RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 LCE3BQ5TA77 95 aa3.46□□□□□ -1.85
USB1-212ENST00000566082 MT1EP04732 61 aa3.46□□□□□ -1.86
USB1-212ENST00000566082 KRTAP19-7Q3SYF9 63 aa3.45□□□□□ -1.86
USB1-212ENST00000566082 OBSCNQ5VST9 7968 aa3.44□□□□□ -1.86
USB1-212ENST00000566082 SSPOA2VEC9 5147 aa3.44□□□□□ -1.86
USB1-212ENST00000566082 LOC100996750A0A140TA64 210 aa3.42□□□□□ -1.86
USB1-212ENST00000566082 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.86
USB1-212ENST00000566082 KRTAP2-3P0C7H8 128 aa3.4□□□□□ -1.87
USB1-212ENST00000566082 KRTAP2-4Q9BYR9 128 aa3.4□□□□□ -1.87
USB1-212ENST00000566082 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
USB1-212ENST00000566082 DSTQ03001 7570 aaKnown RBP3.37□□□□□ -1.87
USB1-212ENST00000566082 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
USB1-212ENST00000566082 KRTAP19-3Q7Z4W3 81 aa3.32□□□□□ -1.88
USB1-212ENST00000566082 KRTAP19-6Q3LI70 58 aa3.3□□□□□ -1.88
USB1-212ENST00000566082 SYNE2Q8WXH0 6885 aaKnown RBP3.3□□□□□ -1.88
USB1-212ENST00000566082 MUC12Q9UKN1 5478 aa3.29□□□□□ -1.88
USB1-212ENST00000566082 MT1MQ8N339 61 aa3.28□□□□□ -1.88
USB1-212ENST00000566082 LCE3DQ9BYE3 92 aa3.26□□□□□ -1.89
USB1-212ENST00000566082 MACF1Q9UPN3 7388 aaKnown RBP3.23□□□□□ -1.89
USB1-212ENST00000566082 LCE3EQ5T5B0 92 aa3.21□□□□□ -1.89
USB1-212ENST00000566082 KRTAP4-9Q9BYQ8 210 aa3.21□□□□□ -1.9
USB1-212ENST00000566082 KRTAP9-2Q9BYQ4 174 aa3.16□□□□□ -1.9
USB1-212ENST00000566082 MDN1Q9NU22 5596 aa3.14□□□□□ -1.91
USB1-212ENST00000566082 PRM1P04553 51 aa3.13□□□□□ -1.91
USB1-212ENST00000566082 SPRR2EP22531 72 aa3.11□□□□□ -1.91
USB1-212ENST00000566082 SPRR2BP35325 72 aa3.11□□□□□ -1.91
USB1-212ENST00000566082 SPRR2AP35326 72 aa3.11□□□□□ -1.91
USB1-212ENST00000566082 LCE5AQ5TCM9 118 aa3.07□□□□□ -1.92
USB1-212ENST00000566082 KRTAP6-1Q3LI64 71 aa2.99□□□□□ -1.93
USB1-212ENST00000566082 MT1AP04731 61 aa2.98□□□□□ -1.93
USB1-212ENST00000566082 KRTAP9-4Q9BYQ2 154 aa2.97□□□□□ -1.93
USB1-212ENST00000566082 SPRR2DP22532 72 aa2.97□□□□□ -1.93
USB1-212ENST00000566082 KRTAP9-7A8MTY7 169 aa2.96□□□□□ -1.94
USB1-212ENST00000566082 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
USB1-212ENST00000566082 KRTAP9-6A0A140TA67 174 aa2.93□□□□□ -1.94
USB1-212ENST00000566082 KRTAP4-6Q9BYQ5 205 aa2.9□□□□□ -1.95
USB1-212ENST00000566082 MT3P25713 68 aa2.89□□□□□ -1.95
USB1-212ENST00000566082 KRTAP2-2Q9BYT5 123 aa2.87□□□□□ -1.95
USB1-212ENST00000566082 KRTAP5-9P26371 169 aa2.87□□□□□ -1.95
USB1-212ENST00000566082 LCE4AQ5TA78 99 aa2.87□□□□□ -1.95
USB1-212ENST00000566082 KRTAP6-2Q3LI66 62 aa2.86□□□□□ -1.95
USB1-212ENST00000566082 KRTAP6-3Q3LI67 103 aa2.85□□□□□ -1.95
USB1-212ENST00000566082 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.84□□□□□ -1.96
USB1-212ENST00000566082 LCE1EQ5T753 118 aa2.8□□□□□ -1.96
USB1-212ENST00000566082 LCE1AQ5T7P2 110 aa2.79□□□□□ -1.96
USB1-212ENST00000566082 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
USB1-212ENST00000566082 MT4P47944 62 aa2.72□□□□□ -1.97
USB1-212ENST00000566082 LCE1DQ5T752 114 aa2.65□□□□□ -1.99
USB1-212ENST00000566082 KRTAP5-5Q701N2 237 aaPredicted RBP2.65□□□□□ -1.99
USB1-212ENST00000566082 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
USB1-212ENST00000566082 NEBP20929 6669 aa2.48□□□□□ -2.01
USB1-212ENST00000566082 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
USB1-212ENST00000566082 KRTAP5-3Q6L8H2 238 aa2.44□□□□□ -2.02
USB1-212ENST00000566082 KRTAP20-1Q3LI63 56 aa2.43□□□□□ -2.02
USB1-212ENST00000566082 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
USB1-212ENST00000566082 KRTAP4-11Q9BYQ6 195 aa2.37□□□□□ -2.03
USB1-212ENST00000566082 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.04
USB1-212ENST00000566082 KRTAP4-2Q9BYR5 136 aa2.27□□□□□ -2.05
USB1-212ENST00000566082 KRTAP20-2Q3LI61 65 aa2.26□□□□□ -2.05
USB1-212ENST00000566082 KRTAP5-2Q701N4 177 aa2.18□□□□□ -2.06
USB1-212ENST00000566082 KRTAP4-12Q9BQ66 201 aa2.17□□□□□ -2.06
USB1-212ENST00000566082 MUC5ACP98088 5654 aa2.15□□□□□ -2.06
USB1-212ENST00000566082 GPR98Q8WXG9 6306 aa2.07□□□□□ -2.08
USB1-212ENST00000566082 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
USB1-212ENST00000566082 KRTAP5-10Q6L8G5 202 aa2□□□□□ -2.09
USB1-212ENST00000566082 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
USB1-212ENST00000566082 LCE1CQ5T751 118 aa1.96□□□□□ -2.1
USB1-212ENST00000566082 AHNAK2Q8IVF2 5795 aa1.93□□□□□ -2.1
USB1-212ENST00000566082 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
USB1-212ENST00000566082 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
USB1-212ENST00000566082 KRTAP5-7Q6L8G8 165 aa1.83□□□□□ -2.12
USB1-212ENST00000566082 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.73□□□□□ -2.13
USB1-212ENST00000566082 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
USB1-212ENST00000566082 KRTAP5-11Q6L8G4 156 aa1.63□□□□□ -2.15
USB1-212ENST00000566082 KRTAP21-1Q3LI58 79 aa1.62□□□□□ -2.15
USB1-212ENST00000566082 AHNAKQ09666 5890 aaKnown RBP1.42□□□□□ -2.18
USB1-212ENST00000566082 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
USB1-212ENST00000566082 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 13.8 ms