RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 PKNOX2Q96KN3 472 aa13□□□□□ -0.33
USB1-212ENST00000566082 TBC1D32Q96NH3 1257 aa13□□□□□ -0.33
USB1-212ENST00000566082 TARBP1Q13395 1621 aaKnown RBP13□□□□□ -0.33
USB1-212ENST00000566082 RNF214Q8ND24 703 aa13□□□□□ -0.33
USB1-212ENST00000566082 GPATCH8Q9UKJ3 1502 aaKnown RBP13□□□□□ -0.33
USB1-212ENST00000566082 XRCC6P12956 609 aaKnown RBP eCLIP12.99□□□□□ -0.33
USB1-212ENST00000566082 RBM10P98175 930 aaKnown RBP12.99□□□□□ -0.33
USB1-212ENST00000566082 AMER1Q5JTC6 1135 aaPredicted RBP12.99□□□□□ -0.33
USB1-212ENST00000566082 GOLGA6L4A6NEF3 574 aa12.99□□□□□ -0.33
USB1-212ENST00000566082 TNNQ9UQP3 1299 aa12.99□□□□□ -0.33
USB1-212ENST00000566082 CTTNBP2Q8WZ74 1663 aa12.99□□□□□ -0.33
USB1-212ENST00000566082 KDM2BQ8NHM5 1336 aa12.99□□□□□ -0.33
USB1-212ENST00000566082 UBE2Q2Q8WVN8 375 aa12.99□□□□□ -0.33
USB1-212ENST00000566082 KDM6BO15054 1643 aa12.99□□□□□ -0.33
USB1-212ENST00000566082 DRC7Q8IY82 874 aa12.98□□□□□ -0.33
USB1-212ENST00000566082 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.98□□□□□ -0.33
USB1-212ENST00000566082 HMMRO75330 724 aa12.97□□□□□ -0.33
USB1-212ENST00000566082 NUCB2P80303 420 aa12.97□□□□□ -0.33
USB1-212ENST00000566082 RTF1Q92541 710 aaKnown RBP12.97□□□□□ -0.33
USB1-212ENST00000566082 RILPL2Q969X0 211 aa12.97□□□□□ -0.33
USB1-212ENST00000566082 TMEM57Q8N5G2 664 aa12.97□□□□□ -0.33
USB1-212ENST00000566082 SYNJ2O15056 1496 aa12.97□□□□□ -0.33
USB1-212ENST00000566082 MAGI3Q5TCQ9 1506 aa12.97□□□□□ -0.33
USB1-212ENST00000566082 CDC45O75419 566 aa12.96□□□□□ -0.33
USB1-212ENST00000566082 KIAA1211Q6ZU35 1233 aa12.96□□□□□ -0.34
USB1-212ENST00000566082 PRPF40AO75400 957 aaKnown RBP12.95□□□□□ -0.34
USB1-212ENST00000566082 CHD1LQ86WJ1 897 aa12.95□□□□□ -0.34
USB1-212ENST00000566082 SSH1Q8WYL5 1049 aa12.95□□□□□ -0.34
USB1-212ENST00000566082 VGFO15240 615 aaPredicted RBP12.95□□□□□ -0.34
USB1-212ENST00000566082 PRAG1Q86YV5 1406 aa12.95□□□□□ -0.34
USB1-212ENST00000566082 MAGI1Q96QZ7 1491 aaPredicted RBP12.95□□□□□ -0.34
USB1-212ENST00000566082 K7ELQ4 463 aaPredicted RBP12.95□□□□□ -0.34
USB1-212ENST00000566082 REC8O95072 547 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 MLECQ14165 292 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 RRAGDQ9NQL2 400 aaPredicted RBP12.94□□□□□ -0.34
USB1-212ENST00000566082 TAOK2Q9UL54 1235 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 NUP153P49790 1475 aaKnown RBP12.94□□□□□ -0.34
USB1-212ENST00000566082 CCDC141Q6ZP82 1450 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 RLBP1P12271 317 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 LMOD3Q0VAK6 560 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 CCDC173Q0VFZ6 552 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 NSD3Q9BZ95 1437 aa12.94□□□□□ -0.34
USB1-212ENST00000566082 INTS3Q68E01 1043 aaKnown RBP12.94□□□□□ -0.34
USB1-212ENST00000566082 TNPO1Q92973 898 aaKnown RBP12.94□□□□□ -0.34
USB1-212ENST00000566082 API5Q9BZZ5 524 aaKnown RBP12.94□□□□□ -0.34
USB1-212ENST00000566082 ISY1Q9ULR0 285 aaKnown RBP12.94□□□□□ -0.34
USB1-212ENST00000566082 RRP9O43818 475 aaKnown RBP12.93□□□□□ -0.34
USB1-212ENST00000566082 PRKAR2BP31323 418 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 FGD1P98174 961 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 ZRSR1Q15695 479 aaKnown RBP12.93□□□□□ -0.34
USB1-212ENST00000566082 MPNDQ8N594 471 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 NUTM2FA1L443 756 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 TPM2P07951 284 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 STK31Q9BXU1 1019 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 SCAPERQ9BY12 1400 aa12.93□□□□□ -0.34
USB1-212ENST00000566082 DMRT2Q9Y5R5 561 aa12.92□□□□□ -0.34
USB1-212ENST00000566082 TRIM27P14373 513 aa12.92□□□□□ -0.34
USB1-212ENST00000566082 ANO2Q9NQ90 1003 aa12.92□□□□□ -0.34
USB1-212ENST00000566082 PHF14O94880 888 aa12.91□□□□□ -0.34
USB1-212ENST00000566082 CIZ1Q9ULV3 898 aaPredicted RBP12.91□□□□□ -0.34
USB1-212ENST00000566082 NAP1L2Q9ULW6 460 aaPredicted RBP12.91□□□□□ -0.34
USB1-212ENST00000566082 TMPOP42166 694 aaKnown RBP12.9□□□□□ -0.34
USB1-212ENST00000566082 GNAI1P63096 354 aa12.9□□□□□ -0.34
USB1-212ENST00000566082 SSFA2P28290 1259 aa12.9□□□□□ -0.34
USB1-212ENST00000566082 GCC1Q96CN9 775 aa12.9□□□□□ -0.34
USB1-212ENST00000566082 UHRF1BP1Q6BDS2 1440 aa12.89□□□□□ -0.35
USB1-212ENST00000566082 CLCN1P35523 988 aa12.89□□□□□ -0.35
USB1-212ENST00000566082 NEK4P51957 841 aa12.89□□□□□ -0.35
USB1-212ENST00000566082 RABEP1Q15276 862 aa12.89□□□□□ -0.35
USB1-212ENST00000566082 PBRM1Q86U86 1689 aa12.89□□□□□ -0.35
USB1-212ENST00000566082 ADGRF5Q8IZF2 1346 aa12.89□□□□□ -0.35
USB1-212ENST00000566082 THUMPD2Q9BTF0 503 aaKnown RBP12.89□□□□□ -0.35
USB1-212ENST00000566082 ZNF608Q9ULD9 1512 aaPredicted RBP12.89□□□□□ -0.35
USB1-212ENST00000566082 CT47B1P0C2W7 299 aaPredicted RBP12.88□□□□□ -0.35
USB1-212ENST00000566082 CSPP1Q1MSJ5 1256 aa12.88□□□□□ -0.35
USB1-212ENST00000566082 ZSCAN30Q86W11 494 aa12.88□□□□□ -0.35
USB1-212ENST00000566082 NECTIN2Q92692 538 aa12.88□□□□□ -0.35
USB1-212ENST00000566082 CHMP3Q9Y3E7 222 aa12.88□□□□□ -0.35
USB1-212ENST00000566082 GCC2Q8IWJ2 1684 aa12.88□□□□□ -0.35
USB1-212ENST00000566082 DNMT1P26358 1616 aaKnown RBP12.87□□□□□ -0.35
USB1-212ENST00000566082 GPRASP1Q5JY77 1395 aa12.87□□□□□ -0.35
USB1-212ENST00000566082 TWISTNBQ3B726 338 aaPredicted RBP12.87□□□□□ -0.35
USB1-212ENST00000566082 KIF14Q15058 1648 aa12.87□□□□□ -0.35
USB1-212ENST00000566082 ARHGEF12Q9NZN5 1544 aa12.86□□□□□ -0.35
USB1-212ENST00000566082 COG3Q96JB2 828 aa12.86□□□□□ -0.35
USB1-212ENST00000566082 SCAF11Q99590 1463 aaKnown RBP12.86□□□□□ -0.35
USB1-212ENST00000566082 DENND4BO75064 1496 aaPredicted RBP12.86□□□□□ -0.35
USB1-212ENST00000566082 GRIN2AQ12879 1464 aa12.86□□□□□ -0.35
USB1-212ENST00000566082 ZMYM4Q5VZL5 1548 aa12.86□□□□□ -0.35
USB1-212ENST00000566082 COL17A1Q9UMD9 1497 aaPredicted RBP12.85□□□□□ -0.35
USB1-212ENST00000566082 KDM5BQ9UGL1 1544 aa12.85□□□□□ -0.35
USB1-212ENST00000566082 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.85□□□□□ -0.35
USB1-212ENST00000566082 ADAMTS12P58397 1594 aa12.85□□□□□ -0.35
USB1-212ENST00000566082 BLMP54132 1417 aaPredicted RBP12.85□□□□□ -0.35
USB1-212ENST00000566082 CARD14Q9BXL6 1004 aa12.85□□□□□ -0.35
USB1-212ENST00000566082 CCDC39Q9UFE4 941 aa12.85□□□□□ -0.35
USB1-212ENST00000566082 SAMD9Q5K651 1589 aa12.84□□□□□ -0.35
USB1-212ENST00000566082 RBM42Q9BTD8 480 aaKnown RBP12.84□□□□□ -0.35
USB1-212ENST00000566082 ZMYND15Q9H091 742 aa12.84□□□□□ -0.35
USB1-212ENST00000566082 ASXL1Q8IXJ9 1541 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms