RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 NUP155O75694 1391 aa16.49■□□□□ 0.23
TOP3A-210ENST00000580713 NRXN3Q9Y4C0 1643 aa16.48■□□□□ 0.23
TOP3A-210ENST00000580713 NALCNQ8IZF0 1738 aa16.45■□□□□ 0.22
TOP3A-210ENST00000580713 GJD4Q96KN9 370 aaPredicted RBP16.45■□□□□ 0.22
TOP3A-210ENST00000580713 IQGAP3Q86VI3 1631 aa16.44■□□□□ 0.22
TOP3A-210ENST00000580713 SF3B2Q13435 895 aaKnown RBP16.43■□□□□ 0.22
TOP3A-210ENST00000580713 CACNB1Q02641 598 aaPredicted RBP16.42■□□□□ 0.22
TOP3A-210ENST00000580713 DEFB132Q7Z7B7 95 aa16.42■□□□□ 0.22
TOP3A-210ENST00000580713 ESCO1Q5FWF5 840 aa16.41■□□□□ 0.22
TOP3A-210ENST00000580713 EP400Q96L91 3159 aa16.41■□□□□ 0.22
TOP3A-210ENST00000580713 NPHP3Q7Z494 1330 aa16.41■□□□□ 0.22
TOP3A-210ENST00000580713 BCL9LQ86UU0 1499 aa16.41■□□□□ 0.22
TOP3A-210ENST00000580713 BLMP54132 1417 aaPredicted RBP16.4■□□□□ 0.22
TOP3A-210ENST00000580713 ITGAEP38570 1179 aa16.4■□□□□ 0.22
TOP3A-210ENST00000580713 XPCQ01831 940 aaPredicted RBP16.4■□□□□ 0.22
TOP3A-210ENST00000580713 LAMC1P11047 1609 aa16.39■□□□□ 0.21
TOP3A-210ENST00000580713 MYOM2P54296 1465 aa16.39■□□□□ 0.21
TOP3A-210ENST00000580713 ROCK1Q13464 1354 aa16.38■□□□□ 0.21
TOP3A-210ENST00000580713 ROBO2Q9HCK4 1378 aa16.38■□□□□ 0.21
TOP3A-210ENST00000580713 FOXO3O43524 673 aa16.37■□□□□ 0.21
TOP3A-210ENST00000580713 UNC5CLQ8IV45 518 aa16.37■□□□□ 0.21
TOP3A-210ENST00000580713 COL22A1Q8NFW1 1626 aaPredicted RBP16.37■□□□□ 0.21
TOP3A-210ENST00000580713 VGFO15240 615 aaPredicted RBP16.35■□□□□ 0.21
TOP3A-210ENST00000580713 SPHKAPQ2M3C7 1700 aa16.35■□□□□ 0.21
TOP3A-210ENST00000580713 NEXMIFQ5QGS0 1516 aa16.35■□□□□ 0.21
TOP3A-210ENST00000580713 RALGAPBQ86X10 1494 aa16.34■□□□□ 0.21
TOP3A-210ENST00000580713 NUTM2FA1L443 756 aa16.33■□□□□ 0.2
TOP3A-210ENST00000580713 PSDA5PKW4 1024 aaPredicted RBP16.33■□□□□ 0.2
TOP3A-210ENST00000580713 SEPT12Q8IYM1 358 aa16.33■□□□□ 0.2
TOP3A-210ENST00000580713 CCDC9Q9Y3X0 531 aaKnown RBP16.33■□□□□ 0.2
TOP3A-210ENST00000580713 HFM1A2PYH4 1435 aa16.32■□□□□ 0.2
TOP3A-210ENST00000580713 SLC4A2P04920 1241 aa16.32■□□□□ 0.2
TOP3A-210ENST00000580713 LRPPRCP42704 1394 aaKnown RBP16.32■□□□□ 0.2
TOP3A-210ENST00000580713 HAP1P54257 671 aaPredicted RBP16.32■□□□□ 0.2
TOP3A-210ENST00000580713 PXDNQ92626 1479 aa16.31■□□□□ 0.2
TOP3A-210ENST00000580713 PLEKHG5O94827 1062 aa16.3■□□□□ 0.2
TOP3A-210ENST00000580713 MARF1Q9Y4F3 1742 aaKnown RBP16.3■□□□□ 0.2
TOP3A-210ENST00000580713 CLTCL1P53675 1640 aa16.3■□□□□ 0.2
TOP3A-210ENST00000580713 GLI3P10071 1580 aa16.3■□□□□ 0.2
TOP3A-210ENST00000580713 A0A0G2JS52 829 aa16.29■□□□□ 0.2
TOP3A-210ENST00000580713 BAG6P46379 1132 aa16.29■□□□□ 0.2
TOP3A-210ENST00000580713 MYT1Q01538 1121 aa16.29■□□□□ 0.2
TOP3A-210ENST00000580713 C1QBPQ07021 282 aaKnown RBP16.29■□□□□ 0.2
TOP3A-210ENST00000580713 LRP5O75197 1615 aa16.28■□□□□ 0.2
TOP3A-210ENST00000580713 HRCP23327 699 aa16.28■□□□□ 0.2
TOP3A-210ENST00000580713 KRT27Q7Z3Y8 459 aa16.28■□□□□ 0.2
TOP3A-210ENST00000580713 SLIT2O94813 1529 aa16.28■□□□□ 0.2
TOP3A-210ENST00000580713 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.27■□□□□ 0.19
TOP3A-210ENST00000580713 SPATA31A3Q5VYP0 1347 aa16.26■□□□□ 0.19
TOP3A-210ENST00000580713 VPS72Q15906 364 aa16.26■□□□□ 0.19
TOP3A-210ENST00000580713 STK26Q9P289 416 aa16.26■□□□□ 0.19
TOP3A-210ENST00000580713 KIF1BO60333 1816 aa16.26■□□□□ 0.19
TOP3A-210ENST00000580713 BRWD3Q6RI45 1802 aa16.26■□□□□ 0.19
TOP3A-210ENST00000580713 KRT28Q7Z3Y7 464 aa16.25■□□□□ 0.19
TOP3A-210ENST00000580713 NAIPQ13075 1403 aa16.25■□□□□ 0.19
TOP3A-210ENST00000580713 PRAG1Q86YV5 1406 aa16.25■□□□□ 0.19
TOP3A-210ENST00000580713 CDC42BPGQ6DT37 1551 aa16.25■□□□□ 0.19
TOP3A-210ENST00000580713 RPGRIP1LQ68CZ1 1315 aa16.24■□□□□ 0.19
TOP3A-210ENST00000580713 WAPLQ7Z5K2 1190 aa16.24■□□□□ 0.19
TOP3A-210ENST00000580713 LMOD2Q6P5Q4 547 aa16.23■□□□□ 0.19
TOP3A-210ENST00000580713 CABLES1Q8TDN4 633 aa16.23■□□□□ 0.19
TOP3A-210ENST00000580713 U3KPZ7 1027 aaPredicted RBP16.23■□□□□ 0.19
TOP3A-210ENST00000580713 FOXD4L1Q9NU39 408 aa16.22■□□□□ 0.19
TOP3A-210ENST00000580713 ONECUT3O60422 494 aaPredicted RBP16.21■□□□□ 0.19
TOP3A-210ENST00000580713 EN1Q05925 392 aaPredicted RBP16.21■□□□□ 0.19
TOP3A-210ENST00000580713 R3HDM1Q15032 1099 aaKnown RBP16.21■□□□□ 0.19
TOP3A-210ENST00000580713 CCDC144AA2RUR9 1427 aa16.2■□□□□ 0.18
TOP3A-210ENST00000580713 USP32Q8NFA0 1604 aa16.2■□□□□ 0.18
TOP3A-210ENST00000580713 PSME1Q06323 249 aa16.2■□□□□ 0.18
TOP3A-210ENST00000580713 ZBTB22O15209 634 aa16.19■□□□□ 0.18
TOP3A-210ENST00000580713 FAM98CQ17RN3 349 aaKnown RBP16.19■□□□□ 0.18
TOP3A-210ENST00000580713 FAM83GA6ND36 823 aa16.16■□□□□ 0.18
TOP3A-210ENST00000580713 PHF8Q9UPP1 1060 aa16.16■□□□□ 0.18
TOP3A-210ENST00000580713 TNS3Q68CZ2 1445 aa16.16■□□□□ 0.18
TOP3A-210ENST00000580713 ADGRF5Q8IZF2 1346 aa16.16■□□□□ 0.18
TOP3A-210ENST00000580713 PLEKHH1Q9ULM0 1364 aa16.15■□□□□ 0.18
TOP3A-210ENST00000580713 YY1P25490 414 aa16.15■□□□□ 0.18
TOP3A-210ENST00000580713 FAM182BQ5T319 152 aa16.15■□□□□ 0.18
TOP3A-210ENST00000580713 TMEM132EQ6IEE7 984 aa16.15■□□□□ 0.18
TOP3A-210ENST00000580713 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
TOP3A-210ENST00000580713 RGL3Q3MIN7 710 aa16.14■□□□□ 0.17
TOP3A-210ENST00000580713 KIF1AQ12756 1690 aa16.14■□□□□ 0.17
TOP3A-210ENST00000580713 BTG4Q9NY30 223 aa16.13■□□□□ 0.17
TOP3A-210ENST00000580713 PLCH1Q4KWH8 1693 aa16.13■□□□□ 0.17
TOP3A-210ENST00000580713 PPLO60437 1756 aa16.13■□□□□ 0.17
TOP3A-210ENST00000580713 ABCC11Q96J66 1382 aa16.13■□□□□ 0.17
TOP3A-210ENST00000580713 NWD2Q9ULI1 1742 aa16.12■□□□□ 0.17
TOP3A-210ENST00000580713 EZH2Q15910 746 aaKnown RBP16.12■□□□□ 0.17
TOP3A-210ENST00000580713 ARHGEF10O15013 1369 aa16.12■□□□□ 0.17
TOP3A-210ENST00000580713 TECPR2O15040 1411 aa16.11■□□□□ 0.17
TOP3A-210ENST00000580713 SBNO1A3KN83 1393 aa16.11■□□□□ 0.17
TOP3A-210ENST00000580713 FMN2Q9NZ56 1722 aa16.11■□□□□ 0.17
TOP3A-210ENST00000580713 RRBP1Q9P2E9 1410 aaKnown RBP16.1■□□□□ 0.17
TOP3A-210ENST00000580713 PMFBP1Q8TBY8 1022 aa16.08■□□□□ 0.16
TOP3A-210ENST00000580713 TRIM37O94972 964 aa16.07■□□□□ 0.16
TOP3A-210ENST00000580713 SAFB2Q14151 953 aaKnown RBP eCLIP16.07■□□□□ 0.16
TOP3A-210ENST00000580713 RGPD1P0DJD0 1748 aa16.07■□□□□ 0.16
TOP3A-210ENST00000580713 YTHDC2Q9H6S0 1430 aaKnown RBP16.06■□□□□ 0.16
TOP3A-210ENST00000580713 NRXN1Q9ULB1 1477 aa16.05■□□□□ 0.16
TOP3A-210ENST00000580713 ANKRD30BQ9BXX2 1392 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms