RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 ZMYM3Q14202 1370 aa9.83□□□□□ -0.84
TCF4-249ENST00000625716 PLXNC1O60486 1568 aa9.83□□□□□ -0.84
TCF4-249ENST00000625716 WASHC2CQ9Y4E1 1318 aa9.82□□□□□ -0.84
TCF4-249ENST00000625716 UHRF1BP1Q6BDS2 1440 aa9.82□□□□□ -0.84
TCF4-249ENST00000625716 FGD6Q6ZV73 1430 aa9.82□□□□□ -0.84
TCF4-249ENST00000625716 PTPN23Q9H3S7 1636 aa9.82□□□□□ -0.84
TCF4-249ENST00000625716 RRP7BPQ9NSQ0 103 aa9.81□□□□□ -0.84
TCF4-249ENST00000625716 NCKAP5LQ9HCH0 1330 aa9.81□□□□□ -0.84
TCF4-249ENST00000625716 CHIC2Q9UKJ5 165 aa9.8□□□□□ -0.84
TCF4-249ENST00000625716 AXIN2Q9Y2T1 843 aa9.8□□□□□ -0.84
TCF4-249ENST00000625716 C3P01024 1663 aa9.8□□□□□ -0.84
TCF4-249ENST00000625716 PREX1Q8TCU6 1659 aa9.8□□□□□ -0.84
TCF4-249ENST00000625716 MAST1Q9Y2H9 1570 aa9.8□□□□□ -0.84
TCF4-249ENST00000625716 LSM11P83369 360 aaKnown RBP eCLIP9.79□□□□□ -0.84
TCF4-249ENST00000625716 ANKRD13DQ6ZTN6 518 aa9.79□□□□□ -0.84
TCF4-249ENST00000625716 PPARGC1BQ86YN6 1023 aaKnown RBP9.79□□□□□ -0.84
TCF4-249ENST00000625716 RYDENQ9NUL5 291 aaKnown RBP9.79□□□□□ -0.84
TCF4-249ENST00000625716 CLTCQ00610 1675 aaKnown RBP9.79□□□□□ -0.84
TCF4-249ENST00000625716 ABCC5O15440 1437 aa9.79□□□□□ -0.84
TCF4-249ENST00000625716 DAPK1P53355 1430 aa9.79□□□□□ -0.84
TCF4-249ENST00000625716 NPATQ14207 1427 aa9.79□□□□□ -0.84
TCF4-249ENST00000625716 TCOF1Q13428 1488 aaKnown RBP9.79□□□□□ -0.84
TCF4-249ENST00000625716 ANKRD30AQ9BXX3 1397 aa9.78□□□□□ -0.84
TCF4-249ENST00000625716 KIF15Q9NS87 1388 aa9.78□□□□□ -0.84
TCF4-249ENST00000625716 MROH2AA6NES4 1674 aa9.78□□□□□ -0.84
TCF4-249ENST00000625716 SHANK2Q9UPX8 1470 aa9.78□□□□□ -0.84
TCF4-249ENST00000625716 DUOX2Q9NRD8 1548 aa9.77□□□□□ -0.84
TCF4-249ENST00000625716 SETD1BQ9UPS6 1966 aaKnown RBP9.76□□□□□ -0.85
TCF4-249ENST00000625716 DNMT1P26358 1616 aaKnown RBP9.76□□□□□ -0.85
TCF4-249ENST00000625716 OXER1Q8TDS5 423 aa9.76□□□□□ -0.85
TCF4-249ENST00000625716 RNF166Q96A37 237 aaPredicted RBP9.76□□□□□ -0.85
TCF4-249ENST00000625716 KDM5DQ9BY66 1539 aa9.76□□□□□ -0.85
TCF4-249ENST00000625716 FAM135AQ9P2D6 1515 aa9.76□□□□□ -0.85
TCF4-249ENST00000625716 PTPRKQ15262 1439 aa9.75□□□□□ -0.85
TCF4-249ENST00000625716 PBX2P40425 430 aa9.75□□□□□ -0.85
TCF4-249ENST00000625716 KANK1Q14678 1352 aa9.75□□□□□ -0.85
TCF4-249ENST00000625716 ERBINQ96RT1 1412 aa9.74□□□□□ -0.85
TCF4-249ENST00000625716 ITGAEP38570 1179 aa9.74□□□□□ -0.85
TCF4-249ENST00000625716 PPP1R15BQ5SWA1 713 aa9.74□□□□□ -0.85
TCF4-249ENST00000625716 FBXO31Q5XUX0 539 aaPredicted RBP9.74□□□□□ -0.85
TCF4-249ENST00000625716 EIF2AK4Q9P2K8 1649 aaKnown RBP9.74□□□□□ -0.85
TCF4-249ENST00000625716 CROCC2H7BZ55 1655 aa9.73□□□□□ -0.85
TCF4-249ENST00000625716 TNRQ92752 1358 aa9.73□□□□□ -0.85
TCF4-249ENST00000625716 NCOA1Q15788 1441 aa9.73□□□□□ -0.85
TCF4-249ENST00000625716 PZPP20742 1482 aa9.72□□□□□ -0.85
TCF4-249ENST00000625716 PDE4AP27815 886 aa9.72□□□□□ -0.85
TCF4-249ENST00000625716 UPF1Q92900 1129 aaKnown RBP eCLIP9.72□□□□□ -0.85
TCF4-249ENST00000625716 RNF17Q9BXT8 1623 aaKnown RBP9.71□□□□□ -0.85
TCF4-249ENST00000625716 CADPS2Q86UW7 1296 aa9.71□□□□□ -0.86
TCF4-249ENST00000625716 ABCC3O15438 1527 aa9.71□□□□□ -0.86
TCF4-249ENST00000625716 PSDA5PKW4 1024 aaPredicted RBP9.7□□□□□ -0.86
TCF4-249ENST00000625716 ARHGAP33O14559 1287 aa9.7□□□□□ -0.86
TCF4-249ENST00000625716 TBC1D12O60347 775 aa9.7□□□□□ -0.86
TCF4-249ENST00000625716 THEMISQ8N1K5 641 aaPredicted RBP9.7□□□□□ -0.86
TCF4-249ENST00000625716 ADGRL2O95490 1459 aa9.7□□□□□ -0.86
TCF4-249ENST00000625716 CAMSAP1Q5T5Y3 1602 aa9.7□□□□□ -0.86
TCF4-249ENST00000625716 ZC3H13Q5T200 1668 aaKnown RBP9.7□□□□□ -0.86
TCF4-249ENST00000625716 A2ML1A8K2U0 1454 aa9.69□□□□□ -0.86
TCF4-249ENST00000625716 PTPRTO14522 1441 aa9.69□□□□□ -0.86
TCF4-249ENST00000625716 PSEN2P49810 448 aa9.69□□□□□ -0.86
TCF4-249ENST00000625716 DMRTA1Q5VZB9 504 aa9.69□□□□□ -0.86
TCF4-249ENST00000625716 MYO3AQ8NEV4 1616 aa9.69□□□□□ -0.86
TCF4-249ENST00000625716 LARP6Q9BRS8 491 aaKnown RBP9.69□□□□□ -0.86
TCF4-249ENST00000625716 CEP170BQ9Y4F5 1589 aaPredicted RBP9.69□□□□□ -0.86
TCF4-249ENST00000625716 ANKRD50Q9ULJ7 1429 aa9.68□□□□□ -0.86
TCF4-249ENST00000625716 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.68□□□□□ -0.86
TCF4-249ENST00000625716 PTGER2P43116 358 aa9.68□□□□□ -0.86
TCF4-249ENST00000625716 MFSD10Q14728 455 aa9.68□□□□□ -0.86
TCF4-249ENST00000625716 NLRP1Q9C000 1473 aa9.67□□□□□ -0.86
TCF4-249ENST00000625716 ANKLE2Q86XL3 938 aa9.67□□□□□ -0.86
TCF4-249ENST00000625716 CERKQ8TCT0 537 aa9.67□□□□□ -0.86
TCF4-249ENST00000625716 FBXO41Q8TF61 875 aa9.67□□□□□ -0.86
TCF4-249ENST00000625716 ZNF142P52746 1687 aaPredicted RBP9.67□□□□□ -0.86
TCF4-249ENST00000625716 PRDM15P57071 1507 aaPredicted RBP9.66□□□□□ -0.86
TCF4-249ENST00000625716 PLA2R1Q13018 1463 aa9.66□□□□□ -0.86
TCF4-249ENST00000625716 ROCK1Q13464 1354 aa9.66□□□□□ -0.86
TCF4-249ENST00000625716 STRCQ7RTU9 1775 aa9.66□□□□□ -0.86
TCF4-249ENST00000625716 MROH1Q8NDA8 1641 aa9.66□□□□□ -0.86
TCF4-249ENST00000625716 ERVK-7P63135 1459 aa9.66□□□□□ -0.86
TCF4-249ENST00000625716 ARHGAP31Q2M1Z3 1444 aa9.65□□□□□ -0.86
TCF4-249ENST00000625716 PPP4R3BQ5MIZ7 849 aa9.65□□□□□ -0.86
TCF4-249ENST00000625716 ADGRD1Q6QNK2 874 aa9.65□□□□□ -0.86
TCF4-249ENST00000625716 ANO8Q9HCE9 1232 aaPredicted RBP9.65□□□□□ -0.86
TCF4-249ENST00000625716 UGGT1Q9NYU2 1555 aa9.65□□□□□ -0.86
TCF4-249ENST00000625716 CEP152O94986 1710 aa9.65□□□□□ -0.87
TCF4-249ENST00000625716 SPATA31D1Q6ZQQ2 1576 aa9.64□□□□□ -0.87
TCF4-249ENST00000625716 DDX27Q96GQ7 796 aaKnown RBP9.64□□□□□ -0.87
TCF4-249ENST00000625716 EMILIN3Q9NT22 766 aa9.64□□□□□ -0.87
TCF4-249ENST00000625716 DEPDC5O75140 1603 aa9.64□□□□□ -0.87
TCF4-249ENST00000625716 HRO43593 1189 aa9.63□□□□□ -0.87
TCF4-249ENST00000625716 RRBP1Q9P2E9 1410 aaKnown RBP9.63□□□□□ -0.87
TCF4-249ENST00000625716 LMTK2Q8IWU2 1503 aa9.62□□□□□ -0.87
TCF4-249ENST00000625716 EID1Q9Y6B2 187 aa9.62□□□□□ -0.87
TCF4-249ENST00000625716 NUP155O75694 1391 aa9.62□□□□□ -0.87
TCF4-249ENST00000625716 FOSBP53539 338 aa9.61□□□□□ -0.87
TCF4-249ENST00000625716 SLC52A1Q9NWF4 448 aa9.61□□□□□ -0.87
TCF4-249ENST00000625716 VWDEQ8N2E2 1590 aa9.61□□□□□ -0.87
TCF4-249ENST00000625716 ZNF335Q9H4Z2 1342 aaPredicted RBP9.6□□□□□ -0.87
TCF4-249ENST00000625716 TK2O00142 265 aa9.6□□□□□ -0.87
TCF4-249ENST00000625716 EVI5O60447 810 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms