RNA–Protein interactions for RNA: ENST00000552422.5

CNOT2-238, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 3

Gene CNOT2, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-238	ENST00000552422	NBPF26	B4DH59	902 aa		10.66	□□□□□ -0.7
CNOT2-238	ENST00000552422	BCAM	P50895	628 aa		10.66	□□□□□ -0.7
CNOT2-238	ENST00000552422	RBM27	Q9P2N5	1060 aa	Known RBP	10.66	□□□□□ -0.7
CNOT2-238	ENST00000552422	FAM198A	Q9UFP1	575 aa		10.66	□□□□□ -0.7
CNOT2-238	ENST00000552422	TTC37	Q6PGP7	1564 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	MYO5C	Q9NQX4	1742 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	NUTM2F	A1L443	756 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	SMAP	O00193	183 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	PLA2G2E	Q9NZK7	142 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	PNMA3	Q9UL41	463 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	KIF14	Q15058	1648 aa		10.65	□□□□□ -0.7
CNOT2-238	ENST00000552422	SOWAHB	A6NEL2	793 aa		10.64	□□□□□ -0.71
CNOT2-238	ENST00000552422	PADI6	Q6TGC4	694 aa		10.64	□□□□□ -0.71
CNOT2-238	ENST00000552422	TATDN2	Q93075	761 aa		10.64	□□□□□ -0.71
CNOT2-238	ENST00000552422	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	10.63	□□□□□ -0.71	3e-8	■■■□□ 17.7
CNOT2-238	ENST00000552422	TEX14	Q8IWB6	1497 aa		10.63	□□□□□ -0.71
CNOT2-238	ENST00000552422	KDM6B	O15054	1643 aa		10.63	□□□□□ -0.71
CNOT2-238	ENST00000552422	MAGI3	Q5TCQ9	1506 aa		10.63	□□□□□ -0.71
CNOT2-238	ENST00000552422	TESPA1	A2RU30	521 aa	Predicted RBP	10.62	□□□□□ -0.71
CNOT2-238	ENST00000552422	NUDT18	Q6ZVK8	323 aa		10.62	□□□□□ -0.71
CNOT2-238	ENST00000552422	LRCH3	Q96II8	777 aa		10.62	□□□□□ -0.71
CNOT2-238	ENST00000552422	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.62	□□□□□ -0.71
CNOT2-238	ENST00000552422	CD109	Q6YHK3	1445 aa		10.61	□□□□□ -0.71
CNOT2-238	ENST00000552422	VPS8	Q8N3P4	1428 aa		10.61	□□□□□ -0.71
CNOT2-238	ENST00000552422	SMYD5	Q6GMV2	418 aa		10.61	□□□□□ -0.71
CNOT2-238	ENST00000552422	CDC42BPA	Q5VT25	1732 aa		10.61	□□□□□ -0.71
CNOT2-238	ENST00000552422	CFAP74	Q9C0B2	1584 aa		10.6	□□□□□ -0.71
CNOT2-238	ENST00000552422	TRO	Q12816	1431 aa	Predicted RBP	10.6	□□□□□ -0.71
CNOT2-238	ENST00000552422	C3orf80	F5H4A9	247 aa		10.6	□□□□□ -0.71
CNOT2-238	ENST00000552422	PTGDR	Q13258	359 aa		10.6	□□□□□ -0.71
CNOT2-238	ENST00000552422	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.6	□□□□□ -0.71
CNOT2-238	ENST00000552422	CDC42BPB	Q9Y5S2	1711 aa		10.6	□□□□□ -0.71
CNOT2-238	ENST00000552422	PREX2	Q70Z35	1606 aa		10.59	□□□□□ -0.71
CNOT2-238	ENST00000552422	PLEKHD1	A6NEE1	506 aa		10.59	□□□□□ -0.71
CNOT2-238	ENST00000552422	TTC13	Q8NBP0	860 aa		10.59	□□□□□ -0.71
CNOT2-238	ENST00000552422	TIAM1	Q13009	1591 aa		10.59	□□□□□ -0.71
CNOT2-238	ENST00000552422	ARAP3	Q8WWN8	1544 aa		10.58	□□□□□ -0.72
CNOT2-238	ENST00000552422	SAMD7	Q7Z3H4	446 aa		10.57	□□□□□ -0.72
CNOT2-238	ENST00000552422	WBP1L	Q9NX94	342 aa		10.57	□□□□□ -0.72
CNOT2-238	ENST00000552422	HPS5	Q9UPZ3	1129 aa		10.57	□□□□□ -0.72
CNOT2-238	ENST00000552422	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.57	□□□□□ -0.72
CNOT2-238	ENST00000552422	EHBP1L1	Q8N3D4	1523 aa		10.57	□□□□□ -0.72
CNOT2-238	ENST00000552422	RBM26	Q5T8P6	1007 aa	Known RBP	10.56	□□□□□ -0.72
CNOT2-238	ENST00000552422	TSR3	Q9UJK0	312 aa	Known RBP	10.56	□□□□□ -0.72
CNOT2-238	ENST00000552422	RICTOR	Q6R327	1708 aa		10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	SUPT6H	Q7KZ85	1726 aa	Known RBP	10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	NEO1	Q92859	1461 aa		10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	MAP3K1	Q13233	1512 aa		10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	ITSN2	Q9NZM3	1697 aa		10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	FCHSD2	O94868	740 aa		10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	HDGF	P51858	240 aa	Known RBP	10.55	□□□□□ -0.72
CNOT2-238	ENST00000552422	NYAP1	Q6ZVC0	841 aa		10.54	□□□□□ -0.72
CNOT2-238	ENST00000552422	FANCA	O15360	1455 aa		10.54	□□□□□ -0.72
CNOT2-238	ENST00000552422	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.54	□□□□□ -0.72
CNOT2-238	ENST00000552422	FRMPD1	Q5SYB0	1578 aa		10.53	□□□□□ -0.72
CNOT2-238	ENST00000552422	PPP4C	P60510	307 aa		10.53	□□□□□ -0.72
CNOT2-238	ENST00000552422	PLCH2	O75038	1416 aa		10.52	□□□□□ -0.73
CNOT2-238	ENST00000552422	RNF40	O75150	1001 aa		10.52	□□□□□ -0.73
CNOT2-238	ENST00000552422	MTUS2	Q5JR59	1369 aa		10.52	□□□□□ -0.73
CNOT2-238	ENST00000552422	PHLDB1	Q86UU1	1377 aa		10.52	□□□□□ -0.73
CNOT2-238	ENST00000552422	ARHGAP5	Q13017	1502 aa		10.51	□□□□□ -0.73
CNOT2-238	ENST00000552422	LRRC9	Q6ZRR7	1453 aa		10.5	□□□□□ -0.73
CNOT2-238	ENST00000552422	RBM46	Q8TBY0	533 aa	Known RBP	10.5	□□□□□ -0.73
CNOT2-238	ENST00000552422	EYA1	Q99502	592 aa		10.5	□□□□□ -0.73
CNOT2-238	ENST00000552422	HIC1	Q14526	733 aa		10.49	□□□□□ -0.73
CNOT2-238	ENST00000552422	ABCC1	P33527	1531 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	ZMYM4	Q5VZL5	1548 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	SAMD9L	Q8IVG5	1584 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	TULP1	O00294	542 aa	Predicted RBP	10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	FAM161A	Q3B820	660 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	SWT1	Q5T5J6	900 aa	Known RBP	10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	ADGRG1	Q9Y653	693 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	AKNA	Q7Z591	1439 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	ADGRL1	O94910	1474 aa		10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	GPATCH8	Q9UKJ3	1502 aa	Known RBP	10.48	□□□□□ -0.73
CNOT2-238	ENST00000552422	SLC4A3	P48751	1232 aa		10.47	□□□□□ -0.73
CNOT2-238	ENST00000552422	NCOA2	Q15596	1464 aa		10.47	□□□□□ -0.73
CNOT2-238	ENST00000552422	GPIHBP1	Q8IV16	184 aa		10.46	□□□□□ -0.73
CNOT2-238	ENST00000552422	SLF2	Q8IX21	1173 aa		10.46	□□□□□ -0.73
CNOT2-238	ENST00000552422	KDM5C	P41229	1560 aa		10.46	□□□□□ -0.74
CNOT2-238	ENST00000552422	ARHGEF40	Q8TER5	1519 aa		10.45	□□□□□ -0.74
CNOT2-238	ENST00000552422	DENND4B	O75064	1496 aa	Predicted RBP	10.45	□□□□□ -0.74
CNOT2-238	ENST00000552422	POGZ	Q7Z3K3	1410 aa		10.45	□□□□□ -0.74
CNOT2-238	ENST00000552422	GNPAT	O15228	680 aa		10.45	□□□□□ -0.74
CNOT2-238	ENST00000552422	DNAJB2	P25686	324 aa		10.45	□□□□□ -0.74
CNOT2-238	ENST00000552422	ITGBL1	O95965	494 aa	Predicted RBP	10.44	□□□□□ -0.74
CNOT2-238	ENST00000552422	IFFO2	Q5TF58	517 aa		10.44	□□□□□ -0.74
CNOT2-238	ENST00000552422	HECW2	Q9P2P5	1572 aa		10.43	□□□□□ -0.74
CNOT2-238	ENST00000552422	SYCP2	Q9BX26	1530 aa		10.43	□□□□□ -0.74
CNOT2-238	ENST00000552422	ZNF518A	Q6AHZ1	1483 aa		10.43	□□□□□ -0.74
CNOT2-238	ENST00000552422	CCNB3	Q8WWL7	1395 aa		10.43	□□□□□ -0.74
CNOT2-238	ENST00000552422	EFCAB2	Q5VUJ9	269 aa		10.43	□□□□□ -0.74
CNOT2-238	ENST00000552422	NECTIN2	Q92692	538 aa		10.43	□□□□□ -0.74
CNOT2-238	ENST00000552422	SCAPER	Q9BY12	1400 aa		10.42	□□□□□ -0.74
CNOT2-238	ENST00000552422	RCCD1	A6NED2	376 aa		10.42	□□□□□ -0.74
CNOT2-238	ENST00000552422	GPR37	O15354	613 aa		10.42	□□□□□ -0.74
CNOT2-238	ENST00000552422	ARHGEF12	Q9NZN5	1544 aa		10.42	□□□□□ -0.74
CNOT2-238	ENST00000552422	KIDINS220	Q9ULH0	1771 aa		10.42	□□□□□ -0.74
CNOT2-238	ENST00000552422	RAPGEF3	O95398	923 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms