP1YBL058W PMA1P05030 918 aaKnown RBP7.21□□□□□ -1.26
SHP1YBL058W FBP1P09201 348 aa7.21□□□□□ -1.26
SHP1YBL058W SNF3P10870 884 aa7.21□□□□□ -1.26
Retrieved 100 of 5,963 RNA–protein pairs in 85 ms