RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.57□□□□□ -0.561e-12■■■■■ 111.8
USB1-212ENST00000566082 PTBP1P26599 531 aaKnown RBP eCLIP9.8□□□□□ -0.849e-16■■■■■ 106.3
USB1-212ENST00000566082 SF3B4Q15427 424 aaKnown RBP eCLIP10.22□□□□□ -0.774e-17■■■■■ 82.4
USB1-212ENST00000566082 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.36□□□□□ -0.593e-11■■■■■ 52.2
USB1-212ENST00000566082 PCBP2Q15366 365 aaKnown RBP eCLIP10.18□□□□□ -0.783e-13■■■■■ 34
USB1-212ENST00000566082 TIA1P31483 386 aaKnown RBP eCLIP10.1□□□□□ -0.791e-11■■■■■ 33
USB1-212ENST00000566082 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.55□□□□□ -0.728e-7■■■■□ 23.2
USB1-212ENST00000566082 UPF1Q92900 1129 aaKnown RBP eCLIP10.19□□□□□ -0.785e-19■■■■□ 21.5
USB1-212ENST00000566082 MATR3P43243 847 aaKnown RBP eCLIP12.05□□□□□ -0.482e-10■■■□□ 19.1
USB1-212ENST00000566082 ILF3Q12906 894 aaKnown RBP eCLIP9.81□□□□□ -0.848e-15■■■□□ 19
USB1-212ENST00000566082 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.55□□□□□ -0.43e-8■■□□□ 14.4
USB1-212ENST00000566082 GTF2F1P35269 517 aaKnown RBP eCLIP12.32□□□□□ -0.445e-10■■□□□ 14.3
USB1-212ENST00000566082 PPIGQ13427 754 aaKnown RBP eCLIP10.2□□□□□ -0.789e-7■■□□□ 11.6
USB1-212ENST00000566082 PABPC4Q13310 644 aaKnown RBP eCLIP11.51□□□□□ -0.572e-6■■□□□ 11.4
USB1-212ENST00000566082 YBX3P16989 372 aaKnown RBP eCLIP10.68□□□□□ -0.76e-6■□□□□ 10.9
USB1-212ENST00000566082 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.52□□□□□ -1.055e-7■□□□□ 8.1
Retrieved 16 of 16 RNA–protein pairs in 4.6 ms