RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CEP162Q5TB80 1403 aa5.63□□□□□ -1.51
MCF2-202ENST00000370573 APLP1P51693 650 aa5.63□□□□□ -1.51
MCF2-202ENST00000370573 GRIN2AQ12879 1464 aa5.63□□□□□ -1.51
MCF2-202ENST00000370573 SLF2Q8IX21 1173 aa5.62□□□□□ -1.51
MCF2-202ENST00000370573 NYAP1Q6ZVC0 841 aa5.61□□□□□ -1.51
MCF2-202ENST00000370573 SLC4A3P48751 1232 aa5.61□□□□□ -1.51
MCF2-202ENST00000370573 PODXL2Q9NZ53 605 aa5.61□□□□□ -1.51
MCF2-202ENST00000370573 CLIP1P30622 1438 aa5.61□□□□□ -1.51
MCF2-202ENST00000370573 COPS2P61201 443 aa5.61□□□□□ -1.51
MCF2-202ENST00000370573 NUP160Q12769 1436 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 CTTNBP2Q8WZ74 1663 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.6□□□□□ -1.51
MCF2-202ENST00000370573 SLC10A3P09131 477 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 CEP170Q5SW79 1584 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 CHD1O14646 1710 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 ZNF516Q92618 1163 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 MTRQ99707 1265 aa5.6□□□□□ -1.51
MCF2-202ENST00000370573 KIAA0586Q9BVV6 1533 aa5.59□□□□□ -1.51
MCF2-202ENST00000370573 IRF6O14896 467 aa5.59□□□□□ -1.51
MCF2-202ENST00000370573 KCNC4Q03721 635 aa5.59□□□□□ -1.51
MCF2-202ENST00000370573 NEUROD2Q15784 382 aa5.59□□□□□ -1.51
MCF2-202ENST00000370573 ZC3H15Q8WU90 426 aaKnown RBP5.59□□□□□ -1.51
MCF2-202ENST00000370573 ARHGAP35Q9NRY4 1499 aa5.59□□□□□ -1.51
MCF2-202ENST00000370573 DDX11L8A8MPP1 907 aa5.59□□□□□ -1.52
MCF2-202ENST00000370573 MAP2K5Q13163 448 aa5.59□□□□□ -1.52
MCF2-202ENST00000370573 TJAP1Q5JTD0 557 aa5.59□□□□□ -1.52
MCF2-202ENST00000370573 KRI1Q8N9T8 703 aaKnown RBP5.59□□□□□ -1.52
MCF2-202ENST00000370573 SLC24A3Q9HC58 644 aa5.59□□□□□ -1.52
MCF2-202ENST00000370573 ITGBL1O95965 494 aaPredicted RBP5.58□□□□□ -1.52
MCF2-202ENST00000370573 CFHP08603 1231 aa5.58□□□□□ -1.52
MCF2-202ENST00000370573 ARAP1Q96P48 1450 aa5.58□□□□□ -1.52
MCF2-202ENST00000370573 IQGAP2Q13576 1575 aa5.58□□□□□ -1.52
MCF2-202ENST00000370573 RDH13Q8NBN7 331 aa5.58□□□□□ -1.52
MCF2-202ENST00000370573 CCDC102AQ96A19 550 aa5.58□□□□□ -1.52
MCF2-202ENST00000370573 NKX2-3Q8TAU0 364 aa5.57□□□□□ -1.52
MCF2-202ENST00000370573 MDM2Q00987 491 aaPredicted RBP5.57□□□□□ -1.52
MCF2-202ENST00000370573 PCDHB3Q9Y5E6 796 aa5.57□□□□□ -1.52
MCF2-202ENST00000370573 UGGT2Q9NYU1 1516 aa5.56□□□□□ -1.52
MCF2-202ENST00000370573 MINK1Q8N4C8 1332 aaPredicted RBP5.56□□□□□ -1.52
MCF2-202ENST00000370573 PUS10Q3MIT2 529 aaKnown RBP5.56□□□□□ -1.52
MCF2-202ENST00000370573 BLOC1S3Q6QNY0 202 aa5.56□□□□□ -1.52
MCF2-202ENST00000370573 FHOD3Q2V2M9 1422 aa5.56□□□□□ -1.52
MCF2-202ENST00000370573 SAMD9Q5K651 1589 aa5.56□□□□□ -1.52
MCF2-202ENST00000370573 DISP1Q96F81 1524 aa5.55□□□□□ -1.52
MCF2-202ENST00000370573 NECTIN2Q92692 538 aa5.55□□□□□ -1.52
MCF2-202ENST00000370573 IL21Q9HBE4 155 aa5.55□□□□□ -1.52
MCF2-202ENST00000370573 EFCAB5A4FU69 1503 aa5.55□□□□□ -1.52
MCF2-202ENST00000370573 CLASP1Q7Z460 1538 aa5.55□□□□□ -1.52
MCF2-202ENST00000370573 ZMYND10O75800 440 aa5.55□□□□□ -1.52
MCF2-202ENST00000370573 VPS8Q8N3P4 1428 aa5.54□□□□□ -1.52
MCF2-202ENST00000370573 A0A0G2JS52 829 aa5.54□□□□□ -1.52
MCF2-202ENST00000370573 KMT5BQ4FZB7 885 aa5.54□□□□□ -1.52
MCF2-202ENST00000370573 IFFO2Q5TF58 517 aa5.54□□□□□ -1.52
MCF2-202ENST00000370573 ACTN4O43707 911 aaKnown RBP5.54□□□□□ -1.52
MCF2-202ENST00000370573 TRIM26Q12899 539 aaPredicted RBP5.54□□□□□ -1.52
MCF2-202ENST00000370573 BARGINQ6ZT62 677 aa5.54□□□□□ -1.52
MCF2-202ENST00000370573 TLL1O43897 1013 aa5.53□□□□□ -1.52
MCF2-202ENST00000370573 RSPH4AQ5TD94 716 aa5.53□□□□□ -1.52
MCF2-202ENST00000370573 PRR14Q9BWN1 585 aa5.53□□□□□ -1.52
MCF2-202ENST00000370573 PRG4Q92954 1404 aaPredicted RBP5.53□□□□□ -1.52
MCF2-202ENST00000370573 FUT2Q10981 343 aa5.53□□□□□ -1.52
MCF2-202ENST00000370573 KIAA0556O60303 1618 aa5.52□□□□□ -1.53
MCF2-202ENST00000370573 SHROOM2Q13796 1616 aa5.52□□□□□ -1.53
MCF2-202ENST00000370573 ZPR1O75312 459 aa5.52□□□□□ -1.53
MCF2-202ENST00000370573 PPARGC1BQ86YN6 1023 aaKnown RBP5.52□□□□□ -1.53
MCF2-202ENST00000370573 REPIN1Q9BWE0 567 aaKnown RBP5.52□□□□□ -1.53
MCF2-202ENST00000370573 ERCC6L2Q5T890 1561 aa5.52□□□□□ -1.53
MCF2-202ENST00000370573 TTBK1Q5TCY1 1321 aaPredicted RBP5.52□□□□□ -1.53
MCF2-202ENST00000370573 PPP1R18Q6NYC8 613 aa5.52□□□□□ -1.53
MCF2-202ENST00000370573 SULF1Q8IWU6 871 aa5.52□□□□□ -1.53
MCF2-202ENST00000370573 CARMIL2Q6F5E8 1435 aa5.51□□□□□ -1.53
MCF2-202ENST00000370573 HRCP23327 699 aa5.51□□□□□ -1.53
MCF2-202ENST00000370573 GCGRP47871 477 aa5.51□□□□□ -1.53
MCF2-202ENST00000370573 SCUBE3Q8IX30 993 aa5.51□□□□□ -1.53
MCF2-202ENST00000370573 FMN1Q68DA7 1419 aa5.5□□□□□ -1.53
MCF2-202ENST00000370573 CASKIN1Q8WXD9 1431 aa5.5□□□□□ -1.53
MCF2-202ENST00000370573 TTLL12Q14166 644 aaPredicted RBP5.5□□□□□ -1.53
MCF2-202ENST00000370573 GPCPD1Q9NPB8 672 aa5.5□□□□□ -1.53
MCF2-202ENST00000370573 PCF11O94913 1555 aaKnown RBP5.5□□□□□ -1.53
MCF2-202ENST00000370573 ATP1B4Q9UN42 357 aaPredicted RBP5.49□□□□□ -1.53
MCF2-202ENST00000370573 CD46P15529 392 aa5.49□□□□□ -1.53
MCF2-202ENST00000370573 CLCN1P35523 988 aa5.49□□□□□ -1.53
MCF2-202ENST00000370573 KANK4Q5T7N3 995 aaPredicted RBP5.49□□□□□ -1.53
MCF2-202ENST00000370573 PTPRGP23470 1445 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 PPEF1O14829 653 aaPredicted RBP5.48□□□□□ -1.53
MCF2-202ENST00000370573 HLA-CQ95604 372 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 SLC27A5Q9Y2P5 690 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 PLB1Q6P1J6 1458 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 FYCO1Q9BQS8 1478 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 NR1I2O75469 434 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 ATP6V1AP38606 617 aa5.48□□□□□ -1.53
MCF2-202ENST00000370573 GPBP1L1Q9HC44 474 aaPredicted RBP5.48□□□□□ -1.53
MCF2-202ENST00000370573 FAM217BQ9NTX9 383 aaPredicted RBP5.48□□□□□ -1.53
MCF2-202ENST00000370573 S1PR4O95977 384 aa5.47□□□□□ -1.53
MCF2-202ENST00000370573 MORN1Q5T089 497 aa5.47□□□□□ -1.53
MCF2-202ENST00000370573 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.47□□□□□ -1.53
MCF2-202ENST00000370573 LRRIQ1Q96JM4 1722 aa5.47□□□□□ -1.53
MCF2-202ENST00000370573 ARID3CA6NKF2 412 aa5.47□□□□□ -1.53
MCF2-202ENST00000370573 TRIM66O15016 1216 aa5.47□□□□□ -1.53
MCF2-202ENST00000370573 SSTR3P32745 418 aaPredicted RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms