RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 NUDCQ9Y266 331 aa34.46■■■■□ 3.11
CPNE1-216ENST00000437340 BLMP54132 1417 aaPredicted RBP34.46■■■■□ 3.11
CPNE1-216ENST00000437340 YTHDC2Q9H6S0 1430 aaKnown RBP34.45■■■■□ 3.11
CPNE1-216ENST00000437340 ERICH6BQ5W0A0 696 aa34.44■■■■□ 3.1
CPNE1-216ENST00000437340 TULP4Q9NRJ4 1543 aa34.44■■■■□ 3.1
CPNE1-216ENST00000437340 HDGFP51858 240 aaKnown RBP34.42■■■■□ 3.1
CPNE1-216ENST00000437340 THEMISQ8N1K5 641 aaPredicted RBP34.39■■■■□ 3.1
CPNE1-216ENST00000437340 LTKP29376 864 aa34.39■■■■□ 3.1
CPNE1-216ENST00000437340 BCANQ96GW7 911 aa34.37■■■■□ 3.09
CPNE1-216ENST00000437340 SLC12A5Q9H2X9 1139 aa34.37■■■■□ 3.09
CPNE1-216ENST00000437340 NINLQ9Y2I6 1382 aa34.37■■■■□ 3.09
CPNE1-216ENST00000437340 STK26Q9P289 416 aa34.36■■■■□ 3.09
CPNE1-216ENST00000437340 USP32Q8NFA0 1604 aa34.36■■■■□ 3.09
CPNE1-216ENST00000437340 PDE3BQ13370 1112 aa34.36■■■■□ 3.09
CPNE1-216ENST00000437340 NSD3Q9BZ95 1437 aa34.35■■■■□ 3.09
CPNE1-216ENST00000437340 TXNDC2Q86VQ3 553 aa34.34■■■■□ 3.09
CPNE1-216ENST00000437340 PLEKHG1Q9ULL1 1385 aa34.34■■■■□ 3.09
CPNE1-216ENST00000437340 DLC1Q96QB1 1528 aa34.33■■■■□ 3.09
CPNE1-216ENST00000437340 ANKRD36BQ8N2N9 1353 aa34.32■■■■□ 3.08
CPNE1-216ENST00000437340 EID1Q9Y6B2 187 aa34.31■■■■□ 3.08
CPNE1-216ENST00000437340 PRAM1Q96QH2 718 aa34.3■■■■□ 3.08
CPNE1-216ENST00000437340 WDR43Q15061 677 aaKnown RBP eCLIP34.29■■■■□ 3.08
CPNE1-216ENST00000437340 POGKQ9P215 609 aa34.29■■■■□ 3.08
CPNE1-216ENST00000437340 ADAMTS13Q76LX8 1427 aa34.29■■■■□ 3.08
CPNE1-216ENST00000437340 KDM4FA0A1W2PPD8 638 aa34.28■■■■□ 3.08
CPNE1-216ENST00000437340 ADAMTS8Q9UP79 889 aa34.27■■■■□ 3.08
CPNE1-216ENST00000437340 ATAD2Q6PL18 1390 aa34.27■■■■□ 3.08
CPNE1-216ENST00000437340 SAFB2Q14151 953 aaKnown RBP eCLIP34.26■■■■□ 3.073e-13■□□□□ 9.1
CPNE1-216ENST00000437340 CABP2Q9NPB3 220 aa34.26■■■■□ 3.07
CPNE1-216ENST00000437340 RNF123Q5XPI4 1314 aa34.26■■■■□ 3.07
CPNE1-216ENST00000437340 METP08581 1390 aa34.25■■■■□ 3.07
CPNE1-216ENST00000437340 CGNL1Q0VF96 1302 aa34.25■■■■□ 3.07
CPNE1-216ENST00000437340 NSD2O96028 1365 aa34.24■■■■□ 3.07
CPNE1-216ENST00000437340 ABCC11Q96J66 1382 aa34.24■■■■□ 3.07
CPNE1-216ENST00000437340 MED14O60244 1454 aa34.22■■■■□ 3.07
CPNE1-216ENST00000437340 KNDC1Q76NI1 1749 aa34.22■■■■□ 3.07
CPNE1-216ENST00000437340 SRPK2P78362 688 aaKnown RBP34.21■■■■□ 3.07
CPNE1-216ENST00000437340 SENP3-EIF4A1A0A087X0R7 540 aa34.21■■■■□ 3.07
CPNE1-216ENST00000437340 POLR3AO14802 1390 aaPredicted RBP34.2■■■■□ 3.07
CPNE1-216ENST00000437340 MORC1Q86VD1 984 aa34.2■■■■□ 3.07
CPNE1-216ENST00000437340 MINK1Q8N4C8 1332 aaPredicted RBP34.19■■■■□ 3.06
CPNE1-216ENST00000437340 IRX6P78412 446 aaPredicted RBP34.19■■■■□ 3.06
CPNE1-216ENST00000437340 DIP2AQ14689 1571 aa34.18■■■■□ 3.06
CPNE1-216ENST00000437340 SLC26A8Q96RN1 970 aa34.14■■■■□ 3.06
CPNE1-216ENST00000437340 PPP4R2Q9NY27 417 aa34.13■■■■□ 3.05
CPNE1-216ENST00000437340 ANKLE2Q86XL3 938 aa34.13■■■■□ 3.05
CPNE1-216ENST00000437340 SIRT1Q96EB6 747 aa34.13■■■■□ 3.05
CPNE1-216ENST00000437340 SALL2Q9Y467 1007 aaPredicted RBP34.13■■■■□ 3.05
CPNE1-216ENST00000437340 A0A1W2PP64 1363 aa34.12■■■■□ 3.05
CPNE1-216ENST00000437340 TERF2IPQ9NYB0 399 aa34.12■■■■□ 3.05
CPNE1-216ENST00000437340 CPS1P31327 1500 aa34.12■■■■□ 3.05
CPNE1-216ENST00000437340 CDK19Q9BWU1 502 aa34.11■■■■□ 3.05
CPNE1-216ENST00000437340 TECPR2O15040 1411 aa34.1■■■■□ 3.05
CPNE1-216ENST00000437340 FAM135BQ49AJ0 1406 aa34.08■■■■□ 3.05
CPNE1-216ENST00000437340 TBX22Q9Y458 520 aa34.07■■■■□ 3.04
CPNE1-216ENST00000437340 PTPRUQ92729 1446 aa34.06■■■■□ 3.04
CPNE1-216ENST00000437340 CD163L1Q9NR16 1453 aa34.06■■■■□ 3.04
CPNE1-216ENST00000437340 PLEKHH1Q9ULM0 1364 aa34.05■■■■□ 3.04
CPNE1-216ENST00000437340 WAPLQ7Z5K2 1190 aa34.05■■■■□ 3.04
CPNE1-216ENST00000437340 NGEFQ8N5V2 710 aa34.04■■■■□ 3.04
CPNE1-216ENST00000437340 ZNF521Q96K83 1311 aa34.02■■■■□ 3.04
CPNE1-216ENST00000437340 HDGFL2Q7Z4V5 671 aaPredicted RBP34.02■■■■□ 3.04
CPNE1-216ENST00000437340 CDCA7LQ96GN5 454 aa34.02■■■■□ 3.04
CPNE1-216ENST00000437340 XRN1Q8IZH2 1706 aaKnown RBP34.02■■■■□ 3.04
CPNE1-216ENST00000437340 RCAN3Q9UKA8 241 aa34.01■■■■□ 3.04
CPNE1-216ENST00000437340 NPHP4O75161 1426 aaPredicted RBP34■■■■□ 3.03
CPNE1-216ENST00000437340 ROBO2Q9HCK4 1378 aa33.98■■■■□ 3.03
CPNE1-216ENST00000437340 ATP7BP35670 1465 aa33.98■■■■□ 3.03
CPNE1-216ENST00000437340 CFAP53Q96M91 514 aa33.98■■■■□ 3.03
CPNE1-216ENST00000437340 CHD2O14647 1828 aaKnown RBP33.97■■■■□ 3.03
CPNE1-216ENST00000437340 NCKAP5LQ9HCH0 1330 aa33.97■■■■□ 3.03
CPNE1-216ENST00000437340 TNNT2P45379 298 aaPredicted RBP33.96■■■■□ 3.03
CPNE1-216ENST00000437340 SHPRHQ149N8 1683 aa33.96■■■■□ 3.03
CPNE1-216ENST00000437340 LMTK3Q96Q04 1460 aa33.96■■■■□ 3.03
CPNE1-216ENST00000437340 WASLO00401 505 aaPredicted RBP33.95■■■■□ 3.03
CPNE1-216ENST00000437340 CABP1Q9NZU7 370 aa33.95■■■■□ 3.03
CPNE1-216ENST00000437340 MTHFSP49914 203 aa33.95■■■■□ 3.02
CPNE1-216ENST00000437340 ANKRD26Q9UPS8 1709 aa33.94■■■■□ 3.02
CPNE1-216ENST00000437340 AMOTL2Q9Y2J4 779 aa33.93■■■■□ 3.02
CPNE1-216ENST00000437340 PIK3R4Q99570 1358 aa33.93■■■■□ 3.02
CPNE1-216ENST00000437340 RRP1P56182 461 aaKnown RBP33.93■■■■□ 3.02
CPNE1-216ENST00000437340 GOLGA2Q08379 1002 aa33.92■■■■□ 3.02
CPNE1-216ENST00000437340 CCDC146Q8IYE0 955 aa33.92■■■■□ 3.02
CPNE1-216ENST00000437340 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.92■■■■□ 3.02
CPNE1-216ENST00000437340 FYB1O15117 783 aa33.91■■■■□ 3.02
CPNE1-216ENST00000437340 PTCH1Q13635 1447 aa33.91■■■■□ 3.02
CPNE1-216ENST00000437340 APAF1O14727 1248 aa33.9■■■■□ 3.02
CPNE1-216ENST00000437340 HSPA2P54652 639 aa33.89■■■■□ 3.02
CPNE1-216ENST00000437340 GGNBP2Q9H3C7 697 aa33.87■■■■□ 3.01
CPNE1-216ENST00000437340 TSHZ2Q9NRE2 1034 aa33.87■■■■□ 3.01
CPNE1-216ENST00000437340 ADGRB2O60241 1585 aa33.85■■■■□ 3.01
CPNE1-216ENST00000437340 DUSP27Q5VZP5 1158 aa33.85■■■■□ 3.01
CPNE1-216ENST00000437340 CPSF1Q10570 1443 aaKnown RBP33.84■■■■□ 3.01
CPNE1-216ENST00000437340 RUNDC1Q96C34 613 aa33.83■■■■□ 3.01
CPNE1-216ENST00000437340 KIF20BQ96Q89 1820 aa33.83■■■■□ 3.01
CPNE1-216ENST00000437340 SLFN5Q08AF3 891 aa33.83■■■■□ 3.01
CPNE1-216ENST00000437340 PPIP5K1Q6PFW1 1433 aa33.82■■■■□ 3
CPNE1-216ENST00000437340 KCNA6P17658 529 aa33.82■■■■□ 3
CPNE1-216ENST00000437340 TRMT2AQ8IZ69 625 aaKnown RBP33.82■■■■□ 3
CPNE1-216ENST00000437340 STRCQ7RTU9 1775 aa33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms