RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CDC42BPGQ6DT37 1551 aa7.16□□□□□ -1.26
USP28-213ENST00000544967 FBXO31Q5XUX0 539 aaPredicted RBP7.15□□□□□ -1.26
USP28-213ENST00000544967 FMN2Q9NZ56 1722 aa7.15□□□□□ -1.26
USP28-213ENST00000544967 WASHC2AQ641Q2 1341 aa7.15□□□□□ -1.26
USP28-213ENST00000544967 GPRASP1Q5JY77 1395 aa7.14□□□□□ -1.27
USP28-213ENST00000544967 IDI1Q13907 227 aa7.14□□□□□ -1.27
USP28-213ENST00000544967 RALGAPBQ86X10 1494 aa7.13□□□□□ -1.27
USP28-213ENST00000544967 ANP32CO43423 234 aa7.13□□□□□ -1.27
USP28-213ENST00000544967 DCCP43146 1447 aa7.13□□□□□ -1.27
USP28-213ENST00000544967 CEBPAP49715 358 aaPredicted RBP7.13□□□□□ -1.27
USP28-213ENST00000544967 NHSL1Q5SYE7 1610 aa7.13□□□□□ -1.27
USP28-213ENST00000544967 THEMISQ8N1K5 641 aaPredicted RBP7.12□□□□□ -1.27
USP28-213ENST00000544967 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.12□□□□□ -1.27
USP28-213ENST00000544967 FAM135BQ49AJ0 1406 aa7.12□□□□□ -1.27
USP28-213ENST00000544967 LRRC7Q96NW7 1537 aa7.12□□□□□ -1.27
USP28-213ENST00000544967 ITSN1Q15811 1721 aa7.12□□□□□ -1.27
USP28-213ENST00000544967 CFAP44Q96MT7 982 aa7.12□□□□□ -1.27
USP28-213ENST00000544967 ANO8Q9HCE9 1232 aaPredicted RBP7.11□□□□□ -1.27
USP28-213ENST00000544967 USP32Q8NFA0 1604 aa7.11□□□□□ -1.27
USP28-213ENST00000544967 PTPRUQ92729 1446 aa7.11□□□□□ -1.27
USP28-213ENST00000544967 QRICH2Q9H0J4 1663 aa7.11□□□□□ -1.27
USP28-213ENST00000544967 KIF1AQ12756 1690 aa7.11□□□□□ -1.27
USP28-213ENST00000544967 MLECQ14165 292 aa7.11□□□□□ -1.27
USP28-213ENST00000544967 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP28-213ENST00000544967 ESF1Q9H501 851 aaKnown RBP7.11□□□□□ -1.27
USP28-213ENST00000544967 CRYBG1Q9Y4K1 1723 aa7.11□□□□□ -1.27
USP28-213ENST00000544967 SIRT1Q96EB6 747 aa7.1□□□□□ -1.27
USP28-213ENST00000544967 RTL5Q5HYW3 569 aaPredicted RBP7.09□□□□□ -1.27
USP28-213ENST00000544967 AHDC1Q5TGY3 1603 aaPredicted RBP7.09□□□□□ -1.27
USP28-213ENST00000544967 DMRT2Q9Y5R5 561 aa7.09□□□□□ -1.27
USP28-213ENST00000544967 COL22A1Q8NFW1 1626 aaPredicted RBP7.09□□□□□ -1.27
USP28-213ENST00000544967 IPO9Q96P70 1041 aaKnown RBP7.08□□□□□ -1.28
USP28-213ENST00000544967 NRKQ7Z2Y5 1582 aa7.08□□□□□ -1.28
USP28-213ENST00000544967 AKAP12Q02952 1782 aa7.08□□□□□ -1.28
USP28-213ENST00000544967 LTKP29376 864 aa7.08□□□□□ -1.28
USP28-213ENST00000544967 TBX22Q9Y458 520 aa7.08□□□□□ -1.28
USP28-213ENST00000544967 TRPM3Q9HCF6 1732 aaPredicted RBP7.08□□□□□ -1.28
USP28-213ENST00000544967 MST1RQ04912 1400 aa7.07□□□□□ -1.28
USP28-213ENST00000544967 LRPPRCP42704 1394 aaKnown RBP7.07□□□□□ -1.28
USP28-213ENST00000544967 ABCC11Q96J66 1382 aa7.07□□□□□ -1.28
USP28-213ENST00000544967 ITGAEP38570 1179 aa7.07□□□□□ -1.28
USP28-213ENST00000544967 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP28-213ENST00000544967 SBNO2Q9Y2G9 1366 aa7.07□□□□□ -1.28
USP28-213ENST00000544967 MYOM1P52179 1685 aa7.07□□□□□ -1.28
USP28-213ENST00000544967 SHPRHQ149N8 1683 aa7.07□□□□□ -1.28
USP28-213ENST00000544967 RNF123Q5XPI4 1314 aa7.06□□□□□ -1.28
USP28-213ENST00000544967 FGD1P98174 961 aa7.06□□□□□ -1.28
USP28-213ENST00000544967 ANKLE2Q86XL3 938 aa7.06□□□□□ -1.28
USP28-213ENST00000544967 SALL2Q9Y467 1007 aaPredicted RBP7.06□□□□□ -1.28
USP28-213ENST00000544967 ABCA3Q99758 1704 aa7.06□□□□□ -1.28
USP28-213ENST00000544967 MARF1Q9Y4F3 1742 aaKnown RBP7.06□□□□□ -1.28
USP28-213ENST00000544967 ANP32AP39687 249 aaKnown RBP7.06□□□□□ -1.28
USP28-213ENST00000544967 MON2Q7Z3U7 1717 aa7.06□□□□□ -1.28
USP28-213ENST00000544967 ZBED9Q6R2W3 1325 aa7.05□□□□□ -1.28
USP28-213ENST00000544967 NPM3O75607 178 aaKnown RBP7.05□□□□□ -1.28
USP28-213ENST00000544967 ADGRL3Q9HAR2 1447 aa7.05□□□□□ -1.28
USP28-213ENST00000544967 HDGFP51858 240 aaKnown RBP7.05□□□□□ -1.28
USP28-213ENST00000544967 CCDC136Q96JN2 1154 aa7.05□□□□□ -1.28
USP28-213ENST00000544967 C14orf93Q9H972 538 aaKnown RBP7.05□□□□□ -1.28
USP28-213ENST00000544967 YTHDC2Q9H6S0 1430 aaKnown RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 HSP90B1P14625 803 aaKnown RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 METP08581 1390 aa7.04□□□□□ -1.28
USP28-213ENST00000544967 MED1Q15648 1581 aaPredicted RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 PPM1GO15355 546 aaPredicted RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 DDX10Q13206 875 aaKnown RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP28-213ENST00000544967 ALS2Q96Q42 1657 aa7.04□□□□□ -1.28
USP28-213ENST00000544967 COL16A1Q07092 1604 aaPredicted RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 SMG6Q86US8 1419 aaKnown RBP7.04□□□□□ -1.28
USP28-213ENST00000544967 RSPH6AQ9H0K4 717 aa7.04□□□□□ -1.28
USP28-213ENST00000544967 VGFO15240 615 aaPredicted RBP7.03□□□□□ -1.28
USP28-213ENST00000544967 TULP4Q9NRJ4 1543 aa7.03□□□□□ -1.28
USP28-213ENST00000544967 ROBO1Q9Y6N7 1651 aa7.03□□□□□ -1.28
USP28-213ENST00000544967 ANKARQ7Z5J8 1434 aa7.03□□□□□ -1.28
USP28-213ENST00000544967 RGPD8O14715 1765 aaPredicted RBP7.03□□□□□ -1.28
USP28-213ENST00000544967 TRIM52Q96A61 297 aa7.03□□□□□ -1.28
USP28-213ENST00000544967 NCKAP5LQ9HCH0 1330 aa7.03□□□□□ -1.28
USP28-213ENST00000544967 PHRF1Q9P1Y6 1649 aaKnown RBP7.02□□□□□ -1.28
USP28-213ENST00000544967 KCNA6P17658 529 aa7.02□□□□□ -1.29
USP28-213ENST00000544967 ZBTB47Q9UFB7 747 aaPredicted RBP7.02□□□□□ -1.29
USP28-213ENST00000544967 ADGRF5Q8IZF2 1346 aa7.02□□□□□ -1.29
USP28-213ENST00000544967 EID1Q9Y6B2 187 aa7.02□□□□□ -1.29
USP28-213ENST00000544967 ANKRD26Q9UPS8 1709 aa7.01□□□□□ -1.29
USP28-213ENST00000544967 FOXD1Q16676 465 aa7.01□□□□□ -1.29
USP28-213ENST00000544967 TXNDC2Q86VQ3 553 aa7□□□□□ -1.29
USP28-213ENST00000544967 HSPA2P54652 639 aa7□□□□□ -1.29
USP28-213ENST00000544967 ROBO2Q9HCK4 1378 aa7□□□□□ -1.29
USP28-213ENST00000544967 MS4A1P11836 297 aa6.99□□□□□ -1.29
USP28-213ENST00000544967 IRX6P78412 446 aaPredicted RBP6.99□□□□□ -1.29
USP28-213ENST00000544967 ATP7BP35670 1465 aa6.99□□□□□ -1.29
USP28-213ENST00000544967 PAK3O75914 559 aaPredicted RBP6.99□□□□□ -1.29
USP28-213ENST00000544967 GLIPR1L2Q4G1C9 344 aa6.99□□□□□ -1.29
USP28-213ENST00000544967 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.99□□□□□ -1.29
USP28-213ENST00000544967 CCDC9Q9Y3X0 531 aaKnown RBP6.99□□□□□ -1.29
USP28-213ENST00000544967 ABCC6O95255 1503 aa6.98□□□□□ -1.29
USP28-213ENST00000544967 FAM43AQ8N2R8 423 aa6.98□□□□□ -1.29
USP28-213ENST00000544967 PHLPP1O60346 1717 aa6.98□□□□□ -1.29
USP28-213ENST00000544967 HNRNPUQ00839 825 aaKnown RBP eCLIP6.98□□□□□ -1.29
USP28-213ENST00000544967 NECTIN2Q92692 538 aa6.97□□□□□ -1.29
USP28-213ENST00000544967 PXDNQ92626 1479 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms