RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TCERG1O14776 1098 aaKnown RBP8.66□□□□□ -1.02
SF3B1-201ENST00000335508 C19orf44Q9H6X5 657 aa8.66□□□□□ -1.02
SF3B1-201ENST00000335508 TESK2Q96S53 571 aa8.65□□□□□ -1.02
SF3B1-201ENST00000335508 ANP32EQ9BTT0 268 aa8.65□□□□□ -1.02
SF3B1-201ENST00000335508 DDX58O95786 925 aaKnown RBP8.65□□□□□ -1.02
SF3B1-201ENST00000335508 DDX19BQ9UMR2 479 aa8.65□□□□□ -1.02
SF3B1-201ENST00000335508 PRAG1Q86YV5 1406 aa8.65□□□□□ -1.02
SF3B1-201ENST00000335508 NPHP1O15259 732 aa8.65□□□□□ -1.02
SF3B1-201ENST00000335508 CCDC146Q8IYE0 955 aa8.65□□□□□ -1.02
SF3B1-201ENST00000335508 RALGAPBQ86X10 1494 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 PRKAR2BP31323 418 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 WDR63Q8IWG1 891 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 ABCC11Q96J66 1382 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 HSP90AB1P08238 724 aaKnown RBP8.64□□□□□ -1.03
SF3B1-201ENST00000335508 RGS3P49796 1198 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 TTC21AQ8NDW8 1320 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 LRPPRCP42704 1394 aaKnown RBP8.64□□□□□ -1.03
SF3B1-201ENST00000335508 NPC1L1Q9UHC9 1359 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 ATP7AQ04656 1500 aa8.64□□□□□ -1.03
SF3B1-201ENST00000335508 WAPLQ7Z5K2 1190 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 ITPRIPQ8IWB1 547 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 RIMS2Q9UQ26 1411 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 MAGI3Q5TCQ9 1506 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 RRP7AQ9Y3A4 280 aaKnown RBP8.63□□□□□ -1.03
SF3B1-201ENST00000335508 NPHP3Q7Z494 1330 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 UHRF1BP1Q6BDS2 1440 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 B4GALNT3Q6L9W6 998 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 PDE3AQ14432 1141 aa8.63□□□□□ -1.03
SF3B1-201ENST00000335508 PZPP20742 1482 aa8.62□□□□□ -1.03
SF3B1-201ENST00000335508 TATP17735 454 aaPredicted RBP8.62□□□□□ -1.03
SF3B1-201ENST00000335508 ARHGEF5Q12774 1597 aa8.62□□□□□ -1.03
SF3B1-201ENST00000335508 FOXO3O43524 673 aa8.62□□□□□ -1.03
SF3B1-201ENST00000335508 CLUAP1Q96AJ1 413 aa8.62□□□□□ -1.03
SF3B1-201ENST00000335508 HSP90B1P14625 803 aaKnown RBP8.62□□□□□ -1.03
SF3B1-201ENST00000335508 CFAP43Q8NDM7 1665 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 ARHGAP31Q2M1Z3 1444 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 TTC21BQ7Z4L5 1316 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 DZIP1LQ8IYY4 767 aaKnown RBP8.61□□□□□ -1.03
SF3B1-201ENST00000335508 SMG6Q86US8 1419 aaKnown RBP8.61□□□□□ -1.03
SF3B1-201ENST00000335508 SULT6B1Q6IMI4 303 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 DNMT1P26358 1616 aaKnown RBP8.61□□□□□ -1.03
SF3B1-201ENST00000335508 NPATQ14207 1427 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 NSD3Q9BZ95 1437 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 ANKRD36BQ8N2N9 1353 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 TMEM2Q9UHN6 1383 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 KCNA6P17658 529 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 HSP90AB4PQ58FF6 505 aa8.61□□□□□ -1.03
SF3B1-201ENST00000335508 RRP1P56182 461 aaKnown RBP8.6□□□□□ -1.03
SF3B1-201ENST00000335508 ELL2O00472 640 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-201ENST00000335508 AMER1Q5JTC6 1135 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-201ENST00000335508 C11orf95C9JLR9 678 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-201ENST00000335508 GTF2E1P29083 439 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-201ENST00000335508 GNAI3P08754 354 aa8.6□□□□□ -1.03
SF3B1-201ENST00000335508 AMOTQ4VCS5 1084 aa8.6□□□□□ -1.03
SF3B1-201ENST00000335508 PBRM1Q86U86 1689 aa8.59□□□□□ -1.03
SF3B1-201ENST00000335508 GOLGA6L22H0YM25 854 aa8.59□□□□□ -1.03
SF3B1-201ENST00000335508 ZNF530Q6P9A1 599 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-201ENST00000335508 CENPQQ7L2Z9 268 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-201ENST00000335508 TSPYL4Q9UJ04 414 aa8.59□□□□□ -1.03
SF3B1-201ENST00000335508 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.59□□□□□ -1.03
SF3B1-201ENST00000335508 WWC1Q8IX03 1113 aa8.59□□□□□ -1.03
SF3B1-201ENST00000335508 TOM1O60784 492 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 HMOX1P09601 288 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 MCCP23508 829 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 FKBP5Q13451 457 aaPredicted RBP8.58□□□□□ -1.04
SF3B1-201ENST00000335508 NFE2L2Q16236 605 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 TPRNQ4KMQ1 711 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 SPG7Q9UQ90 795 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 MSH6P52701 1360 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 SLC4A10Q6U841 1118 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 KCNJ4P48050 445 aa8.58□□□□□ -1.04
SF3B1-201ENST00000335508 ARID3AQ99856 593 aa8.57□□□□□ -1.04
SF3B1-201ENST00000335508 ZNF330Q9Y3S2 320 aaPredicted RBP8.57□□□□□ -1.04
SF3B1-201ENST00000335508 GPATCH3Q96I76 525 aa8.57□□□□□ -1.04
SF3B1-201ENST00000335508 PLEKHG3A1L390 1219 aa8.57□□□□□ -1.04
SF3B1-201ENST00000335508 LRRFIP1Q32MZ4 808 aaKnown RBP8.57□□□□□ -1.04
SF3B1-201ENST00000335508 ANP32BQ92688 251 aaKnown RBP8.57□□□□□ -1.04
SF3B1-201ENST00000335508 FYB1O15117 783 aa8.57□□□□□ -1.04
SF3B1-201ENST00000335508 KIAA1211Q6ZU35 1233 aa8.57□□□□□ -1.04
SF3B1-201ENST00000335508 TMX4Q9H1E5 349 aaPredicted RBP8.57□□□□□ -1.04
SF3B1-201ENST00000335508 PIK3R4Q99570 1358 aa8.56□□□□□ -1.04
SF3B1-201ENST00000335508 ACEP12821 1306 aa8.56□□□□□ -1.04
SF3B1-201ENST00000335508 PER1O15534 1290 aaPredicted RBP8.56□□□□□ -1.04
SF3B1-201ENST00000335508 CCDC30Q5VVM6 783 aa8.56□□□□□ -1.04
SF3B1-201ENST00000335508 YEATS2Q9ULM3 1422 aa8.56□□□□□ -1.04
SF3B1-201ENST00000335508 NCBP3Q53F19 620 aaKnown RBP8.56□□□□□ -1.04
SF3B1-201ENST00000335508 C9orf78Q9NZ63 289 aaPredicted RBP8.56□□□□□ -1.04
SF3B1-201ENST00000335508 YTHDC2Q9H6S0 1430 aaKnown RBP8.56□□□□□ -1.04
SF3B1-201ENST00000335508 NUTM2GQ5VZR2 741 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 PTPRTO14522 1441 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 TOM1L2Q6ZVM7 507 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 NME9Q86XW9 330 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 TMPOP42166 694 aaKnown RBP8.55□□□□□ -1.04
SF3B1-201ENST00000335508 KLHL34Q8N239 644 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 CHMP4CQ96CF2 233 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 TWISTNBQ3B726 338 aaPredicted RBP8.55□□□□□ -1.04
SF3B1-201ENST00000335508 TAF7LQ5H9L4 462 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 COG6Q9Y2V7 657 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 FGD1P98174 961 aa8.55□□□□□ -1.04
SF3B1-201ENST00000335508 POLR3AO14802 1390 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms