RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CPS1P31327 1500 aa10.78□□□□□ -0.68
HDAC3-209ENST00000486618 INO80Q9ULG1 1556 aaPredicted RBP10.77□□□□□ -0.68
HDAC3-209ENST00000486618 ADGBQ8N7X0 1667 aa10.77□□□□□ -0.69
HDAC3-209ENST00000486618 ARSIQ5FYB1 569 aa10.77□□□□□ -0.69
HDAC3-209ENST00000486618 SLC34A2O95436 690 aa10.76□□□□□ -0.69
HDAC3-209ENST00000486618 FOXK1P85037 733 aa10.76□□□□□ -0.69
HDAC3-209ENST00000486618 DNMT1P26358 1616 aaKnown RBP10.76□□□□□ -0.69
HDAC3-209ENST00000486618 SHANK2Q9UPX8 1470 aa10.75□□□□□ -0.69
HDAC3-209ENST00000486618 MED1Q15648 1581 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-209ENST00000486618 TULP1O00294 542 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-209ENST00000486618 ANKLE2Q86XL3 938 aa10.75□□□□□ -0.69
HDAC3-209ENST00000486618 KHSRPQ92945 711 aaKnown RBP eCLIP10.75□□□□□ -0.69
HDAC3-209ENST00000486618 POLR1AO95602 1720 aaPredicted RBP10.75□□□□□ -0.69
HDAC3-209ENST00000486618 DSG2Q14126 1118 aa10.74□□□□□ -0.69
HDAC3-209ENST00000486618 THEMISQ8N1K5 641 aaPredicted RBP10.74□□□□□ -0.69
HDAC3-209ENST00000486618 ERBB3P21860 1342 aa10.74□□□□□ -0.69
HDAC3-209ENST00000486618 MTUS2Q5JR59 1369 aa10.74□□□□□ -0.69
HDAC3-209ENST00000486618 TNRQ92752 1358 aa10.74□□□□□ -0.69
HDAC3-209ENST00000486618 RTEL1-TNFRSF6BF6WH68 1400 aa10.74□□□□□ -0.69
HDAC3-209ENST00000486618 BBXQ8WY36 941 aaPredicted RBP10.73□□□□□ -0.69
HDAC3-209ENST00000486618 CRISPLD2Q9H0B8 497 aa10.73□□□□□ -0.69
HDAC3-209ENST00000486618 DHX29Q7Z478 1369 aaKnown RBP10.73□□□□□ -0.69
HDAC3-209ENST00000486618 KIF3BO15066 747 aa10.72□□□□□ -0.69
HDAC3-209ENST00000486618 FBXO31Q5XUX0 539 aaPredicted RBP10.72□□□□□ -0.69
HDAC3-209ENST00000486618 PLPP6Q8IY26 295 aa10.72□□□□□ -0.69
HDAC3-209ENST00000486618 VARS2Q5ST30 1063 aaKnown RBP10.71□□□□□ -0.69
HDAC3-209ENST00000486618 FAM135AQ9P2D6 1515 aa10.71□□□□□ -0.69
HDAC3-209ENST00000486618 WASHC2CQ9Y4E1 1318 aa10.71□□□□□ -0.69
HDAC3-209ENST00000486618 PCDHGA4Q9Y5G9 962 aa10.71□□□□□ -0.69
HDAC3-209ENST00000486618 NEURL4Q96JN8 1562 aa10.7□□□□□ -0.7
HDAC3-209ENST00000486618 PZPP20742 1482 aa10.7□□□□□ -0.7
HDAC3-209ENST00000486618 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.7□□□□□ -0.7
HDAC3-209ENST00000486618 ZNF644Q9H582 1327 aaPredicted RBP10.7□□□□□ -0.7
HDAC3-209ENST00000486618 RSPH4AQ5TD94 716 aa10.7□□□□□ -0.7
HDAC3-209ENST00000486618 NLRP1Q9C000 1473 aa10.69□□□□□ -0.7
HDAC3-209ENST00000486618 MBD5Q9P267 1494 aa10.69□□□□□ -0.7
HDAC3-209ENST00000486618 NPHP4O75161 1426 aaPredicted RBP10.69□□□□□ -0.7
HDAC3-209ENST00000486618 MIA2Q96PC5 1412 aa10.69□□□□□ -0.7
HDAC3-209ENST00000486618 NUDT7P0C024 238 aa10.69□□□□□ -0.7
HDAC3-209ENST00000486618 KRTAP3-3Q9BYR6 98 aa10.69□□□□□ -0.7
HDAC3-209ENST00000486618 KRTAP3-2Q9BYR7 98 aa10.69□□□□□ -0.7
HDAC3-209ENST00000486618 KDM5DQ9BY66 1539 aa10.68□□□□□ -0.7
HDAC3-209ENST00000486618 VWDEQ8N2E2 1590 aa10.68□□□□□ -0.7
HDAC3-209ENST00000486618 UGGT1Q9NYU2 1555 aa10.68□□□□□ -0.7
HDAC3-209ENST00000486618 MED14O60244 1454 aa10.68□□□□□ -0.7
HDAC3-209ENST00000486618 DEPDC5O75140 1603 aa10.67□□□□□ -0.7
HDAC3-209ENST00000486618 TIAM1Q13009 1591 aa10.66□□□□□ -0.7
HDAC3-209ENST00000486618 ZNF316A6NFI3 1004 aaPredicted RBP10.66□□□□□ -0.7
HDAC3-209ENST00000486618 PDE4AP27815 886 aa10.66□□□□□ -0.7
HDAC3-209ENST00000486618 PPP1R15BQ5SWA1 713 aa10.66□□□□□ -0.7
HDAC3-209ENST00000486618 PTCD2Q8WV60 388 aaKnown RBP10.66□□□□□ -0.7
HDAC3-209ENST00000486618 EHBP1L1Q8N3D4 1523 aa10.65□□□□□ -0.7
HDAC3-209ENST00000486618 TSPY4P0CV99 314 aa10.65□□□□□ -0.7
HDAC3-209ENST00000486618 TSPY10P0CW01 314 aa10.65□□□□□ -0.7
HDAC3-209ENST00000486618 CCDC141Q6ZP82 1450 aa10.65□□□□□ -0.7
HDAC3-209ENST00000486618 CEP162Q5TB80 1403 aa10.65□□□□□ -0.7
HDAC3-209ENST00000486618 IQGAP1P46940 1657 aa10.64□□□□□ -0.71
HDAC3-209ENST00000486618 CADPS2Q86UW7 1296 aa10.64□□□□□ -0.71
HDAC3-209ENST00000486618 ZNF687Q8N1G0 1237 aa10.63□□□□□ -0.71
HDAC3-209ENST00000486618 LRRC7Q96NW7 1537 aa10.63□□□□□ -0.71
HDAC3-209ENST00000486618 ALKQ9UM73 1620 aa10.62□□□□□ -0.71
HDAC3-209ENST00000486618 LARP6Q9BRS8 491 aaKnown RBP10.62□□□□□ -0.71
HDAC3-209ENST00000486618 LHX6Q9UPM6 363 aa10.62□□□□□ -0.71
HDAC3-209ENST00000486618 RNF17Q9BXT8 1623 aaKnown RBP10.62□□□□□ -0.71
HDAC3-209ENST00000486618 SYNMO15061 1565 aa10.61□□□□□ -0.71
HDAC3-209ENST00000486618 TPRNQ4KMQ1 711 aa10.61□□□□□ -0.71
HDAC3-209ENST00000486618 DDX27Q96GQ7 796 aaKnown RBP10.61□□□□□ -0.71
HDAC3-209ENST00000486618 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-209ENST00000486618 CAMSAP2Q08AD1 1489 aa10.61□□□□□ -0.71
HDAC3-209ENST00000486618 MFSD10Q14728 455 aa10.6□□□□□ -0.71
HDAC3-209ENST00000486618 SPNS2Q8IVW8 549 aa10.6□□□□□ -0.71
HDAC3-209ENST00000486618 SPRYD3Q8NCJ5 442 aa10.6□□□□□ -0.71
HDAC3-209ENST00000486618 CFAP65Q6ZU64 1925 aaKnown RBP10.6□□□□□ -0.71
HDAC3-209ENST00000486618 STRCP1A6NGW2 1772 aa10.6□□□□□ -0.71
HDAC3-209ENST00000486618 OXER1Q8TDS5 423 aa10.59□□□□□ -0.71
HDAC3-209ENST00000486618 ZC3H13Q5T200 1668 aaKnown RBP10.59□□□□□ -0.71
HDAC3-209ENST00000486618 ARHGEF5Q12774 1597 aa10.58□□□□□ -0.72
HDAC3-209ENST00000486618 NCOA2Q15596 1464 aa10.58□□□□□ -0.72
HDAC3-209ENST00000486618 TBC1D12O60347 775 aa10.58□□□□□ -0.72
HDAC3-209ENST00000486618 TXNDC2Q86VQ3 553 aa10.58□□□□□ -0.72
HDAC3-209ENST00000486618 UPF1Q92900 1129 aaKnown RBP eCLIP10.58□□□□□ -0.72
HDAC3-209ENST00000486618 EID1Q9Y6B2 187 aa10.58□□□□□ -0.72
HDAC3-209ENST00000486618 ERVK-7P63135 1459 aa10.57□□□□□ -0.72
HDAC3-209ENST00000486618 SCAF11Q99590 1463 aaKnown RBP10.57□□□□□ -0.72
HDAC3-209ENST00000486618 RGS17Q9UGC6 210 aaPredicted RBP10.57□□□□□ -0.72
HDAC3-209ENST00000486618 ABCC3O15438 1527 aa10.57□□□□□ -0.72
HDAC3-209ENST00000486618 PAXIP1Q6ZW49 1069 aaPredicted RBP10.55□□□□□ -0.72
HDAC3-209ENST00000486618 FAM135BQ49AJ0 1406 aa10.55□□□□□ -0.72
HDAC3-209ENST00000486618 UBR1Q8IWV7 1749 aa10.55□□□□□ -0.72
HDAC3-209ENST00000486618 EIF2AK4Q9P2K8 1649 aaKnown RBP10.55□□□□□ -0.72
HDAC3-209ENST00000486618 EIF5BO60841 1220 aaKnown RBP10.54□□□□□ -0.72
HDAC3-209ENST00000486618 LTKP29376 864 aa10.54□□□□□ -0.72
HDAC3-209ENST00000486618 CFAP44Q96MT7 982 aa10.54□□□□□ -0.72
HDAC3-209ENST00000486618 GTF3C3Q9Y5Q9 886 aa10.54□□□□□ -0.72
HDAC3-209ENST00000486618 MAST1Q9Y2H9 1570 aa10.53□□□□□ -0.72
HDAC3-209ENST00000486618 MMRN1Q13201 1228 aa10.53□□□□□ -0.72
HDAC3-209ENST00000486618 ARHGAP23Q9P227 1491 aa10.53□□□□□ -0.72
HDAC3-209ENST00000486618 SLIT1O75093 1534 aa10.53□□□□□ -0.72
HDAC3-209ENST00000486618 XIRP1Q702N8 1843 aaKnown RBP10.52□□□□□ -0.73
HDAC3-209ENST00000486618 POTEAQ6S8J7 498 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms