RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ADGRB1O14514 1584 aa7.46□□□□□ -1.21
CCDC88A-203ENST00000412148 CC2D1BQ5T0F9 858 aaKnown RBP7.46□□□□□ -1.21
CCDC88A-203ENST00000412148 NLRP1Q9C000 1473 aa7.46□□□□□ -1.21
CCDC88A-203ENST00000412148 CLTCQ00610 1675 aaKnown RBP7.46□□□□□ -1.22
CCDC88A-203ENST00000412148 MAPK8IP3Q9UPT6 1336 aa7.46□□□□□ -1.22
CCDC88A-203ENST00000412148 HECW2Q9P2P5 1572 aa7.45□□□□□ -1.22
CCDC88A-203ENST00000412148 GSE1Q14687 1217 aa7.45□□□□□ -1.22
CCDC88A-203ENST00000412148 NSD2O96028 1365 aa7.44□□□□□ -1.22
CCDC88A-203ENST00000412148 CCDC27Q2M243 656 aa7.44□□□□□ -1.22
CCDC88A-203ENST00000412148 RGL3Q3MIN7 710 aa7.44□□□□□ -1.22
CCDC88A-203ENST00000412148 ZNF518AQ6AHZ1 1483 aa7.44□□□□□ -1.22
CCDC88A-203ENST00000412148 C20orf194Q5TEA3 1177 aa7.44□□□□□ -1.22
CCDC88A-203ENST00000412148 CAMSAP1Q5T5Y3 1602 aa7.44□□□□□ -1.22
CCDC88A-203ENST00000412148 PLIN1O60240 522 aa7.43□□□□□ -1.22
CCDC88A-203ENST00000412148 NFKBIBQ15653 356 aa7.43□□□□□ -1.22
CCDC88A-203ENST00000412148 TMEM132AQ24JP5 1023 aa7.43□□□□□ -1.22
CCDC88A-203ENST00000412148 MED14O60244 1454 aa7.43□□□□□ -1.22
CCDC88A-203ENST00000412148 SPAG9O60271 1321 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-203ENST00000412148 CDC42BPGQ6DT37 1551 aa7.42□□□□□ -1.22
CCDC88A-203ENST00000412148 GLI2P10070 1586 aa7.42□□□□□ -1.22
CCDC88A-203ENST00000412148 REREQ9P2R6 1566 aa7.42□□□□□ -1.22
CCDC88A-203ENST00000412148 SLC4A2P04920 1241 aa7.41□□□□□ -1.22
CCDC88A-203ENST00000412148 CT47B1P0C2W7 299 aaPredicted RBP7.41□□□□□ -1.22
CCDC88A-203ENST00000412148 USP19O94966 1318 aa7.41□□□□□ -1.22
CCDC88A-203ENST00000412148 NPM2Q86SE8 214 aaKnown RBP7.41□□□□□ -1.22
CCDC88A-203ENST00000412148 WDR63Q8IWG1 891 aa7.41□□□□□ -1.22
CCDC88A-203ENST00000412148 FRMPD1Q5SYB0 1578 aa7.41□□□□□ -1.22
CCDC88A-203ENST00000412148 MLH3Q9UHC1 1453 aa7.4□□□□□ -1.22
CCDC88A-203ENST00000412148 ZFYVE9O95405 1425 aa7.4□□□□□ -1.22
CCDC88A-203ENST00000412148 RPGRIP1LQ68CZ1 1315 aa7.4□□□□□ -1.22
CCDC88A-203ENST00000412148 KIF20BQ96Q89 1820 aa7.4□□□□□ -1.23
CCDC88A-203ENST00000412148 PMFBP1Q8TBY8 1022 aa7.4□□□□□ -1.23
CCDC88A-203ENST00000412148 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.4□□□□□ -1.231e-6■■■□□ 18.2
CCDC88A-203ENST00000412148 ABCC3O15438 1527 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 C14orf37Q86TY3 774 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 VSIG10Q8N0Z9 540 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 CLUAP1Q96AJ1 413 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 LAS1LQ9Y4W2 734 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 UGGT1Q9NYU2 1555 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 CNGB1Q14028 1251 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 SIGLEC1Q9BZZ2 1709 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 SALL2Q9Y467 1007 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 CENPJQ9HC77 1338 aaPredicted RBP7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 NEXMIFQ5QGS0 1516 aa7.39□□□□□ -1.23
CCDC88A-203ENST00000412148 WWC1Q8IX03 1113 aa7.38□□□□□ -1.23
CCDC88A-203ENST00000412148 COL3A1P02461 1466 aaPredicted RBP7.38□□□□□ -1.23
CCDC88A-203ENST00000412148 APAF1O14727 1248 aa7.38□□□□□ -1.23
CCDC88A-203ENST00000412148 BECN1Q14457 450 aa7.38□□□□□ -1.23
CCDC88A-203ENST00000412148 RUNDC1Q96C34 613 aa7.38□□□□□ -1.23
CCDC88A-203ENST00000412148 CARD14Q9BXL6 1004 aa7.38□□□□□ -1.23
CCDC88A-203ENST00000412148 TULP4Q9NRJ4 1543 aa7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 NOS1P29475 1434 aa7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 ARHGAP31Q2M1Z3 1444 aa7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 SPINK5Q9NQ38 1064 aaPredicted RBP7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 FAM43AQ8N2R8 423 aa7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 CFAP44Q96MT7 982 aa7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 ANKRD36BQ8N2N9 1353 aa7.37□□□□□ -1.23
CCDC88A-203ENST00000412148 ANTXR1Q9H6X2 564 aa7.36□□□□□ -1.23
CCDC88A-203ENST00000412148 C14orf93Q9H972 538 aaKnown RBP7.36□□□□□ -1.23
CCDC88A-203ENST00000412148 ABCC11Q96J66 1382 aa7.36□□□□□ -1.23
CCDC88A-203ENST00000412148 NSD3Q9BZ95 1437 aa7.36□□□□□ -1.23
CCDC88A-203ENST00000412148 IGHDP01880 384 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 RARSP54136 660 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 IL27Q8NEV9 243 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 FRAT1Q92837 279 aaPredicted RBP7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 TBC1D32Q96NH3 1257 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 IL16Q14005 1332 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 NPATQ14207 1427 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 PPIP5K1Q6PFW1 1433 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 NCOA3Q9Y6Q9 1424 aa7.35□□□□□ -1.23
CCDC88A-203ENST00000412148 POGZQ7Z3K3 1410 aa7.34□□□□□ -1.23
CCDC88A-203ENST00000412148 ADGRF5Q8IZF2 1346 aa7.34□□□□□ -1.23
CCDC88A-203ENST00000412148 SENP3-EIF4A1A0A087X0R7 540 aa7.34□□□□□ -1.23
CCDC88A-203ENST00000412148 BCAR3O75815 825 aa7.34□□□□□ -1.23
CCDC88A-203ENST00000412148 ASXL2Q76L83 1435 aa7.34□□□□□ -1.23
CCDC88A-203ENST00000412148 PAXIP1Q6ZW49 1069 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-203ENST00000412148 L1TD1Q5T7N2 865 aaKnown RBP7.34□□□□□ -1.24
CCDC88A-203ENST00000412148 ISY1Q9ULR0 285 aaKnown RBP7.34□□□□□ -1.24
CCDC88A-203ENST00000412148 MYO5BQ9ULV0 1848 aa7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 RICTORQ6R327 1708 aa7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 PREX1Q8TCU6 1659 aa7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 TMEM131LA2VDJ0 1609 aa7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 BRPF1P55201 1214 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 HDAC1Q13547 482 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 MYH16Q9H6N6 1097 aa7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 RNF216Q9NWF9 866 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 NPM1P06748 294 aaKnown RBP eCLIP7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 CFAP70Q5T0N1 1121 aa7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 RWDD1Q9H446 243 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-203ENST00000412148 NEO1Q92859 1461 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 FRAT2O75474 233 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 SKAP1Q86WV1 359 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 CCDC146Q8IYE0 955 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 AFAP1Q8N556 730 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 CFAP53Q96M91 514 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 UPF2Q9HAU5 1272 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 DMRT2Q9Y5R5 561 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 SETD1AO15047 1707 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 DLC1Q96QB1 1528 aa7.32□□□□□ -1.24
CCDC88A-203ENST00000412148 ZNF428Q96B54 188 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms